General information for g4936.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4936 is located on chr_2: 6093839..6095477 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4936 | g4936.t7 | isoform | g4936.t7 | 6093222 | 6095477 |
| chr_2 | g4936 | g4936.t7 | exon | g4936.t7.exon1 | 6093222 | 6094424 |
| chr_2 | g4936 | g4936.t7 | cds | g4936.t7.CDS1 | 6093222 | 6094424 |
| chr_2 | g4936 | g4936.t7 | exon | g4936.t7.exon2 | 6094514 | 6094755 |
| chr_2 | g4936 | g4936.t7 | cds | g4936.t7.CDS2 | 6094514 | 6094753 |
| chr_2 | g4936 | g4936.t7 | exon | g4936.t7.exon3 | 6095336 | 6095477 |
| chr_2 | g4936 | g4936.t7 | TSS | g4936.t7 | 6095568 | 6095568 |
| chr_2 | g4936 | g4936.t7 | TTS | g4936.t7 | NA | NA |
Sequences
>g4936.t7 Gene=g4936 Length=1587
ATGAATCAAAAATTCTTTATGTAAATAAAGGTGTAATCGCAGTGAAACACACATTGATGA
GTTAAATAACGAGTGTTAATCAATTGACAGCAACTAAAAATAAATTTATTATAAAATCGA
AAAAGAAATATTTTATATATTGATATGCAATCGAATTACTTTCAACGATCACAGAGCAAA
GTCTGGTTTGGCTCGCAACAACATAGCGTTTACGATAATTTTTATTCGCTGCCAAATTAT
TATGGTACAAAAAATACACTACAATCAATCACAGAACAAGAAGAATCTTTTTCTTCACCT
AAAAATGAAAATGATGAACGCAAAAGAAGTTTTTTAATATGGGGTAATCGTCATAGTCCA
TCTAGTCAAAGTCATAAAAGTCAGGATTCGGGTTTCTCAGATACAGAAAATTCGCCACAA
AATGCAGAAGCAGTAGCAAAAAATCAAAGTATTGTTTCCGAGAGCCAATCAAATCAGAGT
TCACCATCTGCTAGTAGTAGAATTGCAACCCCTCCGACTGTAATAAGACGACCGAATAAA
TCAGATCAGAATCATATATATGAGGAAATATCGTCTGCACGCCGCATTTCGTTCAGTGCA
CCATCATCGCCATTGAATAATAATAATAGCAGTAACAGTGAGACCGAAAATATCAACAAT
GAGTTGAAATCGCAGATCGACGGTATCAATTTCAACACGACATCACCGATGAATGCCAAT
GACTCGGCAAGGTCTTCGTGCCGCTCATGCAAAATCAAAAGAAGTCGAGTGATAACTAAG
CATGAGCAGAGTTCACGCAGCAAACAAAATCTTTCATTGGATAGCAATAATAATGACAGC
TTCACAGAGTCTTATAATAATGAGACAGTATATTTTGGTTGTGGTAGTGATAGTGTAATA
ATGGAAGAAAAGTCATTGCTTTTAAACTCCCCTAGTCATAAACATATAAATATGGGACGG
ATTTTCCCAACTGAAACATCAACCCCAAAAAAATCATCATCAGAAAATAAAAGTTGTAAC
GGAATTTTAGAAACACTTTCATCACTTTTGCCTCAACCAGTTGTATATAAAAATGAATTA
TTAAATGGACATTTTGAATCTGTTCAATCTTGGATTGATGGTCTAAAATATTCAATTTCA
TCAGAAGTCATGTCAACTTTGCAATCAAAATCTATTGAGACAGAAAATTTCGTACTGACA
CCGACATATGCCTTTAAGTTAATTCGCAGCATTCAAAATCGAGCTCTTGCATTGCAGCGA
GAATTTGAAATTGTCGAGACTTGTGAGAACAGAAATGATTTTCTTCCTGCTGTGCAACAT
TTAGCTGACTTGCTTATCGAATTCATTTCGAGACAGGAGCAGAGAAGAATTTATTTCAAG
CAGAATCAAAAGCAATATAAGAAACTTTGTGAAAATTTGGAGAGTCTTCGCGAGATGTTG
CGTGATTTGAAAAATATTTGTTCAAAAATTGATGTCGATGATCTCGAAGAATTTCCAATT
TGTGATGATATGCAGTTGATAAAACGATATTTTGTGATGACAATTAAAATTCTTTTCAAA
GTACTAGTATCTGCAATTGTTGAAAAT
>g4936.t7 Gene=g4936 Length=481
MQSNYFQRSQSKVWFGSQQHSVYDNFYSLPNYYGTKNTLQSITEQEESFSSPKNENDERK
RSFLIWGNRHSPSSQSHKSQDSGFSDTENSPQNAEAVAKNQSIVSESQSNQSSPSASSRI
ATPPTVIRRPNKSDQNHIYEEISSARRISFSAPSSPLNNNNSSNSETENINNELKSQIDG
INFNTTSPMNANDSARSSCRSCKIKRSRVITKHEQSSRSKQNLSLDSNNNDSFTESYNNE
TVYFGCGSDSVIMEEKSLLLNSPSHKHINMGRIFPTETSTPKKSSSENKSCNGILETLSS
LLPQPVVYKNELLNGHFESVQSWIDGLKYSISSEVMSTLQSKSIETENFVLTPTYAFKLI
RSIQNRALALQREFEIVETCENRNDFLPAVQHLADLLIEFISRQEQRRIYFKQNQKQYKK
LCENLESLREMLRDLKNICSKIDVDDLEEFPICDDMQLIKRYFVMTIKILFKVLVSAIVE
N
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g4936.t7 | Coils | Coil | Coil | 411 | 438 | - |
| 1 | g4936.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 136 | - |
| 2 | g4936.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 132 | - |
| 3 | g4936.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 227 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
