General information for g4851.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4851 is located on chr_2: 5413649..5414084 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4851 | g4851.t3 | TSS | g4851.t3 | 5411953 | 5411953 |
| chr_2 | g4851 | g4851.t3 | isoform | g4851.t3 | 5412088 | 5413272 |
| chr_2 | g4851 | g4851.t3 | exon | g4851.t3.exon1 | 5412088 | 5412644 |
| chr_2 | g4851 | g4851.t3 | cds | g4851.t3.CDS1 | 5412088 | 5412644 |
| chr_2 | g4851 | g4851.t3 | exon | g4851.t3.exon2 | 5412724 | 5412871 |
| chr_2 | g4851 | g4851.t3 | cds | g4851.t3.CDS2 | 5412724 | 5412871 |
| chr_2 | g4851 | g4851.t3 | exon | g4851.t3.exon3 | 5413039 | 5413272 |
| chr_2 | g4851 | g4851.t3 | cds | g4851.t3.CDS3 | 5413039 | 5413068 |
| chr_2 | g4851 | g4851.t3 | TTS | g4851.t3 | NA | NA |
Sequences
>g4851.t3 Gene=g4851 Length=939
ATGCAAGTATTAGCAAAAGCATTGGCAAAGCGTGGTCATGAAATTACTTTTATATCTGGA
TTTCCATTTGATAAACCAATTGAAAATTATCGTGACATAAAAATAAAATTGAGTGATGAA
GACTCAAGAGAAATGGAAGAAATGACAAAATCTATGGGAGGAAATCCAGGTTCAAAATCA
TTCTTTCAACTTTTGGGTTTCTTTTCACGAATGTTTTATAAAATTGGCAATGATACTCTT
CAATCAGCTGATGTTAAAAAGTTGATGGCTGAAGAACAATTTGACCTTGTTATTGCTGGC
TATTTTATGACTGAGTATTTACTTGGTCTTGCTACTCATTTCAATTGTCCATCGATAGTC
TTCTTCTCTGGAAATTTAGTTTCTTCACTCCATAAAATGGTAGGCAATCCATTATCGCCG
GCTGGTGCGCCCCATGGAATGTTGAAGAGTAAAGAAATCAACACTTTTAAACTGAGACTT
CAAAACTTTTTACTTCATGGACTTGATTTACTAATTTTTAGACCATATTTTAATTATCGT
GCACGACAAATCTACAAATATCGCTCTTATGATGAAACATTGACGAATGTTTCAGCCGTC
TTAATCAACACACACTTCACATCAGCTGCACCAAGACCCAATTTACCAAATTTAATAGAA
GTTGGTGGATTACAAATTAAACCTAAGAATTCACCTTTGCCTGATTTTTTTCAAAACTCA
AACAACGAGTTGTAATGAAATGGGAAAGTGACACACTACCTGGAAAACCTGACAATGTAA
TAATTAGCAAATGGTTGCCTCAGGACGATGTTTTGGCTCATTCTTCAATGAGATTATTCA
TTTCGCACTGTGGCTATGGTGGGATTGTTGAAGCGAAATATTATGGTGTTCCTATTATCG
GTGTACCATTAGGAGGTGATCAAGCAAGTAATGCAAAAA
>g4851.t3 Gene=g4851 Length=244
MQVLAKALAKRGHEITFISGFPFDKPIENYRDIKIKLSDEDSREMEEMTKSMGGNPGSKS
FFQLLGFFSRMFYKIGNDTLQSADVKKLMAEEQFDLVIAGYFMTEYLLGLATHFNCPSIV
FFSGNLVSSLHKMVGNPLSPAGAPHGMLKSKEINTFKLRLQNFLLHGLDLLIFRPYFNYR
ARQIYKYRSYDETLTNVSAVLINTHFTSAAPRPNLPNLIEVGGLQIKPKNSPLPDFFQNS
NNEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g4851.t3 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 1 | 186 | 0 |
| 2 | g4851.t3 | PANTHER | PTHR48043:SF10 | EG:EG0003.4 PROTEIN-RELATED | 2 | 240 | 0 |
| 3 | g4851.t3 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 2 | 240 | 0 |
| 1 | g4851.t3 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 57 | 237 | 0 |
| 4 | g4851.t3 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 1 | 234 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed