General information for g5011.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ATP-binding cassette sub-family G member 4.
Parent gene
- The parent gene g5011 is located on chr_2: 6432849..6438838 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5011 | g5011.t5 | isoform | g5011.t5 | 6427997 | 6438838 |
| chr_2 | g5011 | g5011.t5 | exon | g5011.t5.exon1 | 6427997 | 6428322 |
| chr_2 | g5011 | g5011.t5 | cds | g5011.t5.CDS1 | 6427998 | 6428294 |
| chr_2 | g5011 | g5011.t5 | exon | g5011.t5.exon2 | 6428809 | 6428930 |
| chr_2 | g5011 | g5011.t5 | exon | g5011.t5.exon3 | 6432846 | 6433187 |
| chr_2 | g5011 | g5011.t5 | TTS | g5011.t5 | 6432852 | 6432852 |
| chr_2 | g5011 | g5011.t5 | exon | g5011.t5.exon4 | 6438630 | 6438838 |
| chr_2 | g5011 | g5011.t5 | TSS | g5011.t5 | 6438848 | 6438848 |
Sequences
>g5011.t5 Gene=g5011 Length=999
TGACTGCGTTCATTTTCAGACGTGTTTCGCTTAGTACGATAAAAAATTTTTAAAAAAGCA
AAAAAGTCTAATTAATGCCATAATTTAAATCGAAGAACGGAAGGAGAGCAAAAAAAAGTC
GAACAGTCGATGACAATAAAAGACTACAAAAAAATTATAATAAAAAGCTATAATTCGAAA
TAATAGTTGTTGAATATTCATCGATAAAGCATTTCCTGTTGACGATTACCAAATTTGAAT
TGACGTCATTATGAGCTCTTTAGTGAAATGATAAAATTGATAAAAATAAAATTACAACAG
TAATTATAACCTTCATTAACTCTAGCTTAAAAGAGAGTAATAAACTGAAAAAAACTATGA
ATTAAAAGTTAGTGGAACGTGCAATTAGTGAGAAAATTAACAAAACAGAACAATTAAAAT
ATTTTGAATAAAGAATAGACATTATTAAGAGTGATTAAACATGGATATGTCGAGTAGTGA
GGATTCATCAAGTCGGATTGACATCAATTTCGAGAACATCGTTTACACAGTTTCTGTGCC
AAAGCAAAAAGAAAAGAAAGATGTACTCAAAGGTGTTTCTGGTAGATTTAAATCCGGCGA
ATTAACGGCAATTTTGGGACCCTCAGGCGCCGGCAAATCAAGTTTATTGAACATTCTTAC
TGGGTTTACGTAACACACATGGTGTAAAAGGTGTACTTGACATGGGAGAAAAATCGTCAT
CAAATGGACAAAAAATGTGTAGTTACATTTTACAAGAAGACAATCTTTATCCATTTTTCA
CGGTCAATGAGACAATGGTGATTGCAGCTAATTTAAAAATTTCAAGTCGTTGCATGAGTC
AAAAGGAAAAGCAGAGTTTGATTGACAATATTTTAGATACACTTCATCTCACAGATGCAA
AAGAAACTCGTTGCCGAAATCTTTCTGGCGGACAAAAGAAAAGACTTTCAATTGCATTAG
AACTCATAGATGATCCACCAATATTATTTTTAGATGAAC
>g5011.t5 Gene=g5011 Length=99
MGEKSSSNGQKMCSYILQEDNLYPFFTVNETMVIAANLKISSRCMSQKEKQSLIDNILDT
LHLTDAKETRCRNLSGGQKKRLSIALELIDDPPILFLDE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g5011.t5 | Gene3D | G3DSA:3.40.50.300 | - | 2 | 99 | 0 |
| 2 | g5011.t5 | PANTHER | PTHR48041 | ABC TRANSPORTER G FAMILY MEMBER 28 | 4 | 99 | 0 |
| 3 | g5011.t5 | PANTHER | PTHR48041:SF32 | PROTEIN WHITE-LIKE PROTEIN | 4 | 99 | 0 |
| 1 | g5011.t5 | Pfam | PF00005 | ABC transporter | 10 | 99 | 0 |
| 4 | g5011.t5 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 11 | 99 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5011/g5011.t5; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5011.t5.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
