Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4991 g4991.t2 TSS g4991.t2 6339886 6339886
chr_2 g4991 g4991.t2 isoform g4991.t2 6339996 6340963
chr_2 g4991 g4991.t2 exon g4991.t2.exon1 6339996 6340023
chr_2 g4991 g4991.t2 exon g4991.t2.exon2 6340078 6340392
chr_2 g4991 g4991.t2 cds g4991.t2.CDS1 6340240 6340392
chr_2 g4991 g4991.t2 exon g4991.t2.exon3 6340511 6340963
chr_2 g4991 g4991.t2 cds g4991.t2.CDS2 6340511 6340963
chr_2 g4991 g4991.t2 TTS g4991.t2 6341147 6341147

Sequences

>g4991.t2 Gene=g4991 Length=796
ATGGATGTCCCTCGTGAATCGGCAGTAAATATCGACTGCTGTAAATTTTTTAAGAAATAA
AAACGTATCGAGAAGTAGTATTTTACAAAAAAGAAACTTTCTGGCCAGTAAAGGCCTTAC
TGACGAGGAAATACAGCAAGCATTTGAAAGAGTCGGAATATTTGCCAAAGTTAATACACT
TGATAGTGCAATGGACGAAACAACTATAAATATCCCACAATCACAACCACTTGTACATCA
TTCCTACAAGCATCAAATGACAACATTTGAAAAAGTAAAAGATGTTTTGAGTTCTATGGC
ATTGATCTCGGGAATTGCATACGCGATTTACATGTTTTATAAGAAATATATTGAGCCATT
TTTATTCGGAAGAAAGAAGAAGGGCGATAAAATAGACGAACTTGCTAAAACAACAAAAGC
AATAAATGGAGAACTTATCAGAGTGCGAGAAGAGATAAATCTTCAAAAACAAACACAGGA
ATCTTCAAACAAACTTATTCAAAACACACTGCAAACGTTCAAAACAGAGATTGAAACGAT
CAAAGGCATTTTGCTGAATCATAGAAATTTTTCCTCTGCTCCGTCTTCCTCTGGCATCAA
TTTACCGAAAATTCCCTCATGGCAATTGAGCAGTAACAAATCGAAGAATGATGAAAAGCG
AAGTGATCATGATGATGATAAACATTCAAACTCAAGTGAAAACGAGACAGAGGTCATTGT
CGAGGAAAAAAACCAGAAACAGAACCAGAAACAGCGATCTCCGGCCAATAGTGATTCTTC
GCTTGAAATTATGTAA

>g4991.t2 Gene=g4991 Length=201
MDETTINIPQSQPLVHHSYKHQMTTFEKVKDVLSSMALISGIAYAIYMFYKKYIEPFLFG
RKKKGDKIDELAKTTKAINGELIRVREEINLQKQTQESSNKLIQNTLQTFKTEIETIKGI
LLNHRNFSSAPSSSGINLPKIPSWQLSSNKSKNDEKRSDHDDDKHSNSSENETEVIVEEK
NQKQNQKQRSPANSDSSLEIM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g4991.t2 MobiDBLite mobidb-lite consensus disorder prediction 132 149 -
4 g4991.t2 MobiDBLite mobidb-lite consensus disorder prediction 132 201 -
5 g4991.t2 MobiDBLite mobidb-lite consensus disorder prediction 150 185 -
2 g4991.t2 MobiDBLite mobidb-lite consensus disorder prediction 186 201 -
7 g4991.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 31 -
8 g4991.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 32 50 -
6 g4991.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 51 201 -
1 g4991.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 32 50 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed