Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 3A2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g48 g48.t11 isoform g48.t11 411950 412637
chr_3 g48 g48.t11 exon g48.t11.exon1 411950 412338
chr_3 g48 g48.t11 cds g48.t11.CDS1 412098 412338
chr_3 g48 g48.t11 exon g48.t11.exon2 412395 412417
chr_3 g48 g48.t11 cds g48.t11.CDS2 412395 412417
chr_3 g48 g48.t11 exon g48.t11.exon3 412477 412637
chr_3 g48 g48.t11 cds g48.t11.CDS3 412477 412635
chr_3 g48 g48.t11 TTS g48.t11 412694 412694
chr_3 g48 g48.t11 TSS g48.t11 NA NA

Sequences

>g48.t11 Gene=g48 Length=573
AAGTTCAACTTTAATAACTTTTGCTCTCTATGAATTTTCATTAAATCAACAAATTCAAGA
AAGATTGCGTGATGAAATAAATTCGGGAATTGAAAATAATGATGGAAAATTGACTTATGA
ATTATTAAACAGTTTTAAATATTTAGAAATGGTTATTAATGAAACTCTAAGGAAATATCC
ACCGCTTTCTAACATTTTTCGTAAAACTACCAAAGATTATAAAATTCCTGATGAAGATTT
ATTGATTTGTAAAGGAACAGCAGTTATAATTAATACTTATTCATTACATCATGATCCTCA
ATACTTTTCAAAACCTGACAAATTTGATCCGGAAAGGTTTAATGAAGAAAACATTGGAAG
TATTAAACCTTATACATTTTTGCCATTTGGTGCTGGAGCTAGAAATTGCATTGGAATGCG
ATTTGGAATGATGCAAACAAAAATAGCAATCACGAAATTGATTTCAAATTTTTCTTTTAA
GCCATGTTCAAAAACAACAATTCCAATGAAATTTAAACCTTCTTCACCATTCATTTGTCC
TGTTGATGGAATGTTTTTGAGTGTGGAATCATT

>g48.t11 Gene=g48 Length=141
MVINETLRKYPPLSNIFRKTTKDYKIPDEDLLICKGTAVIINTYSLHHDPQYFSKPDKFD
PERFNEENIGSIKPYTFLPFGAGARNCIGMRFGMMQTKIAITKLISNFSFKPCSKTTIPM
KFKPSSPFICPVDGMFLSVES

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g48.t11 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 141 9.0E-52
2 g48.t11 PANTHER PTHR24292 CYTOCHROME P450 1 138 9.8E-53
6 g48.t11 PRINTS PR00385 P450 superfamily signature 1 11 4.4E-7
5 g48.t11 PRINTS PR00463 E-class P450 group I signature 42 66 8.4E-15
4 g48.t11 PRINTS PR00463 E-class P450 group I signature 77 87 8.4E-15
8 g48.t11 PRINTS PR00385 P450 superfamily signature 78 87 4.4E-7
3 g48.t11 PRINTS PR00463 E-class P450 group I signature 87 110 8.4E-15
7 g48.t11 PRINTS PR00385 P450 superfamily signature 87 98 4.4E-7
1 g48.t11 Pfam PF00067 Cytochrome P450 1 130 8.2E-50
10 g48.t11 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 80 89 -
9 g48.t11 SUPERFAMILY SSF48264 Cytochrome P450 1 139 2.36E-49

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values