General information for g4936.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4936 is located on chr_2: 6093839..6095477 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4936 | g4936.t5 | TTS | g4936.t5 | 6092015 | 6092015 |
| chr_2 | g4936 | g4936.t5 | isoform | g4936.t5 | 6092152 | 6094423 |
| chr_2 | g4936 | g4936.t5 | exon | g4936.t5.exon1 | 6092152 | 6092529 |
| chr_2 | g4936 | g4936.t5 | cds | g4936.t5.CDS1 | 6092152 | 6092529 |
| chr_2 | g4936 | g4936.t5 | exon | g4936.t5.exon2 | 6092604 | 6094423 |
| chr_2 | g4936 | g4936.t5 | cds | g4936.t5.CDS2 | 6092604 | 6094100 |
| chr_2 | g4936 | g4936.t5 | TSS | g4936.t5 | 6094740 | 6094740 |
Sequences
>g4936.t5 Gene=g4936 Length=2198
ATTCGGGTTTCTCAGATACAGAAAATTCGCCACAAAATGCAGAAGCAGTAGCAAAAAATC
AAAGTATTGTTTCCGAGAGCCAATCAAATCAGAGTTCACCATCTGCTAGTAGTAGAATTG
CAACCCCTCCGACTGTAATAAGACGACCGAATAAATCAGATCAGAATCATATATATGAGG
AAATATCGTCTGCACGCCGCATTTCGTTCAGTGCACCATCATCGCCATTGAATAATAATA
ATAGCAGTAACAGTGAGACCGAAAATATCAACAATGAGTTGAAATCGCAGATCGACGGTA
TCAATTTCAACACGACATCACCGATGAATGCCAATGACTCGGCAAGGTCTTCGTGCCGCT
CATGCAAAATCAAAAGAAGTCGAGTGATAACTAAGCATGAGCAGAGTTCACGCAGCAAAC
AAAATCTTTCATTGGATAGCAATAATAATGACAGCTTCACAGAGTCTTATAATAATGAGA
CAGTATATTTTGGTTGTGGTAGTGATAGTGTAATAATGGAAGAAAAGTCATTGCTTTTAA
ACTCCCCTAGTCATAAACATATAAATATGGGACGGATTTTCCCAACTGAAACATCAACCC
CAAAAAAATCATCATCAGAAAATAAAAGTTGTAACGGAATTTTAGAAACACTTTCATCAC
TTTTGCCTCAACCAGTTGTATATAAAAATGAATTATTAAATGGACATTTTGAATCTGTTC
AATCTTGGATTGATGGTCTAAAATATTCAATTTCATCAGAAGTCATGTCAACTTTGCAAT
CAAAATCTATTGAGACAGAAAATTTCGTACTGACACCGACATATGCCTTTAAGTTAATTC
GCAGCATTCAAAATCGAGCTCTTGCATTGCAGCGAGAATTTGAAATTGTCGAGACTTGTG
AGAACAGAAATGATTTTCTTCCTGCTGTGCAACATTTAGCTGACTTGCTTATCGAATTCA
TTTCGAGACAGGAGCAGAGAAGAATTTATTTCAAGCAGAATCAAAAGCAATATAAGAAAC
TTTGTGAAAATTTGGAGAGTCTTCGCGAGATGTTGCGTGATTTGAAAAATATTTGTTCAA
AAATTGATGTCGATGATCTCGAAGAATTTCCAATTTGTGATGATATGCAGTTGATAAAAC
GATATTTTGTGATGACAATTAAAATTCTTTTCAAAGTACTAGTATCTGCAATTGTTGAAA
ATATTGAGCATGCAAAGAATGAAATCATGTTGCGATCAAATATCACGCATATTGCTAATT
TATTGTCAGGTTATAGTGGAGAATATGAGGGCACATTTGCTTCTCTTAATGATGCTTTCG
TAGCAAATAGTTTAGTTCGAGTGTTGCTTCTAGTCTGTTTAGAGAATAAGAGCTCATGGA
TGAGAGCTCTCGCGCTACGGACATTAGCACTTGTGTGTGTCAGTGAAGAAACGATTCAGC
AATTTGAAATTAACAGTGGCTTTGAAATTCTACGTGATATCATCATCGATAGACGTACAT
TGTCAAATGAACGTTTAGAACAAGAAGTTCGCGAGTCAGTTTCGCTTTTAGCATCAATCA
CTGCTCCATGGCAGTCATCGGGTAGCTGCAATAATTTCAAAGAGTTGAAAGATTATGCAG
AAGATTATATTGAAGGCATTTCAAAGCTTTTAGAAATAACAAAAAGTCCACAAACGATTC
TAATATGCGTAGCCGTGCTAAATAATTTGTCACACATTGAATCTTCATCGATTTATTCAC
TGATTTCACACCAGACACTCTCGATCTTGACGAATGTTTTCGCACAGCAAGTCAGTGGCG
AGTACACAATTTTCTTCGTGGAACAGACAACCTCAGTTATTTTTAACATGAGTCAGAACA
AAAAGTCACATTATCATCTTACTTCGCGAAGTATTTTAAATTTCATTTTCGACATTTTTC
TTACTATTCATCACTTAGAGTATGACAGTCAATCTCAGTCGAAAGCCAAACGAAAAAGTA
TTAAAAATATTTTAAACACTTTAAAACAATTGGAATTGACATCATCAAGTTATGAAATTA
CAGAAAATATAAGATCAATAATTACAAAAATTCATAGAAAACTATTTGAAATGGATTTTG
GAGAGACGACAGCTGTTGGAAATGATTTATTTGAAATAAGCAGAACAAGCAAAAATGTTA
CAAAAATCAGTATTTACTCTCAAGAAACATTTCTTTAA
>g4936.t5 Gene=g4936 Length=624
MNANDSARSSCRSCKIKRSRVITKHEQSSRSKQNLSLDSNNNDSFTESYNNETVYFGCGS
DSVIMEEKSLLLNSPSHKHINMGRIFPTETSTPKKSSSENKSCNGILETLSSLLPQPVVY
KNELLNGHFESVQSWIDGLKYSISSEVMSTLQSKSIETENFVLTPTYAFKLIRSIQNRAL
ALQREFEIVETCENRNDFLPAVQHLADLLIEFISRQEQRRIYFKQNQKQYKKLCENLESL
REMLRDLKNICSKIDVDDLEEFPICDDMQLIKRYFVMTIKILFKVLVSAIVENIEHAKNE
IMLRSNITHIANLLSGYSGEYEGTFASLNDAFVANSLVRVLLLVCLENKSSWMRALALRT
LALVCVSEETIQQFEINSGFEILRDIIIDRRTLSNERLEQEVRESVSLLASITAPWQSSG
SCNNFKELKDYAEDYIEGISKLLEITKSPQTILICVAVLNNLSHIESSSIYSLISHQTLS
ILTNVFAQQVSGEYTIFFVEQTTSVIFNMSQNKKSHYHLTSRSILNFIFDIFLTIHHLEY
DSQSQSKAKRKSIKNILNTLKQLELTSSSYEITENIRSIITKIHRKLFEMDFGETTAVGN
DLFEISRTSKNVTKISIYSQETFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g4936.t5 | Coils | Coil | Coil | 223 | 250 | - |
| 1 | g4936.t5 | PANTHER | PTHR21386 | INSCUTEABLE | 117 | 563 | 9.4E-55 |
| 2 | g4936.t5 | SUPERFAMILY | SSF48371 | ARM repeat | 341 | 586 | 1.01E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008356 | asymmetric cell division | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
