General information for g4928.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4928 is located on chr_2: 6034582..6036956 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4928 | g4928.t3 | isoform | g4928.t3 | 6027045 | 6036956 |
| chr_2 | g4928 | g4928.t3 | exon | g4928.t3.exon1 | 6027045 | 6027582 |
| chr_2 | g4928 | g4928.t3 | cds | g4928.t3.CDS1 | 6027047 | 6027582 |
| chr_2 | g4928 | g4928.t3 | exon | g4928.t3.exon2 | 6035200 | 6035615 |
| chr_2 | g4928 | g4928.t3 | cds | g4928.t3.CDS2 | 6035200 | 6035398 |
| chr_2 | g4928 | g4928.t3 | TTS | g4928.t3 | 6036447 | 6036447 |
| chr_2 | g4928 | g4928.t3 | exon | g4928.t3.exon3 | 6036760 | 6036956 |
| chr_2 | g4928 | g4928.t3 | TSS | g4928.t3 | 6036960 | 6036960 |
Sequences
>g4928.t3 Gene=g4928 Length=1151
GAAGTTACTGTTCGGTCGAAAACGCATCGAACAAACTGTTGCGAGAGCGGACAAATAAAT
AAAATAATTACAATCATTTAATGTTTGTGAAAGACAAATTGTTGAACTATTTAAATTAAT
TAATTAATTGATTGACATTTTAAGAAGAGTGAAATTGTATAAAGTTTTTAAGTGATTAAT
TTTTTTTTAACAAAAAAGAAACGTATTCATCTTTTACTAATGTGCGATAAGAAAATATTT
TATTAATAATTGAAGCTAATACGCAAGAAAAATTGAAATTGAAGGAACTGATATCATCCA
TTTGATAAAGACAAATGTGCTAATGTGATAAACAACAGGTCTTGCAATAAAAAAATTAAA
AATCATTTTTTTCGTCGTTTAAAGCGAGAAAAAAGAATTATTATGCCAATACTGATGGTG
GCACAAAGTGCAATAAAAAACTTGAACAATATTTGTGAACGTAGTGATATAACTAGCGAC
CAACCATTGGACTTTACCATGTCGAAATTTAAACCTTCTTCACCAATGCGACATCCTTTT
TATCAACAATTTTTTGGCAACAACAATAGCAATGATATTGCTGCAACCGACCGGAATGAA
TATGAGGAACAAGGAAGGACATTGTCAGATAATGAAATGTTGGCGTGGCGACAATTACAA
TTAAATGCGGAGCAGCAGAAGCAGCTAATGCTCTCCACACCTCAAATGTCATCAACACTA
AGCAATAGTGGCAATAGCTTATTGACACTTCAAGACATGATGATGTTGAAGCACCAGCAG
AGCTTTATTAAGCGACGATTAAGCGAAGATGATTTGGATAGTGACAATAAGATGCCAAAA
TTAACTCCCATTAACACTCTGCCATTATCATTAGCAAGTATGCCACTAATGGTCGATTTG
AAGTCATCACCTTATTATGGCGGTGGTGATTCACAATCGAGTGATACAGCTGCAACTGCT
TTTGGAGCATTTAGTGGTAGCAGCATGAGTCATAGAGAAAAATTACAAAATCAACAATAC
CTCGATCGTTTACGGCGTATGAATGAGCGCGGTAAAGAAAGAATGGCTCGCAGTCGCGTG
AATTTTGAACCGAGTAATGTGGCTAAAACAGTTCGCGAGGAATTGGCATCTCGAAAGCAG
CAAGCCAAAAA
>g4928.t3 Gene=g4928 Length=245
MVAQSAIKNLNNICERSDITSDQPLDFTMSKFKPSSPMRHPFYQQFFGNNNSNDIAATDR
NEYEEQGRTLSDNEMLAWRQLQLNAEQQKQLMLSTPQMSSTLSNSGNSLLTLQDMMMLKH
QQSFIKRRLSEDDLDSDNKMPKLTPINTLPLSLASMPLMVDLKSSPYYGGGDSQSSDTAA
TAFGAFSGSSMSHREKLQNQQYLDRLRRMNERGKERMARSRVNFEPSNVAKTVREELASR
KQQAK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g4928.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 245 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed