Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4936 g4936.t4 TTS g4936.t4 6092015 6092015
chr_2 g4936 g4936.t4 isoform g4936.t4 6092152 6093433
chr_2 g4936 g4936.t4 exon g4936.t4.exon1 6092152 6092529
chr_2 g4936 g4936.t4 cds g4936.t4.CDS1 6092152 6092529
chr_2 g4936 g4936.t4 exon g4936.t4.exon2 6092604 6093147
chr_2 g4936 g4936.t4 cds g4936.t4.CDS2 6092604 6093044
chr_2 g4936 g4936.t4 exon g4936.t4.exon3 6093249 6093433
chr_2 g4936 g4936.t4 TSS g4936.t4 NA NA

Sequences

>g4936.t4 Gene=g4936 Length=1107
TCAAGCAGAATCAAAAGCAATATAAGAAACTTTGTGAAAATTTGGAGAGTCTTCGCGAGA
TGTTGCGTGATTTGAAAAATATTTGTTCAAAAATTGATGTCGATGATCTCGAAGAATTTC
CAATTTGTGATGATATGCAGTTGATAAAACGATATTTTGTGATGACAATTAAAATTCTTT
TCAAATGGAGAATATGAGGGCACATTTGCTTCTCTTAATGATGCTTTCGTAGCAAATAGT
TTAGTTCGAGTGTTGCTTCTAGTCTGTTTAGAGAATAAGAGCTCATGGATGAGAGCTCTC
GCGCTACGGACATTAGCACTTGTGTGTGTCAGTGAAGAAACGATTCAGCAATTTGAAATT
AACAGTGGCTTTGAAATTCTACGTGATATCATCATCGATAGACGTACATTGTCAAATGAA
CGTTTAGAACAAGAAGTTCGCGAGTCAGTTTCGCTTTTAGCATCAATCACTGCTCCATGG
CAGTCATCGGGTAGCTGCAATAATTTCAAAGAGTTGAAAGATTATGCAGAAGATTATATT
GAAGGCATTTCAAAGCTTTTAGAAATAACAAAAAGTCCACAAACGATTCTAATATGCGTA
GCCGTGCTAAATAATTTGTCACACATTGAATCTTCATCGATTTATTCACTGATTTCACAC
CAGACACTCTCGATCTTGACGAATGTTTTCGCACAGCAAGTCAGTGGCGAGTACACAATT
TTCTTCGTGGAACAGACAACCTCAGTTATTTTTAACATGAGTCAGAACAAAAAGTCACAT
TATCATCTTACTTCGCGAAGTATTTTAAATTTCATTTTCGACATTTTTCTTACTATTCAT
CACTTAGAGTATGACAGTCAATCTCAGTCGAAAGCCAAACGAAAAAGTATTAAAAATATT
TTAAACACTTTAAAACAATTGGAATTGACATCATCAAGTTATGAAATTACAGAAAATATA
AGATCAATAATTACAAAAATTCATAGAAAACTATTTGAAATGGATTTTGGAGAGACGACA
GCTGTTGGAAATGATTTATTTGAAATAAGCAGAACAAGCAAAAATGTTACAAAAATCAGT
ATTTACTCTCAAGAAACATTTCTTTAA

>g4936.t4 Gene=g4936 Length=272
MRALALRTLALVCVSEETIQQFEINSGFEILRDIIIDRRTLSNERLEQEVRESVSLLASI
TAPWQSSGSCNNFKELKDYAEDYIEGISKLLEITKSPQTILICVAVLNNLSHIESSSIYS
LISHQTLSILTNVFAQQVSGEYTIFFVEQTTSVIFNMSQNKKSHYHLTSRSILNFIFDIF
LTIHHLEYDSQSQSKAKRKSIKNILNTLKQLELTSSSYEITENIRSIITKIHRKLFEMDF
GETTAVGNDLFEISRTSKNVTKISIYSQETFL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g4936.t4 PANTHER PTHR21386 INSCUTEABLE 1 211 1.0E-31
4 g4936.t4 Phobius SIGNAL_PEPTIDE Signal peptide region 1 15 -
5 g4936.t4 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
6 g4936.t4 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 11 -
7 g4936.t4 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 12 15 -
3 g4936.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 16 272 -
2 g4936.t4 SUPERFAMILY SSF48371 ARM repeat 2 234 4.66E-6

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008356 asymmetric cell division BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values