Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Alpha-N-acetylglucosaminidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4889 g4889.t2 TSS g4889.t2 5820685 5820685
chr_2 g4889 g4889.t2 isoform g4889.t2 5820775 5821713
chr_2 g4889 g4889.t2 exon g4889.t2.exon1 5820775 5821002
chr_2 g4889 g4889.t2 cds g4889.t2.CDS1 5820775 5821002
chr_2 g4889 g4889.t2 exon g4889.t2.exon2 5821116 5821713
chr_2 g4889 g4889.t2 cds g4889.t2.CDS2 5821116 5821712
chr_2 g4889 g4889.t2 TTS g4889.t2 NA NA

Sequences

>g4889.t2 Gene=g4889 Length=826
ATGAAGCATACTATTTTCATCATAGTATCTCTACTATTCTTCACAATTAATTCAATAACT
TGTAAGTTGGATAATGAGGACGATGAGTTAGCAAGAATAATAAGACCAATAACAGATGAA
AAAACACAACAGCAGGCAGCGTTAAATGTAATTAGACGCTTAATTCATGAGCGTGCTGAT
AATGTAGCGATAAAAGTAAACTTTAAATTGCCTGTCAATTATTTTAAGATTCGTAAAACA
AACAACTCGGAAATGTTGAGAATTGAGGCGAGTAGTGGAGTTGCCGCAACTAAAGCTTTT
CATTACTATCTCAAACATTTTTGTGGTGTTCATATCTCATGGGATGGCCATCAGTTAAAA
ACATTAGAGCAACTCGATGAATTTCCTGCAGTTAATATTGAAGTTGAGGCATCAAGTAAA
ATTGTTTATTATCAAAATGTTTGCACTCATAGTTATAGTTATTCTTTTTGGAAATTCGAA
CAATGGCGAGAACACATTGATTTTATTGCACTATCAGGAATTACATTGACATTGGCTCCG
TTTCAAGAGGACGTTTGGACAGAAATTTATCGTGAATATGGAATGACTCAGGATGAAATT
GATGAACATTTAGCTGGTGTTGGTTTCTTTGCATGGCAACGAATGGGAAATATACGTGGA
TGGGGAGGAAAATTATCAAAAAATTTCATAGAATTTGCATCTAATTTGCAACAACAAATA
ATTACTGCACTTAATGAGCTTGGAATTTCTGTTGCGATTCAAGCTTTTGATGGACATTTG
CCAATTCATTTTAAAACAATTTTCCCTAACGCCTCATTTTCATCTA

>g4889.t2 Gene=g4889 Length=275
MKHTIFIIVSLLFFTINSITCKLDNEDDELARIIRPITDEKTQQQAALNVIRRLIHERAD
NVAIKVNFKLPVNYFKIRKTNNSEMLRIEASSGVAATKAFHYYLKHFCGVHISWDGHQLK
TLEQLDEFPAVNIEVEASSKIVYYQNVCTHSYSYSFWKFEQWREHIDFIALSGITLTLAP
FQEDVWTEIYREYGMTQDEIDEHLAGVGFFAWQRMGNIRGWGGKLSKNFIEFASNLQQQI
ITALNELGISVAIQAFDGHLPIHFKTIFPNASFSS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g4889.t2 Gene3D G3DSA:3.30.379.10 Chitobiase 17 138 3.6E-15
7 g4889.t2 Gene3D G3DSA:3.20.20.80 Glycosidases 139 275 5.8E-46
3 g4889.t2 PANTHER PTHR12872 ALPHA-N-ACETYLGLUCOSAMINIDASE 10 274 1.9E-72
4 g4889.t2 PANTHER PTHR12872:SF1 ALPHA-N-ACETYLGLUCOSAMINIDASE 10 274 1.9E-72
1 g4889.t2 Pfam PF12971 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain 46 124 1.3E-17
2 g4889.t2 Pfam PF05089 Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain 143 273 7.4E-46
9 g4889.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
10 g4889.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
11 g4889.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 14 -
12 g4889.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 18 -
8 g4889.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 275 -
5 g4889.t2 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed