General information for g4936.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4936 is located on chr_2: 6093839..6095477 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4936 | g4936.t6 | TTS | g4936.t6 | 6092015 | 6092015 |
| chr_2 | g4936 | g4936.t6 | isoform | g4936.t6 | 6092152 | 6095477 |
| chr_2 | g4936 | g4936.t6 | exon | g4936.t6.exon1 | 6092152 | 6092529 |
| chr_2 | g4936 | g4936.t6 | cds | g4936.t6.CDS1 | 6092152 | 6092529 |
| chr_2 | g4936 | g4936.t6 | exon | g4936.t6.exon2 | 6092604 | 6094424 |
| chr_2 | g4936 | g4936.t6 | cds | g4936.t6.CDS2 | 6092604 | 6094424 |
| chr_2 | g4936 | g4936.t6 | exon | g4936.t6.exon3 | 6094514 | 6094755 |
| chr_2 | g4936 | g4936.t6 | cds | g4936.t6.CDS3 | 6094514 | 6094753 |
| chr_2 | g4936 | g4936.t6 | exon | g4936.t6.exon4 | 6095336 | 6095477 |
| chr_2 | g4936 | g4936.t6 | TSS | g4936.t6 | 6095568 | 6095568 |
Sequences
>g4936.t6 Gene=g4936 Length=2583
ATGAATCAAAAATTCTTTATGTAAATAAAGGTGTAATCGCAGTGAAACACACATTGATGA
GTTAAATAACGAGTGTTAATCAATTGACAGCAACTAAAAATAAATTTATTATAAAATCGA
AAAAGAAATATTTTATATATTGATATGCAATCGAATTACTTTCAACGATCACAGAGCAAA
GTCTGGTTTGGCTCGCAACAACATAGCGTTTACGATAATTTTTATTCGCTGCCAAATTAT
TATGGTACAAAAAATACACTACAATCAATCACAGAACAAGAAGAATCTTTTTCTTCACCT
AAAAATGAAAATGATGAACGCAAAAGAAGTTTTTTAATATGGGGTAATCGTCATAGTCCA
TCTAGTCAAAGTCATAAAAGTCAGGATTCGGGTTTCTCAGATACAGAAAATTCGCCACAA
AATGCAGAAGCAGTAGCAAAAAATCAAAGTATTGTTTCCGAGAGCCAATCAAATCAGAGT
TCACCATCTGCTAGTAGTAGAATTGCAACCCCTCCGACTGTAATAAGACGACCGAATAAA
TCAGATCAGAATCATATATATGAGGAAATATCGTCTGCACGCCGCATTTCGTTCAGTGCA
CCATCATCGCCATTGAATAATAATAATAGCAGTAACAGTGAGACCGAAAATATCAACAAT
GAGTTGAAATCGCAGATCGACGGTATCAATTTCAACACGACATCACCGATGAATGCCAAT
GACTCGGCAAGGTCTTCGTGCCGCTCATGCAAAATCAAAAGAAGTCGAGTGATAACTAAG
CATGAGCAGAGTTCACGCAGCAAACAAAATCTTTCATTGGATAGCAATAATAATGACAGC
TTCACAGAGTCTTATAATAATGAGACAGTATATTTTGGTTGTGGTAGTGATAGTGTAATA
ATGGAAGAAAAGTCATTGCTTTTAAACTCCCCTAGTCATAAACATATAAATATGGGACGG
ATTTTCCCAACTGAAACATCAACCCCAAAAAAATCATCATCAGAAAATAAAAGTTGTAAC
GGAATTTTAGAAACACTTTCATCACTTTTGCCTCAACCAGTTGTATATAAAAATGAATTA
TTAAATGGACATTTTGAATCTGTTCAATCTTGGATTGATGGTCTAAAATATTCAATTTCA
TCAGAAGTCATGTCAACTTTGCAATCAAAATCTATTGAGACAGAAAATTTCGTACTGACA
CCGACATATGCCTTTAAGTTAATTCGCAGCATTCAAAATCGAGCTCTTGCATTGCAGCGA
GAATTTGAAATTGTCGAGACTTGTGAGAACAGAAATGATTTTCTTCCTGCTGTGCAACAT
TTAGCTGACTTGCTTATCGAATTCATTTCGAGACAGGAGCAGAGAAGAATTTATTTCAAG
CAGAATCAAAAGCAATATAAGAAACTTTGTGAAAATTTGGAGAGTCTTCGCGAGATGTTG
CGTGATTTGAAAAATATTTGTTCAAAAATTGATGTCGATGATCTCGAAGAATTTCCAATT
TGTGATGATATGCAGTTGATAAAACGATATTTTGTGATGACAATTAAAATTCTTTTCAAA
GTACTAGTATCTGCAATTGTTGAAAATATTGAGCATGCAAAGAATGAAATCATGTTGCGA
TCAAATATCACGCATATTGCTAATTTATTGTCAGGTTATAGTGGAGAATATGAGGGCACA
TTTGCTTCTCTTAATGATGCTTTCGTAGCAAATAGTTTAGTTCGAGTGTTGCTTCTAGTC
TGTTTAGAGAATAAGAGCTCATGGATGAGAGCTCTCGCGCTACGGACATTAGCACTTGTG
TGTGTCAGTGAAGAAACGATTCAGCAATTTGAAATTAACAGTGGCTTTGAAATTCTACGT
GATATCATCATCGATAGACGTACATTGTCAAATGAACGTTTAGAACAAGAAGTTCGCGAG
TCAGTTTCGCTTTTAGCATCAATCACTGCTCCATGGCAGTCATCGGGTAGCTGCAATAAT
TTCAAAGAGTTGAAAGATTATGCAGAAGATTATATTGAAGGCATTTCAAAGCTTTTAGAA
ATAACAAAAAGTCCACAAACGATTCTAATATGCGTAGCCGTGCTAAATAATTTGTCACAC
ATTGAATCTTCATCGATTTATTCACTGATTTCACACCAGACACTCTCGATCTTGACGAAT
GTTTTCGCACAGCAAGTCAGTGGCGAGTACACAATTTTCTTCGTGGAACAGACAACCTCA
GTTATTTTTAACATGAGTCAGAACAAAAAGTCACATTATCATCTTACTTCGCGAAGTATT
TTAAATTTCATTTTCGACATTTTTCTTACTATTCATCACTTAGAGTATGACAGTCAATCT
CAGTCGAAAGCCAAACGAAAAAGTATTAAAAATATTTTAAACACTTTAAAACAATTGGAA
TTGACATCATCAAGTTATGAAATTACAGAAAATATAAGATCAATAATTACAAAAATTCAT
AGAAAACTATTTGAAATGGATTTTGGAGAGACGACAGCTGTTGGAAATGATTTATTTGAA
ATAAGCAGAACAAGCAAAAATGTTACAAAAATCAGTATTTACTCTCAAGAAACATTTCTT
TAA
>g4936.t6 Gene=g4936 Length=812
MQSNYFQRSQSKVWFGSQQHSVYDNFYSLPNYYGTKNTLQSITEQEESFSSPKNENDERK
RSFLIWGNRHSPSSQSHKSQDSGFSDTENSPQNAEAVAKNQSIVSESQSNQSSPSASSRI
ATPPTVIRRPNKSDQNHIYEEISSARRISFSAPSSPLNNNNSSNSETENINNELKSQIDG
INFNTTSPMNANDSARSSCRSCKIKRSRVITKHEQSSRSKQNLSLDSNNNDSFTESYNNE
TVYFGCGSDSVIMEEKSLLLNSPSHKHINMGRIFPTETSTPKKSSSENKSCNGILETLSS
LLPQPVVYKNELLNGHFESVQSWIDGLKYSISSEVMSTLQSKSIETENFVLTPTYAFKLI
RSIQNRALALQREFEIVETCENRNDFLPAVQHLADLLIEFISRQEQRRIYFKQNQKQYKK
LCENLESLREMLRDLKNICSKIDVDDLEEFPICDDMQLIKRYFVMTIKILFKVLVSAIVE
NIEHAKNEIMLRSNITHIANLLSGYSGEYEGTFASLNDAFVANSLVRVLLLVCLENKSSW
MRALALRTLALVCVSEETIQQFEINSGFEILRDIIIDRRTLSNERLEQEVRESVSLLASI
TAPWQSSGSCNNFKELKDYAEDYIEGISKLLEITKSPQTILICVAVLNNLSHIESSSIYS
LISHQTLSILTNVFAQQVSGEYTIFFVEQTTSVIFNMSQNKKSHYHLTSRSILNFIFDIF
LTIHHLEYDSQSQSKAKRKSIKNILNTLKQLELTSSSYEITENIRSIITKIHRKLFEMDF
GETTAVGNDLFEISRTSKNVTKISIYSQETFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g4936.t6 | Coils | Coil | Coil | 411 | 438 | - |
| 3 | g4936.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 136 | - |
| 4 | g4936.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 132 | - |
| 5 | g4936.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 227 | - |
| 1 | g4936.t6 | PANTHER | PTHR21386 | INSCUTEABLE | 305 | 751 | 1.6E-54 |
| 2 | g4936.t6 | SUPERFAMILY | SSF48371 | ARM repeat | 529 | 774 | 2.26E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008356 | asymmetric cell division | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
