General information for g4920.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4920 is located on chr_2: 5965405..5966004 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4920 | g4920.t15 | TTS | g4920.t15 | 5965329 | 5965329 |
| chr_2 | g4920 | g4920.t15 | isoform | g4920.t15 | 5965405 | 5966004 |
| chr_2 | g4920 | g4920.t15 | exon | g4920.t15.exon1 | 5965405 | 5965604 |
| chr_2 | g4920 | g4920.t15 | cds | g4920.t15.CDS1 | 5965405 | 5965604 |
| chr_2 | g4920 | g4920.t15 | exon | g4920.t15.exon2 | 5965664 | 5965922 |
| chr_2 | g4920 | g4920.t15 | cds | g4920.t15.CDS2 | 5965664 | 5965772 |
| chr_2 | g4920 | g4920.t15 | TSS | g4920.t15 | 5965854 | 5965854 |
| chr_2 | g4920 | g4920.t15 | exon | g4920.t15.exon3 | 5965997 | 5966004 |
Sequences
>g4920.t15 Gene=g4920 Length=467
ATTTTTGTATTAAAACTTCAATAACATACATACATGAAAATGTTTTTATAAACAAAATAG
ATCACAGGTAGATCTTAGTTGTCATAGTGAAATTTGTTTATAAACTTTACTTTCATTACT
TGAAAATAACTTAGACAAAATTTTAATAATTTAATGTGATGGAATCAAAAGCTAATGCAT
TTCAAATTAAACCAGAACTTGAAAATATTATCCCCCCAGGAGAAGTGAAAAAGTTAATTC
AAAAAACACTTAATGATACACTCCTAAACAAATGTTATTCTGTTGAAAATGCAAAAGTTT
GGACAAAAAGTATAGCTGATGATATAAATAGGAATTTAAATTATTCAACACAACGATATA
AGCATGTCGTTCAAGTTTTGCTTACTCAAAAGTTAGGACAAGGCTTCAAATTTACAGCAC
GTAGTCGTTGGGATACTGATACAGATCGTCAAATAACAGATTCGTTC
>g4920.t15 Gene=g4920 Length=103
MESKANAFQIKPELENIIPPGEVKKLIQKTLNDTLLNKCYSVENAKVWTKSIADDINRNL
NYSTQRYKHVVQVLLTQKLGQGFKFTARSRWDTDTDRQITDSF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g4920.t15 | Gene3D | G3DSA:3.30.1140.40 | - | 21 | 103 | 0 |
| 2 | g4920.t15 | PANTHER | PTHR21255:SF7 | TCTEX1 DOMAIN-CONTAINING PROTEIN 2 | 3 | 103 | 0 |
| 3 | g4920.t15 | PANTHER | PTHR21255 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN | 3 | 103 | 0 |
| 1 | g4920.t15 | Pfam | PF03645 | Tctex-1 family | 22 | 102 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K22866 (tctex1 domain-containing protein 2)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed