General information for g4848.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4848 is located on chr_2: 5393556..5394427 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4848 | g4848.t4 | TTS | g4848.t4 | 5390806 | 5390806 |
| chr_2 | g4848 | g4848.t4 | isoform | g4848.t4 | 5391713 | 5392155 |
| chr_2 | g4848 | g4848.t4 | exon | g4848.t4.exon1 | 5391713 | 5392050 |
| chr_2 | g4848 | g4848.t4 | cds | g4848.t4.CDS1 | 5391715 | 5392050 |
| chr_2 | g4848 | g4848.t4 | exon | g4848.t4.exon2 | 5392115 | 5392155 |
| chr_2 | g4848 | g4848.t4 | cds | g4848.t4.CDS2 | 5392115 | 5392117 |
| chr_2 | g4848 | g4848.t4 | TSS | g4848.t4 | 5392735 | 5392735 |
Sequences
>g4848.t4 Gene=g4848 Length=379
GCTATACAGTCGATGTTGTAGCTTCAGTTGCTTTTGGCATGGAATCAAACACAATGAAAG
GAGAACATCCAGAATTATTAAATATTTTCAAAGAACTTTTTGGTCCAGATGGAACTAGTT
TTTTGAAATTTTTCTTTTTAAATGCTTTCCCAAATTTTTCCAAAACTATCAAACTTAGAG
TTTTCTCCAAAGATATTTCGGACTTTTTCATTAATGTTATTAGTCGAAATATTGAAAATC
GTGAAAAAACAAATGACAACAGACAAGATTTCTTAAACATGTTGATTCAGTTGAAGAACA
AAGGATCAATTGATGGAGAATTTTCAACTGAAAACAGAAAAATTACTTTGAATGACGCTT
TGGCTCAAGCATTTGTTTT
>g4848.t4 Gene=g4848 Length=113
MESNTMKGEHPELLNIFKELFGPDGTSFLKFFFLNAFPNFSKTIKLRVFSKDISDFFINV
ISRNIENREKTNDNRQDFLNMLIQLKNKGSIDGEFSTENRKITLNDALAQAFV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g4848.t4 | Coils | Coil | Coil | 68 | 88 | - |
| 4 | g4848.t4 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 1 | 113 | 4.6E-9 |
| 1 | g4848.t4 | PANTHER | PTHR24292 | CYTOCHROME P450 | 1 | 113 | 1.6E-18 |
| 2 | g4848.t4 | PANTHER | PTHR24292:SF95 | CYP6A16, ISOFORM B-RELATED | 1 | 113 | 1.6E-18 |
| 3 | g4848.t4 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 4 | 108 | 1.01E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed