General information for g4851.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucuronosyltransferase 1-7.
Parent gene
- The parent gene g4851 is located on chr_2: 5413649..5414084 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4851 | g4851.t1 | TSS | g4851.t1 | 5411953 | 5411953 |
| chr_2 | g4851 | g4851.t1 | isoform | g4851.t1 | 5412088 | 5413649 |
| chr_2 | g4851 | g4851.t1 | exon | g4851.t1.exon1 | 5412088 | 5412644 |
| chr_2 | g4851 | g4851.t1 | cds | g4851.t1.CDS1 | 5412088 | 5412644 |
| chr_2 | g4851 | g4851.t1 | exon | g4851.t1.exon2 | 5412703 | 5412871 |
| chr_2 | g4851 | g4851.t1 | cds | g4851.t1.CDS2 | 5412703 | 5412871 |
| chr_2 | g4851 | g4851.t1 | exon | g4851.t1.exon3 | 5412927 | 5413649 |
| chr_2 | g4851 | g4851.t1 | cds | g4851.t1.CDS3 | 5412927 | 5413649 |
| chr_2 | g4851 | g4851.t1 | TTS | g4851.t1 | NA | NA |
Sequences
>g4851.t1 Gene=g4851 Length=1449
ATGCAAGTATTAGCAAAAGCATTGGCAAAGCGTGGTCATGAAATTACTTTTATATCTGGA
TTTCCATTTGATAAACCAATTGAAAATTATCGTGACATAAAAATAAAATTGAGTGATGAA
GACTCAAGAGAAATGGAAGAAATGACAAAATCTATGGGAGGAAATCCAGGTTCAAAATCA
TTCTTTCAACTTTTGGGTTTCTTTTCACGAATGTTTTATAAAATTGGCAATGATACTCTT
CAATCAGCTGATGTTAAAAAGTTGATGGCTGAAGAACAATTTGACCTTGTTATTGCTGGC
TATTTTATGACTGAGTATTTACTTGGTCTTGCTACTCATTTCAATTGTCCATCGATAGTC
TTCTTCTCTGGAAATTTAGTTTCTTCACTCCATAAAATGGTAGGCAATCCATTATCGCCG
GCTGGTGCGCCCCATGGAATGTTGAAGAGTAAAGAAATCAACACTTTTAAACTGAGACTT
CAAAACTTTTTACTTCATGGACTTGATTTACTAATTTTTAGACCATATTTTAATTATCGT
GCACGACAAATCTACAATGATAATTTCCCGCCGAATAGATATCGCTCTTATGATGAAACA
TTGACGAATGTTTCAGCCGTCTTAATCAACACACACTTCACATCAGCTGCACCAAGACCC
AATTTACCAAATTTAATAGAAGTTGGTGGATTACAAATTAAACCTAAGAATTCACCTTTG
CCTGATAATTTAAAAAATTTTCTCAACAATGCCAAAAATGGTGCAATTTTATTTTCATTT
GGTTCAAATGCTAAAAGCATGTATTTACCAGAAGAAAAAATCAAGGCACTTTTAAAAGTT
TTTTCAAAACTCAAACAACGAGTTGTAATGAAATGGGAAAGTGACACACTACCTGGAAAA
CCTGACAATGTAATAATTAGCAAATGGTTGCCTCAGGACGATGTTTTGGCTCATTCTTCA
ATGAGATTATTCATTTCGCACTGTGGCTATGGTGGGATTGTTGAAGCGAAATATTATGGT
GTTCCTATTATCGGTGTACCATTAGGAGGTGATCAAGCAAGTAATGCAAAAAAAATTGTT
GAAGAAGGTTGGGCAATTCAGATTAATTTTGAAGACTTAAATGAAGAAACATTGACGGAA
GCAATAAATGAAATTTTGAACAATAAAAAATACAGTGATTATGTCAAAAGAGAATCAGAA
TTATCAAGAGATAGACCAATGCATGCACAAGACACTGCAATTTATTGGGTTGAATATATT
TTAAGACATCATGGTGCACCGCATTTGCATTATCCTGGAGCTGATTTAAATTTCTTTCAA
GATAATTCTATTGATGTTTTTTTATTTATTATTGCTGTTCTTTATGCAACATGGAAGCTA
TTGAAATTTATTTGTAAATTTTGCTTTTGTAGACAGAAGAAAAATATTGAAAAACTTAAG
AAAAATTAA
>g4851.t1 Gene=g4851 Length=482
MQVLAKALAKRGHEITFISGFPFDKPIENYRDIKIKLSDEDSREMEEMTKSMGGNPGSKS
FFQLLGFFSRMFYKIGNDTLQSADVKKLMAEEQFDLVIAGYFMTEYLLGLATHFNCPSIV
FFSGNLVSSLHKMVGNPLSPAGAPHGMLKSKEINTFKLRLQNFLLHGLDLLIFRPYFNYR
ARQIYNDNFPPNRYRSYDETLTNVSAVLINTHFTSAAPRPNLPNLIEVGGLQIKPKNSPL
PDNLKNFLNNAKNGAILFSFGSNAKSMYLPEEKIKALLKVFSKLKQRVVMKWESDTLPGK
PDNVIISKWLPQDDVLAHSSMRLFISHCGYGGIVEAKYYGVPIIGVPLGGDQASNAKKIV
EEGWAIQINFEDLNEETLTEAINEILNNKKYSDYVKRESELSRDRPMHAQDTAIYWVEYI
LRHHGAPHLHYPGADLNFFQDNSIDVFLFIIAVLYATWKLLKFICKFCFCRQKKNIEKLK
KN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g4851.t1 | CDD | cd03784 | GT1_Gtf-like | 4 | 420 | 1.39593E-67 |
| 6 | g4851.t1 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 1 | 195 | 1.3E-8 |
| 7 | g4851.t1 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 235 | 404 | 8.6E-46 |
| 2 | g4851.t1 | PANTHER | PTHR48043:SF10 | EG:EG0003.4 PROTEIN-RELATED | 2 | 453 | 2.7E-108 |
| 3 | g4851.t1 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 2 | 453 | 2.7E-108 |
| 1 | g4851.t1 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 58 | 471 | 8.6E-74 |
| 9 | g4851.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 445 | - |
| 10 | g4851.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 446 | 469 | - |
| 8 | g4851.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 470 | 482 | - |
| 5 | g4851.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 1 | 429 | 1.1E-100 |
| 4 | g4851.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 446 | 465 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00699 (glucuronosyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed