Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4936 g4936.t1 TTS g4936.t1 6092015 6092015
chr_2 g4936 g4936.t1 isoform g4936.t1 6092152 6095477
chr_2 g4936 g4936.t1 exon g4936.t1.exon1 6092152 6092529
chr_2 g4936 g4936.t1 cds g4936.t1.CDS1 6092152 6092529
chr_2 g4936 g4936.t1 exon g4936.t1.exon2 6092604 6094424
chr_2 g4936 g4936.t1 cds g4936.t1.CDS2 6092604 6094424
chr_2 g4936 g4936.t1 exon g4936.t1.exon3 6094514 6094755
chr_2 g4936 g4936.t1 cds g4936.t1.CDS3 6094514 6094755
chr_2 g4936 g4936.t1 exon g4936.t1.exon4 6095336 6095352
chr_2 g4936 g4936.t1 cds g4936.t1.CDS4 6095336 6095352
chr_2 g4936 g4936.t1 exon g4936.t1.exon5 6095458 6095477
chr_2 g4936 g4936.t1 cds g4936.t1.CDS5 6095458 6095477
chr_2 g4936 g4936.t1 TSS g4936.t1 6095568 6095568

Sequences

>g4936.t1 Gene=g4936 Length=2478
ATGAATCAAAAATTCTTTATAAATATTTTATATATTGATATGCAATCGAATTACTTTCAA
CGATCACAGAGCAAAGTCTGGTTTGGCTCGCAACAACATAGCGTTTACGATAATTTTTAT
TCGCTGCCAAATTATTATGGTACAAAAAATACACTACAATCAATCACAGAACAAGAAGAA
TCTTTTTCTTCACCTAAAAATGAAAATGATGAACGCAAAAGAAGTTTTTTAATATGGGGT
AATCGTCATAGTCCATCTAGTCAAAGTCATAAAAGTCAGGATTCGGGTTTCTCAGATACA
GAAAATTCGCCACAAAATGCAGAAGCAGTAGCAAAAAATCAAAGTATTGTTTCCGAGAGC
CAATCAAATCAGAGTTCACCATCTGCTAGTAGTAGAATTGCAACCCCTCCGACTGTAATA
AGACGACCGAATAAATCAGATCAGAATCATATATATGAGGAAATATCGTCTGCACGCCGC
ATTTCGTTCAGTGCACCATCATCGCCATTGAATAATAATAATAGCAGTAACAGTGAGACC
GAAAATATCAACAATGAGTTGAAATCGCAGATCGACGGTATCAATTTCAACACGACATCA
CCGATGAATGCCAATGACTCGGCAAGGTCTTCGTGCCGCTCATGCAAAATCAAAAGAAGT
CGAGTGATAACTAAGCATGAGCAGAGTTCACGCAGCAAACAAAATCTTTCATTGGATAGC
AATAATAATGACAGCTTCACAGAGTCTTATAATAATGAGACAGTATATTTTGGTTGTGGT
AGTGATAGTGTAATAATGGAAGAAAAGTCATTGCTTTTAAACTCCCCTAGTCATAAACAT
ATAAATATGGGACGGATTTTCCCAACTGAAACATCAACCCCAAAAAAATCATCATCAGAA
AATAAAAGTTGTAACGGAATTTTAGAAACACTTTCATCACTTTTGCCTCAACCAGTTGTA
TATAAAAATGAATTATTAAATGGACATTTTGAATCTGTTCAATCTTGGATTGATGGTCTA
AAATATTCAATTTCATCAGAAGTCATGTCAACTTTGCAATCAAAATCTATTGAGACAGAA
AATTTCGTACTGACACCGACATATGCCTTTAAGTTAATTCGCAGCATTCAAAATCGAGCT
CTTGCATTGCAGCGAGAATTTGAAATTGTCGAGACTTGTGAGAACAGAAATGATTTTCTT
CCTGCTGTGCAACATTTAGCTGACTTGCTTATCGAATTCATTTCGAGACAGGAGCAGAGA
AGAATTTATTTCAAGCAGAATCAAAAGCAATATAAGAAACTTTGTGAAAATTTGGAGAGT
CTTCGCGAGATGTTGCGTGATTTGAAAAATATTTGTTCAAAAATTGATGTCGATGATCTC
GAAGAATTTCCAATTTGTGATGATATGCAGTTGATAAAACGATATTTTGTGATGACAATT
AAAATTCTTTTCAAAGTACTAGTATCTGCAATTGTTGAAAATATTGAGCATGCAAAGAAT
GAAATCATGTTGCGATCAAATATCACGCATATTGCTAATTTATTGTCAGGTTATAGTGGA
GAATATGAGGGCACATTTGCTTCTCTTAATGATGCTTTCGTAGCAAATAGTTTAGTTCGA
GTGTTGCTTCTAGTCTGTTTAGAGAATAAGAGCTCATGGATGAGAGCTCTCGCGCTACGG
ACATTAGCACTTGTGTGTGTCAGTGAAGAAACGATTCAGCAATTTGAAATTAACAGTGGC
TTTGAAATTCTACGTGATATCATCATCGATAGACGTACATTGTCAAATGAACGTTTAGAA
CAAGAAGTTCGCGAGTCAGTTTCGCTTTTAGCATCAATCACTGCTCCATGGCAGTCATCG
GGTAGCTGCAATAATTTCAAAGAGTTGAAAGATTATGCAGAAGATTATATTGAAGGCATT
TCAAAGCTTTTAGAAATAACAAAAAGTCCACAAACGATTCTAATATGCGTAGCCGTGCTA
AATAATTTGTCACACATTGAATCTTCATCGATTTATTCACTGATTTCACACCAGACACTC
TCGATCTTGACGAATGTTTTCGCACAGCAAGTCAGTGGCGAGTACACAATTTTCTTCGTG
GAACAGACAACCTCAGTTATTTTTAACATGAGTCAGAACAAAAAGTCACATTATCATCTT
ACTTCGCGAAGTATTTTAAATTTCATTTTCGACATTTTTCTTACTATTCATCACTTAGAG
TATGACAGTCAATCTCAGTCGAAAGCCAAACGAAAAAGTATTAAAAATATTTTAAACACT
TTAAAACAATTGGAATTGACATCATCAAGTTATGAAATTACAGAAAATATAAGATCAATA
ATTACAAAAATTCATAGAAAACTATTTGAAATGGATTTTGGAGAGACGACAGCTGTTGGA
AATGATTTATTTGAAATAAGCAGAACAAGCAAAAATGTTACAAAAATCAGTATTTACTCT
CAAGAAACATTTCTTTAA

>g4936.t1 Gene=g4936 Length=825
MNQKFFINILYIDMQSNYFQRSQSKVWFGSQQHSVYDNFYSLPNYYGTKNTLQSITEQEE
SFSSPKNENDERKRSFLIWGNRHSPSSQSHKSQDSGFSDTENSPQNAEAVAKNQSIVSES
QSNQSSPSASSRIATPPTVIRRPNKSDQNHIYEEISSARRISFSAPSSPLNNNNSSNSET
ENINNELKSQIDGINFNTTSPMNANDSARSSCRSCKIKRSRVITKHEQSSRSKQNLSLDS
NNNDSFTESYNNETVYFGCGSDSVIMEEKSLLLNSPSHKHINMGRIFPTETSTPKKSSSE
NKSCNGILETLSSLLPQPVVYKNELLNGHFESVQSWIDGLKYSISSEVMSTLQSKSIETE
NFVLTPTYAFKLIRSIQNRALALQREFEIVETCENRNDFLPAVQHLADLLIEFISRQEQR
RIYFKQNQKQYKKLCENLESLREMLRDLKNICSKIDVDDLEEFPICDDMQLIKRYFVMTI
KILFKVLVSAIVENIEHAKNEIMLRSNITHIANLLSGYSGEYEGTFASLNDAFVANSLVR
VLLLVCLENKSSWMRALALRTLALVCVSEETIQQFEINSGFEILRDIIIDRRTLSNERLE
QEVRESVSLLASITAPWQSSGSCNNFKELKDYAEDYIEGISKLLEITKSPQTILICVAVL
NNLSHIESSSIYSLISHQTLSILTNVFAQQVSGEYTIFFVEQTTSVIFNMSQNKKSHYHL
TSRSILNFIFDIFLTIHHLEYDSQSQSKAKRKSIKNILNTLKQLELTSSSYEITENIRSI
ITKIHRKLFEMDFGETTAVGNDLFEISRTSKNVTKISIYSQETFL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g4936.t1 Coils Coil Coil 424 451 -
4 g4936.t1 MobiDBLite mobidb-lite consensus disorder prediction 80 149 -
5 g4936.t1 MobiDBLite mobidb-lite consensus disorder prediction 80 145 -
3 g4936.t1 MobiDBLite mobidb-lite consensus disorder prediction 219 240 -
1 g4936.t1 PANTHER PTHR21386 INSCUTEABLE 318 764 1.8E-54
2 g4936.t1 SUPERFAMILY SSF48371 ARM repeat 542 787 1.3E-6

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008356 asymmetric cell division BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values