General information for g4936.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4936 is located on chr_2: 6093839..6095477 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4936 | g4936.t10 | isoform | g4936.t10 | 6093839 | 6095477 |
| chr_2 | g4936 | g4936.t10 | exon | g4936.t10.exon1 | 6093839 | 6094424 |
| chr_2 | g4936 | g4936.t10 | cds | g4936.t10.CDS1 | 6093840 | 6094424 |
| chr_2 | g4936 | g4936.t10 | exon | g4936.t10.exon2 | 6094514 | 6095477 |
| chr_2 | g4936 | g4936.t10 | cds | g4936.t10.CDS2 | 6094514 | 6094753 |
| chr_2 | g4936 | g4936.t10 | TTS | g4936.t10 | 6095359 | 6095359 |
| chr_2 | g4936 | g4936.t10 | TSS | g4936.t10 | 6095568 | 6095568 |
Sequences
>g4936.t10 Gene=g4936 Length=1550
ATGAATCAAAAATTCTTTATGTAAATAAAGGTGTAATCGCAGTGAAACACACATTGATGA
GTTAAATAACGAGTGTTAATCAATTGACAGCAACTAAAAATAAATTTATTATAAAATCGA
AAAAGAAATATTTTATATATTGGTGAGTAGTGTAATATATGTGACACGTTAAAAAATGTG
ATCTCAATGCAGGATAAAGACAGTTAATCATCATCATTATTGTTATTAAGAGTTTGCTAC
CTAGATCATATGCAAATGTAGAACAAATCAATCGCAATTAAACAGTAAATCAGTTCAATC
ATTGAATATTAATTTCCTGAGTGATTAAGAGAAAGAAATAGTATTTTGTTGTTTTCATGA
TAAAATGCAAAACAGGTAGTAAGCATTAAGAATAAGCAGCACGTTCGGATATAAAAAATT
CGAAGAAAATGTTGACGAGTGTGATTCAGGCATTCTATGTGAATATTTTTGAGATGTGAT
GTAAATTAATGCCTCGAAGGAATTTTCTGTTCGCGTGAACAGCGAAGCGAATGAATGAAT
GCGTCATTTTTATAAGCTGTAATTTCATTCATCCACTCAATATATGTATAGTTTATCTCG
CTCACTCTCTACGATGATGTTGTTGTGTAAAAGCCTCATTGTATGATTCACCTTTCTATT
AGGAAACAATTAGCGAGCGCATAAGTCACAACATTTTTTTATTTATCGTTTATTTTCATT
AGATATGCAATCGAATTACTTTCAACGATCACAGAGCAAAGTCTGGTTTGGCTCGCAACA
ACATAGCGTTTACGATAATTTTTATTCGCTGCCAAATTATTATGGTACAAAAAATACACT
ACAATCAATCACAGAACAAGAAGAATCTTTTTCTTCACCTAAAAATGAAAATGATGAACG
CAAAAGAAGTTTTTTAATATGGGGTAATCGTCATAGTCCATCTAGTCAAAGTCATAAAAG
TCAGGATTCGGGTTTCTCAGATACAGAAAATTCGCCACAAAATGCAGAAGCAGTAGCAAA
AAATCAAAGTATTGTTTCCGAGAGCCAATCAAATCAGAGTTCACCATCTGCTAGTAGTAG
AATTGCAACCCCTCCGACTGTAATAAGACGACCGAATAAATCAGATCAGAATCATATATA
TGAGGAAATATCGTCTGCACGCCGCATTTCGTTCAGTGCACCATCATCGCCATTGAATAA
TAATAATAGCAGTAACAGTGAGACCGAAAATATCAACAATGAGTTGAAATCGCAGATCGA
CGGTATCAATTTCAACACGACATCACCGATGAATGCCAATGACTCGGCAAGGTCTTCGTG
CCGCTCATGCAAAATCAAAAGAAGTCGAGTGATAACTAAGCATGAGCAGAGTTCACGCAG
CAAACAAAATCTTTCATTGGATAGCAATAATAATGACAGCTTCACAGAGTCTTATAATAA
TGAGACAGTATATTTTGGTTGTGGTAGTGATAGTGTAATAATGGAAGAAAAGTCATTGCT
TTTAAACTCCCCTAGTCATAAACATATAAATATGGGACGGATTTTCCCAA
>g4936.t10 Gene=g4936 Length=275
MQSNYFQRSQSKVWFGSQQHSVYDNFYSLPNYYGTKNTLQSITEQEESFSSPKNENDERK
RSFLIWGNRHSPSSQSHKSQDSGFSDTENSPQNAEAVAKNQSIVSESQSNQSSPSASSRI
ATPPTVIRRPNKSDQNHIYEEISSARRISFSAPSSPLNNNNSSNSETENINNELKSQIDG
INFNTTSPMNANDSARSSCRSCKIKRSRVITKHEQSSRSKQNLSLDSNNNDSFTESYNNE
TVYFGCGSDSVIMEEKSLLLNSPSHKHINMGRIFP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g4936.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 136 | - |
| g4936.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 132 | - |
| g4936.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 227 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
