Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Mannosyl-oligosaccharide glucosidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4935 g4935.t6 isoform g4935.t6 6090384 6091438
chr_2 g4935 g4935.t6 exon g4935.t6.exon1 6090384 6091060
chr_2 g4935 g4935.t6 cds g4935.t6.CDS1 6090386 6091060
chr_2 g4935 g4935.t6 exon g4935.t6.exon2 6091119 6091438
chr_2 g4935 g4935.t6 cds g4935.t6.CDS2 6091119 6091196
chr_2 g4935 g4935.t6 TSS g4935.t6 6091494 6091494
chr_2 g4935 g4935.t6 TTS g4935.t6 NA NA

Sequences

>g4935.t6 Gene=g4935 Length=997
ATGGTAAATAAAACTTATTTTAGAAATATTCATTTAATTTTTAATAAAAATTCGACATGC
ATTTAATTTATCAATAGGTGAGAAATCGAAAACAGCATCAGCAAAATGAAAATTCGTCCA
AACAAAAATCCACATCTTCAAAAAATGAAGAGAAGGCCAGCAGTAGTAATAGCAATTCAA
CAAGCTCAACAACTACGACACACAATAGTAATTCAAGTCCTACATTCTCTTCATCTAGAA
AGATGATTCCATCATGGTATATTTCAATCGGTGTAGCCAGTATTGCTGTTGTCATGTATT
TTGTTTATCAGGGATATTTGGAAACTCGAGTAAACACACCGCTAGATGAAAAAAGAATTG
TTCCGAAACAACCAGACTCGGAGAAGTTCTGGAACACTTATCGTGCAAACACATATTTCG
GTTTAAAAACTCGCGATCCAAACTCAATGGTGCTTGGTTTGATGTGGTATTTTCCAAATA
AACTACGACCAAATGGTGATGGCATAAGACATTGGTGTAAATTAGAAGATAATCTTAAAA
AGTATGGCTGGTTGCAGCACGATGGCAAAAATTTTGGTATACAAGAAATTCATGAAGATA
ATTACGTACTTGAAACTTCATTCATCAAGTTTTATACGGGAAAATTTGGTGGTGAATGGA
CAGCGCGTGTAAGTGTGACACCAAAAAATCCTGCTGCTATCACTGAACCAATCTCACTGA
TTTGGTATGCTGCACTTGATGAGAAAAGTGAAGGAAATTTGAAAGCAACATATACAAATT
CAATCTATGGGATAGAAGGTGATACTCGTGGATTGGGAAGTTTCAAAGTCAATTTACACA
ACTCTAAAGGCAACATTATAAAACAATCATACTTGAGTACAGTTGCTCCAAGCCTACAAT
ATCTTAAAGAAACTGTTCTTTCAAATCTACGACTTGCAAGCGATAAGATGACTAAAGAAA
AATTTATAATTTTAGCAGGCGATATGTTAGATGATAA

>g4935.t6 Gene=g4935 Length=251
MIPSWYISIGVASIAVVMYFVYQGYLETRVNTPLDEKRIVPKQPDSEKFWNTYRANTYFG
LKTRDPNSMVLGLMWYFPNKLRPNGDGIRHWCKLEDNLKKYGWLQHDGKNFGIQEIHEDN
YVLETSFIKFYTGKFGGEWTARVSVTPKNPAAITEPISLIWYAALDEKSEGNLKATYTNS
IYGIEGDTRGLGSFKVNLHNSKGNIIKQSYLSTVAPSLQYLKETVLSNLRLASDKMTKEK
FIILAGDMLDD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g4935.t6 Gene3D G3DSA:2.70.98.110 - 39 249 3.3E-48
2 g4935.t6 PANTHER PTHR10412:SF11 MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE 5 240 2.1E-58
3 g4935.t6 PANTHER PTHR10412 MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE 5 240 2.1E-58
1 g4935.t6 Pfam PF16923 Glycosyl hydrolase family 63 N-terminal domain 49 244 2.3E-47
7 g4935.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
8 g4935.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 22 -
6 g4935.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 23 251 -
4 g4935.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 22 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004573 mannosyl-oligosaccharide glucosidase activity MF
GO:0009311 oligosaccharide metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values