Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable cytochrome P450 12a5, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4971 g4971.t4 TSS g4971.t4 6214628 6214628
chr_2 g4971 g4971.t4 isoform g4971.t4 6214668 6215925
chr_2 g4971 g4971.t4 exon g4971.t4.exon1 6214668 6214967
chr_2 g4971 g4971.t4 cds g4971.t4.CDS1 6214668 6214967
chr_2 g4971 g4971.t4 exon g4971.t4.exon2 6215019 6215063
chr_2 g4971 g4971.t4 cds g4971.t4.CDS2 6215019 6215063
chr_2 g4971 g4971.t4 exon g4971.t4.exon3 6215136 6215248
chr_2 g4971 g4971.t4 cds g4971.t4.CDS3 6215136 6215248
chr_2 g4971 g4971.t4 exon g4971.t4.exon4 6215305 6215580
chr_2 g4971 g4971.t4 cds g4971.t4.CDS4 6215305 6215580
chr_2 g4971 g4971.t4 exon g4971.t4.exon5 6215639 6215784
chr_2 g4971 g4971.t4 cds g4971.t4.CDS5 6215639 6215784
chr_2 g4971 g4971.t4 exon g4971.t4.exon6 6215923 6215925
chr_2 g4971 g4971.t4 cds g4971.t4.CDS6 6215923 6215924
chr_2 g4971 g4971.t4 TTS g4971.t4 6216616 6216616

Sequences

>g4971.t4 Gene=g4971 Length=883
ATGTCAAAAAAAATTTTAGTCCAGCAATCTGTTTTTATCTTTCGACGCTTACTTAATACT
ACGTCTACTTCATTTAACCTTGATGTTCAATCGACTGATGTAAAACCTTTTTCACAAGTT
CCATCATTGTCTGCATTTGAAATCATAGCAAGAAATTTACCAGGTGGTAAATTTTATAAC
AAATCAATGAAAGATTTGCACTTAATAATGAATGCTGAGTTCGGCAATATAGTTCGATTT
GCTGGTATATTTGGCCGACCACCATTATTATTTGTTTATGATGCAAATGACTTCGAAAAG
ACATTGAGAACTGAAGGTGTATGGCCAGAAAGAATTGCATTAGAAGGAGAAGAATGGCAT
AAAATGAGAACAATAACTAATCCGATTTTGATGCAACCAAAAATTATTAAACTTTATTGC
AAACAAGTTGATGAAATAGCAAAGGAATTTGTTGGAATCATGCGGAAATTAAGGGATGAG
AAATGTGAAATGCCTGCTGATTTTAGCAATTACATAAATTCATGGTCGTTAGAGTCTATT
GTTGCTATTGCTTTAGAAAGACGTTTAAATATACTGAGTGGGTCCTCAAATGATGAAAAA
GCTCAAGAGCTCATCAAAAATATTCGTCTCTTCTTTGAAAAATCTTTCCTTTATGATGTA
CTTCCTTCAGTTTGGCGTTACTATGAAACGAAAGGTTTCAAGAATTTCCTGAAAGTATAT
GATACAATAACAAACATTGTGCTTCACTACATAGATATTGCAATAAAGGAAATGGAAAAA
AGTGAGTCATCTTCTTTGAATCATGAAGATAGCATATTACGGAAACTTTTGAAGATTGAC
AAAAAAGCGGCAGTTGTGATGGCGAGTGATATGTTGTTAGACT

>g4971.t4 Gene=g4971 Length=294
MSKKILVQQSVFIFRRLLNTTSTSFNLDVQSTDVKPFSQVPSLSAFEIIARNLPGGKFYN
KSMKDLHLIMNAEFGNIVRFAGIFGRPPLLFVYDANDFEKTLRTEGVWPERIALEGEEWH
KMRTITNPILMQPKIIKLYCKQVDEIAKEFVGIMRKLRDEKCEMPADFSNYINSWSLESI
VAIALERRLNILSGSSNDEKAQELIKNIRLFFEKSFLYDVLPSVWRYYETKGFKNFLKVY
DTITNIVLHYIDIAIKEMEKSESSSLNHEDSILRKLLKIDKKAAVVMASDMLLD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g4971.t4 Gene3D G3DSA:1.10.630.10 Cytochrome p450 29 293 0
2 g4971.t4 PANTHER PTHR24291:SF155 CYTOCHROME P450 301B1 32 292 0
3 g4971.t4 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 32 292 0
1 g4971.t4 Pfam PF00067 Cytochrome P450 112 277 0
4 g4971.t4 SUPERFAMILY SSF48264 Cytochrome P450 66 278 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed