General information for g4938.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4938 is located on chr_2: 6107179..6110230 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4938 | g4938.t3 | isoform | g4938.t3 | 6106371 | 6110230 |
| chr_2 | g4938 | g4938.t3 | exon | g4938.t3.exon1 | 6106371 | 6107347 |
| chr_2 | g4938 | g4938.t3 | TSS | g4938.t3 | 6106592 | 6106592 |
| chr_2 | g4938 | g4938.t3 | TTS | g4938.t3 | 6107043 | 6107043 |
| chr_2 | g4938 | g4938.t3 | cds | g4938.t3.CDS1 | 6107179 | 6107347 |
| chr_2 | g4938 | g4938.t3 | exon | g4938.t3.exon2 | 6107661 | 6107774 |
| chr_2 | g4938 | g4938.t3 | cds | g4938.t3.CDS2 | 6107661 | 6107774 |
| chr_2 | g4938 | g4938.t3 | exon | g4938.t3.exon3 | 6110179 | 6110230 |
| chr_2 | g4938 | g4938.t3 | cds | g4938.t3.CDS3 | 6110179 | 6110219 |
Sequences
>g4938.t3 Gene=g4938 Length=1143
TTTGAAGTTTTGGTCCGATTCAATTGTGTGTCCATGAAAAAATGATTGGAATGATGGAAG
AATGAGATCAAAAGTTGGTTTTTGACAATTGAATAATTTTTATTGAAAAGTTTTGATATT
AGAAATTAATATTTAATTTATTGTTTTAGTTTTATTAAAGTGTTAAAAGAAACAAAAATT
GTTTTACTGTTGTGTATAAGTACATTATTGACATGAATATTAACAACATCAGCCATCTTG
AAAAGCAGAAAAGTTTCTTTGTGTAGTGATCGCAACTTTTATTAACTATTTTTCGATTTT
AAGTGACTAAAGTGGAAAAATCTTAATCAGAGTTGCTTATCGTATACATTAAAAGTGAAG
AACACCAGCTAAACAACGCTTAACACGACAAAAATTGTAAAATTAAAAATTGTGAAGTAA
TTGGAAAAACACAAAAAAGTTGCAAAATCGTACGACTAGTTTTATTTGTGTGATTTTTCA
AAGCTAAAAAAATTGAGTTTTCTTGCTTTAAATAAAAATTTATACGTTTGTGATATATCT
TTACGAGTTTTGTACCTAATCAGTGATTATAATAAACCAACAATAAAAAAGGATTCCATT
TTGGTTTTTTCTTCGCATTCGTTGTTCATCGCTCAAAGGAAGGCAAGAAAAAAAAGAAAT
AAGAGTTTGAGGGAAAAAAATAGAAAGTACAAAACCAAGAGAGAAAAAGAAATACAGTCA
GTCAGTCACAGTATATATAAAATTTTCTCAGTCTTTCGTTTCAACATAAAAAAAATAAAA
CGAGAAAACATTCACCAATTCAAGCATAATGAAAGTAGAAATAAACTCAGCTGCTGACTT
TTTGATGAACTTATTAAGAGTGCGTCAGCAAGAGAATTCTTTAAATGAAACTCAATTACA
TTCGTTTCGAGGCTCGCTGATCACAGTTCTTCAAGAAAAATTTAGAGATCATTGGTACAT
TGAGAATCCACGCAAAGGAAGTGGCTTTCGATGCATTAGAGTTAATACTGAAATATCGGA
TCCTTGCATCGCGAAAGCTGCCAACAACTGCAGAATCGGCACAAGAGTGATTCGTGAACT
TTTACCACAAGGAGATCACACTTTGGATAGATCCATCAACTGTCTGCTATAGAATTGGAG
AAA
>g4938.t3 Gene=g4938 Length=107
MKVEINSAADFLMNLLRVRQQENSLNETQLHSFRGSLITVLQEKFRDHWYIENPRKGSGF
RCIRVNTEISDPCIAKAANNCRIGTRVIRELLPQGDHTLDRSINCLL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g4938.t3 | Gene3D | G3DSA:1.20.120.1120 | - | 1 | 99 | 0.0e+00 |
| 2 | g4938.t3 | PANTHER | PTHR22978 | B-CELL TRANSLOCATION GENE | 1 | 94 | 0.0e+00 |
| 3 | g4938.t3 | PRINTS | PR00310 | Anti-proliferative protein BTG1 family signature | 9 | 33 | 1.9e-05 |
| 4 | g4938.t3 | PRINTS | PR00310 | Anti-proliferative protein BTG1 family signature | 34 | 63 | 1.9e-05 |
| 1 | g4938.t3 | Pfam | PF07742 | BTG family | 1 | 94 | 0.0e+00 |
| 6 | g4938.t3 | SMART | SM00099 | btg1_nr | 1 | 97 | 0.0e+00 |
| 5 | g4938.t3 | SUPERFAMILY | SSF160696 | BTG domain-like | 1 | 95 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
