Gene loci information

Transcript annotation

  • This transcript has been annotated as CCR4-NOT transcription complex subunit 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4799 g4799.t1 TSS g4799.t1 5009094 5009094
chr_2 g4799 g4799.t1 isoform g4799.t1 5009321 5017355
chr_2 g4799 g4799.t1 exon g4799.t1.exon1 5009321 5009428
chr_2 g4799 g4799.t1 cds g4799.t1.CDS1 5009321 5009428
chr_2 g4799 g4799.t1 exon g4799.t1.exon2 5009665 5009868
chr_2 g4799 g4799.t1 cds g4799.t1.CDS2 5009665 5009868
chr_2 g4799 g4799.t1 exon g4799.t1.exon3 5009924 5010098
chr_2 g4799 g4799.t1 cds g4799.t1.CDS3 5009924 5010098
chr_2 g4799 g4799.t1 exon g4799.t1.exon4 5010156 5015698
chr_2 g4799 g4799.t1 cds g4799.t1.CDS4 5010156 5015698
chr_2 g4799 g4799.t1 exon g4799.t1.exon5 5015753 5015899
chr_2 g4799 g4799.t1 cds g4799.t1.CDS5 5015753 5015899
chr_2 g4799 g4799.t1 exon g4799.t1.exon6 5015959 5016369
chr_2 g4799 g4799.t1 cds g4799.t1.CDS6 5015959 5016369
chr_2 g4799 g4799.t1 exon g4799.t1.exon7 5016429 5016670
chr_2 g4799 g4799.t1 cds g4799.t1.CDS7 5016429 5016670
chr_2 g4799 g4799.t1 exon g4799.t1.exon8 5016731 5016941
chr_2 g4799 g4799.t1 cds g4799.t1.CDS8 5016731 5016941
chr_2 g4799 g4799.t1 exon g4799.t1.exon9 5017042 5017190
chr_2 g4799 g4799.t1 cds g4799.t1.CDS9 5017042 5017190
chr_2 g4799 g4799.t1 exon g4799.t1.exon10 5017256 5017355
chr_2 g4799 g4799.t1 cds g4799.t1.CDS10 5017256 5017355
chr_2 g4799 g4799.t1 TTS g4799.t1 5017819 5017819

Sequences

>g4799.t1 Gene=g4799 Length=7290
ATGCAAAAATTAAGTGATGCACAGTCAATTTGTTTATTGCAATTGTCGCAGATAGTATCA
AGTTTAACAAAGAGGAACTTTCCACAAAGCTCGCGTGAGATATCTGAGCTTTGTAAGCAG
TTTGGAATTGAAGCAGAAAGGCATCTTCTGCGTTGTTTGTTTTCATCAATTGATTTTGGA
GACGCACATTCAGTAAAAAACAATTCATTGCAAGCTAAACTATTATCAAGTGAACTATCA
TCGATACTCAATAAGCCTTCATTCGTATCAAGTATTTGTTTTGCAGTTGAGAATCCATTT
CCTCAACAAAAGACATTAAGACCATCTCAACATTTAATCAATCAAATCTCAAAGGCACTT
AATTGCTCACAAATTCAGGAAATTTCATTGGCTATTGCCTTGAAAAGTTCTTTAAACGTC
GAACTTTCGAAATTTGCTGAACAGCATTTAAAGATTTGTTTACCACAACTTATACAAAAT
TATATAGATTCTTCAAGACCATCACAAGAAGGAACCTTAACTGATATTTCTCCTGAGCTT
CTTCAGTTACTTTTAGGTCTGATAGCATACGGGAAACATACAAATTATAATTTAAACGAC
TCAGTCTACAACAAATTTATCAAAAAATTGTGTCGTGATTTTCCACGAGATCACGTCCCA
TTAATTCTTACTCCATTGTTGTATCTTGAAGAAAGTGAAATATCATCTGAATCTATTTTG
TCAAATTCACAGAATATTTTCAAATCCAGCATCATGGATACTTCTTGGTCGAAACTAATT
ATGGAAATTGGATATTCATTTACGCAATCATTGGAAGAGTGTAAATCGCATCTTATGAAA
GGTGGTGGACGAGATGTGACTGCACAAGATGTTGCAAAAATAATATCACTTATGTGTCAA
ACACATACCAATTTATCGGATAGTAGCATAAATTTACCAACACCAAATGCTTTTTGGTCG
CAGTCAAGTGATTCATCATCGACAGGTGGTGCAAATCAAAAAGAGAAATTAACGACAATT
GAAAATACTTCATGGAAACCAGATGTTTTTGTGCAGGCATTGAAAGAAGTCGTACCGAAT
TTAAACTGGAAAGAAGTGTGTTTAGGCTTGGATCATCCAGAATTCATTATTAAAGATCGA
ATTGGATTAAATCTGCTCATAACAACAATTAGACTCGGATTTCAAACAAGTGGAATGGGT
CAAAATTTCCCTGCAGAGTGTATATATAGACATTGGACAAATGTTGATGGTCAATTGTCA
CTCATTTCAGCTATATTGAAAAGTCCTGATATCTATTCATTTGCTGATCACATATATACA
TCAGTACCCGTTGAAGTCTTAAAAACACCACCTGAAGCTGATAATAAAGAGATTGCTGCA
TGGAAATCAGTTCATTTAGTTGAAACATTGCTATACATTTCTGATAATGGACACTATAAT
CAAGTGTTGGAAATTTTAAAGTTTCCTCTTCAACATTGTCCTGATATTCTTTTTATGGCA
CTTCTTCATTCAAATGGACCACTTATGATGTTTAGACAGGAACTTTTTACAACACTTGTT
CCCATTTTTCTGAGCAATCATCCTAATTCTGGACCTATACTTCATCATGCCTGGAATTCT
ACAAATTATGGTGCATCTTTGAAAAATATCATTATGCTATCAATGAATGAATGGTATATT
CGAAGTGATTGTGATCAAACAAAACTTTCAAGAATTCTTGATGTCGCTCAAGATTTAAAA
GCATTATCAAATCTATTAAACTCTCGAGAGCCACGCTTCTTTATGTTTGTTATCGACCTT
GCTTGCCTTGCATCACGTCGTGAGTATCTGAAATTGGACAAATGGTTGACTGATAAATTA
AGAGAACATGGTGATCAATTTGTTGCGACACTGTGCAAATTCCTTCAACGAAGATGCCCA
CAAATTATGGGAAAAGCTGCTGATGATCAAATGTCAAAAATGGGTCAACTTCAGCCAGAG
ACACTCAATATAATCGTTCAATGTCTACATGCCTTTATTCCAAATATTCATTTGCCTGAT
GTGGCTGAACAAGCAAATACAATCGTGACAAATTGCAATCTATTGCTGAATAAACGAAGA
CAATTTCCACCTGCAGTTCTTCGTGCAAATTCTCATATGGGTATTGAACAACCACCACCT
TTTAATACAAACATGCAAAATTTTCAATCAAGCATGAATTTTTCTGATCTCAGTGCAGGA
ATGAATGCTCTTAATTTGGTCAATCCTAATAGCAATGCTTTTAACGCATTTGGAAATATG
CTCGGAAATACACCTGCATCACCTTCTCGTTTAATGTCAGCTCTCGGAAGTACTACTTCA
AATAGTCCGTTTCCTATGCAAGTTAATGCACCTCAGAATATGCGAATGGGTGCTACACCA
ACTGGAGACAGAGATAAAGCTCATGTCGTGAATCCTCTTCCAAATCAACAAAATCCACCA
ACACAACAGTCGCTATTTGGTGATCAACAACCATCGATTTCATCAGAAATTGAAGAAGAA
GCAAATGGATACTTTCAAAGAATTTACAATCATCCACCACATCCAACTCTTTCGATCGAT
GAAGTTCTCGATATGCTTAAGCGCTTTTCTGAATCAAATGTTCGTCGAGAGCGTGAAGTA
CATTTTTGTATGCTCCGAAATTTACTAGAAGAATATAAATTCTTTCCTCAATATCCCGAT
AAAGAACTTCAAATTACAGCTCAACTTTTCGGTGGAATGATTGATAGAAATTTAGTAGAT
ACCTATATGACACTTGGACTGGCATTGAGATGTGTTTTGGACTCTCTAAAGAAACAAGAA
GGTTCTAAGATGTATTATTTTGGTATAACAGCTTTGGATCGTTTTAAAAATAGACTACAT
ACTTATCATAAATATTGTGAACATGTAAGAGCTATTCCGCATTTTAATTCATTTCCGCCA
CATTTAATTAAATATGTTGAATATGGGTGCAATCAAGAGCTACCACCAGAAGCACAATTA
CAATCAGTCAATTCTTCAGCTGATCCAAGTGGACAATTATTACCTAATGCGATCTCACAA
ATGCCTATGTCATCGGCTCAATCACTCTATCGTAGCAACTCGGTTACTGGAAATATTGTC
ACTCAAGCAAAATCAACAACTGCCACAGCAACGACACCAAGCAATAGTGCAGCTCTGCCT
GCAAAATCCTTCAAATCTATTGCTAACGCAACAAACATTGATACTTTGCTTGTTGCAAAT
GAAACGGAGAGCGAAAAAATCGTGATGCCACCAGATTCAGTACAGGATAAGACAGCTTTT
ATTTTCAATAATTTGAGCCAATTAAATCTTACTTCGAAATGTGAGGAAATTAAAGAGATA
TTACAGAAAGAATATTATCCTTGGATGTCACAATATTTAGTTCTTAAGCGTGCAAGTATT
GAAATTAATTTCCATACGCTTTATTCAAATTTCTTAGACGCATTAAAAATATCCGAGCTA
TTGATACTCACAACAAACGAGACATTTAGAAATATCAAGGTGCTTTTAAGAAGTGATAAG
AGCATTGCTAACTTTTCTGATCGAAGTTTACTCAAGAATTTAGGGCATTGGTTGGGTATG
TTAACATTAGGAAGAAATCGTCCAATTTTACACAATGATATAGATTTGAAGTCATTAGTG
CTCGAAGCATATTCAAAGGGACAGCAAGAATTACTATATGTAGTTCCATTTGTAGCAAAA
GTTTTGGAATCAACAGCAAAAAGTAGAATTTTCAAACCACCAAATCCCTGGACAATGGCA
ATTATGAATGTTTTAGCTGAACTTCATCAAGAACCTGAGCTCAAATTGAATTTAAAATTT
GAAATTGAAGTTCTCTGTAAGAGTCTTAATTTAGAAGTTTCAGAATTGAAGCCTGCGTAT
TATCTTAAAGATCCAGAACGACCATCAAAAATTATTCATCAACTATCACCACCAAGCAAA
AAACAAGAACAACAAATTGCTATACAACAATCAACACTTGCAGCCGAAGAACCTTCAACA
TCAGCAACATCTTTACAATCAGCATCGCCAGCAAATTCAACAGAAGCTTTTGCAACTGGT
CCAAGTGAACCTCGTTATCATCTCAATGATATTATTGTACAAAATTATGGATCACACATT
TCAAACTTGGTTGTTCTTTCATCAACTCTTGTTCTTTTACATCCACAATTGAAGAGTATC
GTCGTTGCAGCACTTGATAGGACTATTCGTGAATGGGTACAACCAGTTGTCGATAGATCA
GTTAAAATATCTAGTAAAACTACTGAGGCCATTATTCGTAAAGATTTTGCTCTAGATTCA
GATGAAAATACAATGAGACAAGCAGCACATTGTATGGCTAGAAATCTTGCTGCCGGTATG
GCAATGATAACTTGCAAGGATCAATTGATTGGTGCAATTCAATCAAATGTAAAAACTCAA
TTAATAAATGTTTTGGCTCCACAACAAAAAGATCAAATTGATATGGCAGCAAGTATGATT
GCAAATGACAATGCAGAACTCGTTTGTGCTTTTATTCAAAAGTTTGCTATTGAAAGAGCA
ATACCAGAAATCGACAAGGCTTTAATGAATGAATATGAATTGAGAAAAATGGCTAGACAA
GAAGGCAGAACGTTTTGTGATCATACAGTTTTGGCTTATCAAGCAGAAAGAATTCCACTT
CAAATTCGTTTAAAAGTTGGAGCTGTTTCGCCAAATCAATTGGCTGTTTATGAAGAATTC
GGTAGAAATGTTCCAGGATTCCAACGTATTGTAGATAGAGACATGTTTTCAAAGCAAACA
CCTACTATTGAGCAAACAGCACAATTACCAATGGTAGCAGCAGCAGCTGCAGTGTCCAAT
AACAATACAACAAATAATGTTGCATCTGTAGCAGCCTCTGTTTCAAATGGAATTCAATTA
TCAAATCTCAATAATTCATCTCAATTTGGAGCATTCGGACAACAAGATGATTTTGGTTTG
GTTTATGAAGATTTACAGCAGAAAATCGAAACTTTCATTAGCATGTATAATACTGTCCCA
CTTCTTCAAATTCAAACGCAATGTATGCATTCATTGCTTGAATGTGTAATTCTGGTTCGA
CGCACACGTGAGACTAGTGCACAACAGGCTCTATTGAAGAAAACTGTTGAAAGTTTAATG
GAAGGCTTCATTGTACTCACTGATTATGCTGAACAAATCAAAATGTTTCGTGATTTACAT
TTGCGTATTTTAAAGATTCTTCAAGATAATCGTGCATTCGGTCAAGCATGGACAAATAAA
TGTGTCTCAAGATATTTACTTGAGTGTCCTGAAAACTGTCGTTACAATGTAGAAGCTGTA
GAAATTTTAATAACAACTGGTTGTGTCATTTTACCACAGTATGATGCAGGTCTTTCACAA
TTAATTGAAAATGGAAGTTTCACAGCAGCGAGTTTTGCAACGAAGCTTCTTCAAGTTCAT
TTCCTTGATGATAGAGCTAATATTGGATCGCAAGAAGGTGATTTTAATTGTACAATTACC
ATTTTAGAGCGATTAGCACAACATAACAACGGACCAGAATCTCTTTTGAATCTTCTTGAG
TTGCTACGTAATCAACAAGATCAAAGTGTACATTTATCCGATCGTGTCATTCATGGACCA
ACATCTTACATTCATTCTGGTATGCTTCAAGCACGAAACACTACAGAAGTTGATGAACCA
CCAGGATTCATTGAAAAGTCCGAATATCTTTTGAAAGATTGGATAACTATTTACCATACA
CCTGGAGCTAATCGTGATCAATTAAAAGCATTTTCAACATTCGTGAATAAAATGAACATT
TATGGAATTTTAAAAGGCGATGAAGCACTAACAAGATTTTTCAGACATGCAACACAAATG
TGCATTGACTTAACATACAGAAGTGACCCAATTATAAGCAAGACTAAAATCTTTCAATGG
ATTGATGCCTACGTAAGATTAATTGCATTGCTTGTAAAGCATTCAGGAGAAACATCAAAC
TCAACGACAAAATTAAATCTTCTAAATAAGATTCTCGGGATTGTGATTGGAATTCTATTA
AAAGATCAGGAGATTCATAAACACAATTTTCAACAAGTTGGGTATCATCGTATATTCATT
ATGCTTTTCTTAGAATTGAGTTCATCCGATCCAGTTCTGGAAAATATTATGACAAGTGTA
TTGACAGCTTTCTGTCATGCTTATCACATTTTGAGACCATCACTCGCTCCTGGGTTCTGC
TATTCATGGCTTGAATTAATTTCTCATCGTATATTCTTGCAAAGAATGCTTGCAACAACT
CCACAAGCAAAAGGCTGGTCAATGTATTCACAATTACTCATTGACTTGTTCAAATTTCTG
GCACCTTTCTTGCGTAATGCTGAATTAGCGAAATCAGTGACATTGATGTATAAAGGGACT
TTGCGTGTACTCTTAGTGTTGCTTCATGATTTCCCTGAATTTCTCTGTGACTATCATTTT
GGCTTTTGTGATGTCATACCGCCAAATTGTATTCAAATGAGAAATCTGATATTATCAGCT
TATCCTCGAAATATGCGATTGCCCGATCCATTCACACCAAATTTGAAGGTTGATATGTTG
AGTGATATTAATACAGCACCAAGAATTCATTGTAACTATGCTGCTGCAATTCAACCATTA
AATTTCAAGAAGGATTTAGATTCTTATTTGAAACAGCGTTCTCCAGTTACATTTTTAGCT
GAAATAAGAGGGCACTTGCAAATTTCGAATGAACCAGGTTCACGGTATAATATCCCATTA
ATGAATGCATTGGTTCTTTATGTCGGAACGCAAGCGATAAATCAAATTCGTCAGAAGAAT
CAAAATCCAACTATTACAAATATCATTCACAATGCGCATATGGATATTCTTCAAAACTTA
GCTGTCGATTTGGATAATGAAGGACGTTACTTATTCTTGAATGCTATCGCAAATCAGTTA
CGTTATCCAAACATTCACACACATTACTTTAGCTGTGCATTGCTTTATCTATTTGATGAG
GCCAATTCGGAAGCCATTCAAGAGCAAATAACGCGTGTATTGTTGGAGCGATTGATTGTG
AACCGACCACATCCATGGGGCTTGCTAATTACATTTATTGAGCTGATAAAAAATCCATCA
TACAAGTTTTGGGATCACGATTTTGTACATTGCGCTCCTGAAATTGAAAAATTATTCGAG
TCAGTAGCAAGATCATGTATGGTAAAAACTCAACAGACTCAAGATTTTGACTCTGTCAAA
CCTATGGTTGAAAATCCATCTGATCTTTAA

>g4799.t1 Gene=g4799 Length=2429
MQKLSDAQSICLLQLSQIVSSLTKRNFPQSSREISELCKQFGIEAERHLLRCLFSSIDFG
DAHSVKNNSLQAKLLSSELSSILNKPSFVSSICFAVENPFPQQKTLRPSQHLINQISKAL
NCSQIQEISLAIALKSSLNVELSKFAEQHLKICLPQLIQNYIDSSRPSQEGTLTDISPEL
LQLLLGLIAYGKHTNYNLNDSVYNKFIKKLCRDFPRDHVPLILTPLLYLEESEISSESIL
SNSQNIFKSSIMDTSWSKLIMEIGYSFTQSLEECKSHLMKGGGRDVTAQDVAKIISLMCQ
THTNLSDSSINLPTPNAFWSQSSDSSSTGGANQKEKLTTIENTSWKPDVFVQALKEVVPN
LNWKEVCLGLDHPEFIIKDRIGLNLLITTIRLGFQTSGMGQNFPAECIYRHWTNVDGQLS
LISAILKSPDIYSFADHIYTSVPVEVLKTPPEADNKEIAAWKSVHLVETLLYISDNGHYN
QVLEILKFPLQHCPDILFMALLHSNGPLMMFRQELFTTLVPIFLSNHPNSGPILHHAWNS
TNYGASLKNIIMLSMNEWYIRSDCDQTKLSRILDVAQDLKALSNLLNSREPRFFMFVIDL
ACLASRREYLKLDKWLTDKLREHGDQFVATLCKFLQRRCPQIMGKAADDQMSKMGQLQPE
TLNIIVQCLHAFIPNIHLPDVAEQANTIVTNCNLLLNKRRQFPPAVLRANSHMGIEQPPP
FNTNMQNFQSSMNFSDLSAGMNALNLVNPNSNAFNAFGNMLGNTPASPSRLMSALGSTTS
NSPFPMQVNAPQNMRMGATPTGDRDKAHVVNPLPNQQNPPTQQSLFGDQQPSISSEIEEE
ANGYFQRIYNHPPHPTLSIDEVLDMLKRFSESNVRREREVHFCMLRNLLEEYKFFPQYPD
KELQITAQLFGGMIDRNLVDTYMTLGLALRCVLDSLKKQEGSKMYYFGITALDRFKNRLH
TYHKYCEHVRAIPHFNSFPPHLIKYVEYGCNQELPPEAQLQSVNSSADPSGQLLPNAISQ
MPMSSAQSLYRSNSVTGNIVTQAKSTTATATTPSNSAALPAKSFKSIANATNIDTLLVAN
ETESEKIVMPPDSVQDKTAFIFNNLSQLNLTSKCEEIKEILQKEYYPWMSQYLVLKRASI
EINFHTLYSNFLDALKISELLILTTNETFRNIKVLLRSDKSIANFSDRSLLKNLGHWLGM
LTLGRNRPILHNDIDLKSLVLEAYSKGQQELLYVVPFVAKVLESTAKSRIFKPPNPWTMA
IMNVLAELHQEPELKLNLKFEIEVLCKSLNLEVSELKPAYYLKDPERPSKIIHQLSPPSK
KQEQQIAIQQSTLAAEEPSTSATSLQSASPANSTEAFATGPSEPRYHLNDIIVQNYGSHI
SNLVVLSSTLVLLHPQLKSIVVAALDRTIREWVQPVVDRSVKISSKTTEAIIRKDFALDS
DENTMRQAAHCMARNLAAGMAMITCKDQLIGAIQSNVKTQLINVLAPQQKDQIDMAASMI
ANDNAELVCAFIQKFAIERAIPEIDKALMNEYELRKMARQEGRTFCDHTVLAYQAERIPL
QIRLKVGAVSPNQLAVYEEFGRNVPGFQRIVDRDMFSKQTPTIEQTAQLPMVAAAAAVSN
NNTTNNVASVAASVSNGIQLSNLNNSSQFGAFGQQDDFGLVYEDLQQKIETFISMYNTVP
LLQIQTQCMHSLLECVILVRRTRETSAQQALLKKTVESLMEGFIVLTDYAEQIKMFRDLH
LRILKILQDNRAFGQAWTNKCVSRYLLECPENCRYNVEAVEILITTGCVILPQYDAGLSQ
LIENGSFTAASFATKLLQVHFLDDRANIGSQEGDFNCTITILERLAQHNNGPESLLNLLE
LLRNQQDQSVHLSDRVIHGPTSYIHSGMLQARNTTEVDEPPGFIEKSEYLLKDWITIYHT
PGANRDQLKAFSTFVNKMNIYGILKGDEALTRFFRHATQMCIDLTYRSDPIISKTKIFQW
IDAYVRLIALLVKHSGETSNSTTKLNLLNKILGIVIGILLKDQEIHKHNFQQVGYHRIFI
MLFLELSSSDPVLENIMTSVLTAFCHAYHILRPSLAPGFCYSWLELISHRIFLQRMLATT
PQAKGWSMYSQLLIDLFKFLAPFLRNAELAKSVTLMYKGTLRVLLVLLHDFPEFLCDYHF
GFCDVIPPNCIQMRNLILSAYPRNMRLPDPFTPNLKVDMLSDINTAPRIHCNYAAAIQPL
NFKKDLDSYLKQRSPVTFLAEIRGHLQISNEPGSRYNIPLMNALVLYVGTQAINQIRQKN
QNPTITNIIHNAHMDILQNLAVDLDNEGRYLFLNAIANQLRYPNIHTHYFSCALLYLFDE
ANSEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPSYKFWDHDFVHCAPEIEKLFE
SVARSCMVKTQQTQDFDSVKPMVENPSDL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g4799.t1 Gene3D G3DSA:1.25.40.840 - 820 998 1.4E-70
11 g4799.t1 Gene3D G3DSA:1.25.40.180 - 1057 1312 2.5E-109
8 g4799.t1 Gene3D G3DSA:1.25.40.790 - 1892 2187 2.1E-115
10 g4799.t1 Gene3D G3DSA:1.25.40.800 - 2188 2407 1.3E-98
7 g4799.t1 MobiDBLite mobidb-lite consensus disorder prediction 1331 1358 -
6 g4799.t1 PANTHER PTHR13162 CCR4-NOT TRANSCRIPTION COMPLEX 73 2409 0.0
1 g4799.t1 Pfam PF16418 CCR4-NOT transcription complex subunit 1 HEAT repeat 513 669 1.9E-43
4 g4799.t1 Pfam PF16417 CCR4-NOT transcription complex subunit 1 TTP binding domain 816 995 1.4E-68
2 g4799.t1 Pfam PF16415 CCR4-NOT transcription complex subunit 1 CAF1-binding domain 1088 1309 4.1E-91
3 g4799.t1 Pfam PF12842 Domain of unknown function (DUF3819) 1395 1539 8.8E-51
5 g4799.t1 Pfam PF04054 CCR4-Not complex component, Not1 2044 2403 3.3E-151

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006417 regulation of translation BP
GO:0030015 CCR4-NOT core complex CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values