Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4919 g4919.t2 isoform g4919.t2 5955472 5958810
chr_2 g4919 g4919.t2 exon g4919.t2.exon1 5955472 5956254
chr_2 g4919 g4919.t2 exon g4919.t2.exon2 5957826 5958358
chr_2 g4919 g4919.t2 cds g4919.t2.CDS1 5958110 5958358
chr_2 g4919 g4919.t2 exon g4919.t2.exon3 5958458 5958810
chr_2 g4919 g4919.t2 cds g4919.t2.CDS2 5958458 5958808
chr_2 g4919 g4919.t2 TSS g4919.t2 NA NA
chr_2 g4919 g4919.t2 TTS g4919.t2 NA NA

Sequences

>g4919.t2 Gene=g4919 Length=1669
GAAACAAATGAAAATTAAATTAAATGTTTTGCTTTTTTCTCCTTTTTACTTTTTAGAAGC
CCTTGGAAACATTTTAGTTTTATTCAACTACGTATGAGTAAAATATTACTTAAATAATTA
ATAATAATACATAAAATCAAACTGAGATTTCAACTTATGAAATATTTATCAAAATAAAAC
TTTAAATCCTTAATTATAATTACATTTTATAACAAAATTTTTTTGCTACCGGTTTATTTT
GAAAAAAAATTTGAGTCGAATTTTGAACCGGTTCAAAAAAATTGTTTTTATCGGAATATT
ACTTTTCATATTTTTTCACCTATAATTTAAATTCTTATCAAAACTCTTGAAAATGGCTTA
ATATAAGAAATAAATTTTTAAGTTTAGTGTGCAATAAATATTAGTACAAAGTGTTGTTGG
GATTTTATAAATGAATTGATTAAAATACATGAAAAAGTTTTTCTTTTAAAAAGAAAAGAT
GGAAGCTTGAAAAATAAATAATGAAACAGGCAAAAAGTGAGAAAAAAGTGATTGGAGAAT
CAGTTGTTCTATAGTGTTTGGTTGTTCGTGTTCCCGTTTTATTATTGTTCAATTTGCTAT
ATTTGCTTTGAAATTATGGGCTATATTGTATAGCCGATAAGATTAATTCATCAAGATTAA
AAGAGAAAAAAGATGACGAAAAAAAAACTTGACTGCGTAAATTTCAAGTTTATATTCTAT
TAATCGTCATTTCGTCTTTATTTACAAATCCGGAACGAGAGATAAAAAATTGAGATTTAC
CTATGTGTGATCGAGCTAGTGTCTAAATGTGAACATATGAACTTTTTCAATTTGTGCTGG
TGATATTCAATATATTATTGAGCCTTTTTAAAGTTTTATTCACAAATCAAATAATAATTA
AATAAATAGTAGAAAAAAGTTTAATTGAAAGTATATAGTGAATAATCAAATTTATTGGCA
AAAAAATTCCCATATTTGATCAAGTGCTTTTATTAGCAAAAAAAATTTAAATAATCTATA
TATGTAGTACTAATTAAGATAAGAAATTAAAATCAATGGTTATCAAAATGTGGGCAATGG
AAACTCGAGAAATCAAAAATTATATATTGAATTACAAAACTGGCAAATTTAAAGAGATAA
AGCATGACAAGGACGAGACATGTGAAGATTTTTGTAAAGAGTTATGCCGCAGATGGAATT
TTCCACCTTTAGTGCAATTGTTGTTTGGCCTTCGTCTACATGGTACTAAAATATGGCTTG
GAAGTGCACGTCAACTTGTTGCTGATAAACATTATGAATTCAGAATTCGAATCAAAATTC
CTAAATTAGCTGATCTAAACAAGCATGATAAGAACACGTTTGACTACTTTTATCATCAAG
TACGCTACGATGTACTCCATAATGATATACCTGGACTTATCAATGAGAATACAAGAAACA
AAATTCTTGGTCTTTGTGTCACAGACATGTATGTTGAGATGTTAGAAAATGAAAATAAAG
ACTATCCGAATGAGACAAGCAGAAAAAAGGCACGTGAGGAGAAAATGAAATATTTGAATG
TAAACTACAAGAATTACATTCCAAGATTTTTATATGAAAAACATTGGGTAATATTGCAAA
TGCGGATCAAAAAATCACTGAAAGGCGTTGATTATAAACATGATCCTCT

>g4919.t2 Gene=g4919 Length=200
MWAMETREIKNYILNYKTGKFKEIKHDKDETCEDFCKELCRRWNFPPLVQLLFGLRLHGT
KIWLGSARQLVADKHYEFRIRIKIPKLADLNKHDKNTFDYFYHQVRYDVLHNDIPGLINE
NTRNKILGLCVTDMYVEMLENENKDYPNETSRKKAREEKMKYLNVNYKNYIPRFLYEKHW
VILQMRIKKSLKGVDYKHDP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g4919.t2 CDD cd14473 FERM_B-lobe 97 195 0.0000875
1 g4919.t2 PANTHER PTHR45807:SF7 TYROSINE-PROTEIN KINASE HOPSCOTCH 13 191 0.0000000
2 g4919.t2 PANTHER PTHR45807 TYROSINE-PROTEIN KINASE HOPSCOTCH 13 191 0.0000000
3 g4919.t2 ProSiteProfiles PS50057 FERM domain profile. 7 200 17.6840000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005856 cytoskeleton CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values