General information for g5012.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Collagen alpha-1(IV) chain.
Parent gene
- The parent gene g5012 is located on chr_2: 6463528..6463962 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5012 | g5012.t1 | TSS | g5012.t1 | 6444628 | 6444628 |
| chr_2 | g5012 | g5012.t1 | isoform | g5012.t1 | 6445003 | 6463528 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon1 | 6445003 | 6445052 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS1 | 6445003 | 6445052 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon2 | 6449432 | 6449697 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS2 | 6449432 | 6449697 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon3 | 6451055 | 6451099 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS3 | 6451055 | 6451099 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon4 | 6451173 | 6451207 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS4 | 6451173 | 6451207 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon5 | 6451424 | 6451461 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS5 | 6451424 | 6451461 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon6 | 6451540 | 6451556 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS6 | 6451540 | 6451556 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon7 | 6451710 | 6451763 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS7 | 6451710 | 6451763 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon8 | 6451823 | 6451848 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS8 | 6451823 | 6451848 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon9 | 6452048 | 6452085 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS9 | 6452048 | 6452085 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon10 | 6452612 | 6452748 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS10 | 6452612 | 6452748 |
| chr_2 | g5012 | g5012.t1 | TTS | g5012.t1 | 6452677 | 6452677 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon11 | 6452826 | 6452865 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS11 | 6452826 | 6452865 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon12 | 6453029 | 6453082 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS12 | 6453029 | 6453082 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon13 | 6453144 | 6453238 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS13 | 6453144 | 6453238 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon14 | 6453393 | 6453437 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS14 | 6453393 | 6453437 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon15 | 6453499 | 6453543 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS15 | 6453499 | 6453543 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon16 | 6453606 | 6453631 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS16 | 6453606 | 6453631 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon17 | 6454985 | 6455012 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS17 | 6454985 | 6455012 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon18 | 6455083 | 6455100 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS18 | 6455083 | 6455100 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon19 | 6455212 | 6455256 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS19 | 6455212 | 6455256 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon20 | 6455327 | 6455353 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS20 | 6455327 | 6455353 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon21 | 6455762 | 6455798 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS21 | 6455762 | 6455798 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon22 | 6455971 | 6456008 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS22 | 6455971 | 6456008 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon23 | 6456074 | 6456098 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS23 | 6456074 | 6456098 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon24 | 6456171 | 6456199 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS24 | 6456171 | 6456199 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon25 | 6456292 | 6456358 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS25 | 6456292 | 6456358 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon26 | 6456506 | 6456537 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS26 | 6456506 | 6456537 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon27 | 6457357 | 6457419 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS27 | 6457357 | 6457419 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon28 | 6457490 | 6457548 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS28 | 6457490 | 6457548 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon29 | 6457718 | 6457746 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS29 | 6457718 | 6457746 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon30 | 6457885 | 6457909 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS30 | 6457885 | 6457909 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon31 | 6457964 | 6458010 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS31 | 6457964 | 6458010 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon32 | 6458066 | 6458106 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS32 | 6458066 | 6458106 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon33 | 6458176 | 6458211 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS33 | 6458176 | 6458211 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon34 | 6458279 | 6458368 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS34 | 6458279 | 6458368 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon35 | 6458477 | 6458502 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS35 | 6458477 | 6458502 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon36 | 6458608 | 6458644 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS36 | 6458608 | 6458644 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon37 | 6458770 | 6458805 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS37 | 6458770 | 6458805 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon38 | 6458993 | 6459109 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS38 | 6458993 | 6459109 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon39 | 6459239 | 6459310 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS39 | 6459239 | 6459310 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon40 | 6459379 | 6459397 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS40 | 6459379 | 6459397 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon41 | 6459510 | 6459535 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS41 | 6459510 | 6459535 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon42 | 6459621 | 6459647 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS42 | 6459621 | 6459647 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon43 | 6459710 | 6459736 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS43 | 6459710 | 6459736 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon44 | 6459805 | 6459864 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS44 | 6459805 | 6459864 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon45 | 6459964 | 6460075 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS45 | 6459964 | 6460075 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon46 | 6460173 | 6460252 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS46 | 6460173 | 6460252 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon47 | 6460415 | 6460459 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS47 | 6460415 | 6460459 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon48 | 6460695 | 6460730 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS48 | 6460695 | 6460730 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon49 | 6460805 | 6460832 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS49 | 6460805 | 6460832 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon50 | 6460909 | 6460934 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS50 | 6460909 | 6460934 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon51 | 6461067 | 6461180 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS51 | 6461067 | 6461180 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon52 | 6461247 | 6461273 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS52 | 6461247 | 6461273 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon53 | 6461387 | 6461439 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS53 | 6461387 | 6461439 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon54 | 6461547 | 6461621 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS54 | 6461547 | 6461621 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon55 | 6461958 | 6462053 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS55 | 6461958 | 6462053 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon56 | 6463204 | 6463243 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS56 | 6463204 | 6463243 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon57 | 6463372 | 6463425 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS57 | 6463372 | 6463425 |
| chr_2 | g5012 | g5012.t1 | exon | g5012.t1.exon58 | 6463491 | 6463528 |
| chr_2 | g5012 | g5012.t1 | cds | g5012.t1.CDS58 | 6463491 | 6463528 |
Sequences
>g5012.t1 Gene=g5012 Length=3018
ATGGGCTCAAGACAAGTGGTAGCCAATAAAATGGCAAATCCACAATCATGGTGGTACTTA
GCATTATTAATCTCATTTATGATTGTAAATACAAGTGCTCAAATGTGGAATGAAGTAGAG
AGCAGTGGTATAGGATTAACAGGAAGATCGAGGAATAGGCAGCCATTTAGAGAAAATGTA
CAAAGAGTGCCAGACTCTTATGATATTGTAGACACTGCCAGTGCACAAGTCAGAGGCCCA
CCTGCTAAAAATTGTACAGGCTCTGGTTGTTGTATACCAAAATGTTTTGCAGAAAAAGGA
AATAGAGGATTACCAGGTATGCAAGGATTTGCGGGTTCCGAAGGTCTACCTGGAATGAAA
GGACAAAAGGGGGAACCAGGTCCGACTGGCCCAATGGGTCCTAAAGGAGACAGAGGAAAA
CAGGGAATGCCTGGATTTCCAGGAATCCCAGGAATTAATGGACAAATGGGTCCTCCTGGA
ATGCCCGGACTTCCTGGACTTGATGGTTGTAATGGAACTGATGGATTACCTGGGCTTCCG
GGATTACAAGGAAATCCAGGCCCAAGAGGTTATCCTGGACCATCGGGTATTAAAGGAGAA
AAGGGTGAACCTGCAAATATAGACTATACAAATTATGAAAAAGGACAAAAGGGTGAACCA
GGATTTGACGGAAGAATCGGAAATCCCGGTTTGCCAGGCCAGCCAGGTGAAAGAGGTATT
CCTGGTGAACCTGGATACAATGGAAGAGACGGAGTTAAAGGAGATAAAGGTGATATGGGT
GAAAAGGGAGAATGCATAAAAGGTCCTCCTGGTGAAAAAGGAGAAAGTCCATTGTATTTA
GATGCACCTCCACATGAAGATCTAGTCGGACCAGCAGGCAGTAAAGGTGACAAAGGTGAT
TCAGGTCCAATGGGATTGCAAGGCAGAGATGGAACTCCAGGTGATAATGGAGCTCCAGGA
CCACGAGGCGATGTTGGAGAAAAAGGACTTCCGGGTCCACCAGGACAACGTGGACGTGAT
GGACCATTTGGACCACCAGGTCCACCTGGGCAAAAAGGTGATATTGGAAGTGAAGGCTTG
CATGGTTTAGATGGCCCACAAGGACAAAAGGGTGAACCAGGAAGAGACGGTCTTCCTGGA
CAACCTGGATTAATTGGACCTGCTGGACCTCCTGGTGGTGGAAAAGGCACGCCAGGACCA
CCAGGCCCTCCTGGTCCTCGTGGATTTAGGGGGTTACCCGGACCAAAAGGACTCGATGGC
TTACCCGGAGAAAGAGGACCAAAAGGAAATACAGGACAAAAAGGTGGCGCTGGACTTCCT
GGAAGACCTGGCCCAGAAGGTTTTCCTGGTGAAAAAGGACAGAAAGGAGAAAGTGGAAAA
CCAGGATTTCCAGGTATTCAAGGAGCTAGAGGACTTCCAGGTTTACCCGGTCCAGAAGGA
TTAAGAGGTGAACCAGGCGAATCTGGAATTGGAATTCAGGGCGAAAAAGGTGACCAGGGA
ATGCCTGGTTTCCCTGGATTACCAGGAAGAAAAGGAGAACGTGGTTTTAAAGGACAAGCT
GGTGCTCCTGGAGATTCTAGAGATGGAAGACCTGGTGCTGCGGGCCGACCAGGAGCTATG
GGACAAAAAGGTGAAGCCGGCAGACCTGGTTTAGATGGTTTGAAAGGTGAACGTGGTGAA
AAAGGAGAAATAGGAGGTCGTTGTTCAGATTGCAGGCCAGGATTGAAAGGAGACAAAGGA
GAAAGAGGCGTCGATGGATTGCCTGGTGCTCCTGGTCTAATGGGAATTCCAGGAGAAAAA
GGCTATCCAGGTTTAAGAGGTGAAGATGGAAATCCTGGACCACCAGGTCCAGCGGGTGCA
AAAGGTGCTGATGGCAGAGATGGGCCTCCCGGACCCGAAGGTCTTAGAGGAGAAGATGCA
ATAATTTCTTGGGATCAAATAAAAGTTGAGAAAGGAGAAAAAGGTATTCAAGGACCACCT
GGAAGAATAGGACCAAAAGGAAATCAAGGTTTAAGAGGATTTAGTGGACTTCCAGGTCTT
AAAGGAGAACAAGGTTTCCCTGGCGAACCTGGAAGACCAGGCTTGCCAGGCCTCGATGGA
ACTCCTGGAAAGCCGGGCCGCGATGGACTTCCTGGCCAAAAAGGAGCATCAATAAAAGGA
GAACCTGGATTTCCTGGCCTCGATGGACAAAAAGGTGAAAGAGGCGTTCCTGGACCAAAG
GGAGAACGAGGAGATACACCAAATTGTCCAAAACTTGATGTGCCAGCAGAACTTAGAGGA
ATGCCTGGTGAAAGAGGAGAACAAGGTTACACAGGTTTGGATGGTGCAAAGGGAGAGAAA
GGCAACAGAGGACCAAAAGGTGAAAAGGGAGAAGTCGGATTACAAGGTTTACAAGGATTG
CCTGGACCTTTTGGACCTCGCGGTTTAGCAGGTCCTAGAGGAGAAAAAGGTCTTCCAGGT
GCTGTTGGTTTCCCTGGAAATCCCGGAAAAGATGGACTAAGAGGCATTCCTGGTCTCCCA
GGTGAAAAGGGAGCAAAAGGAGAACAAGGTTTGAGTGTTGCAGGTCCTGCTGGTCCAAAA
GGAAATATCGGTTTTCAAGGAAGAAAAGGAGAACGCGGTGAAACAGGAGAAAGAGGTTTG
GAAGGTTTGCAGGGACTTCCAGGATTCCCGGGTGAAAAAGGAGACGAAGGAGCAAGTGGA
ATTCCAGGAGCGCCAGAAAAGTTATTTGATAGCTACTTTTTCATTAATTTTGTAGGTTTT
ACTGGACAGAAGGGAGAACCAGGTCCGAAGGGCCCTCAAGGCTTACAAGGCCCGACTGGC
AGACCAGGACTTGATGGAATTCCTGGTCAACCTGGAATGAAAGGTGAAAGTGGAAGCCCT
GGAATTGTTGGAATGCCCGGACCGAAAGGCGAAAGAGGTTTTCCAGGAAATGATGGACCG
AAAGGCTATCAAGGTCCAAAAGGCGCGCCAGGATTGAGAGGCATGCCCGGTCCTCAAGGT
AATAAAACAATAATTTAA
>g5012.t1 Gene=g5012 Length=1005
MGSRQVVANKMANPQSWWYLALLISFMIVNTSAQMWNEVESSGIGLTGRSRNRQPFRENV
QRVPDSYDIVDTASAQVRGPPAKNCTGSGCCIPKCFAEKGNRGLPGMQGFAGSEGLPGMK
GQKGEPGPTGPMGPKGDRGKQGMPGFPGIPGINGQMGPPGMPGLPGLDGCNGTDGLPGLP
GLQGNPGPRGYPGPSGIKGEKGEPANIDYTNYEKGQKGEPGFDGRIGNPGLPGQPGERGI
PGEPGYNGRDGVKGDKGDMGEKGECIKGPPGEKGESPLYLDAPPHEDLVGPAGSKGDKGD
SGPMGLQGRDGTPGDNGAPGPRGDVGEKGLPGPPGQRGRDGPFGPPGPPGQKGDIGSEGL
HGLDGPQGQKGEPGRDGLPGQPGLIGPAGPPGGGKGTPGPPGPPGPRGFRGLPGPKGLDG
LPGERGPKGNTGQKGGAGLPGRPGPEGFPGEKGQKGESGKPGFPGIQGARGLPGLPGPEG
LRGEPGESGIGIQGEKGDQGMPGFPGLPGRKGERGFKGQAGAPGDSRDGRPGAAGRPGAM
GQKGEAGRPGLDGLKGERGEKGEIGGRCSDCRPGLKGDKGERGVDGLPGAPGLMGIPGEK
GYPGLRGEDGNPGPPGPAGAKGADGRDGPPGPEGLRGEDAIISWDQIKVEKGEKGIQGPP
GRIGPKGNQGLRGFSGLPGLKGEQGFPGEPGRPGLPGLDGTPGKPGRDGLPGQKGASIKG
EPGFPGLDGQKGERGVPGPKGERGDTPNCPKLDVPAELRGMPGERGEQGYTGLDGAKGEK
GNRGPKGEKGEVGLQGLQGLPGPFGPRGLAGPRGEKGLPGAVGFPGNPGKDGLRGIPGLP
GEKGAKGEQGLSVAGPAGPKGNIGFQGRKGERGETGERGLEGLQGLPGFPGEKGDEGASG
IPGAPEKLFDSYFFINFVGFTGQKGEPGPKGPQGLQGPTGRPGLDGIPGQPGMKGESGSP
GIVGMPGPKGERGFPGNDGPKGYQGPKGAPGLRGMPGPQGNKTII
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 26 | g5012.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 260 | - |
| 27 | g5012.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 596 | - |
| 30 | g5012.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 583 | - |
| 25 | g5012.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 635 | - |
| 28 | g5012.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 786 | - |
| 29 | g5012.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 844 | 874 | - |
| 31 | g5012.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 963 | 1005 | - |
| 20 | g5012.t1 | PANTHER | PTHR24637 | COLLAGEN | 97 | 204 | 1.9E-157 |
| 16 | g5012.t1 | PANTHER | PTHR24637 | COLLAGEN | 192 | 342 | 1.9E-157 |
| 17 | g5012.t1 | PANTHER | PTHR24637 | COLLAGEN | 268 | 392 | 1.9E-157 |
| 15 | g5012.t1 | PANTHER | PTHR24637 | COLLAGEN | 362 | 525 | 1.9E-157 |
| 19 | g5012.t1 | PANTHER | PTHR24637 | COLLAGEN | 397 | 565 | 1.9E-157 |
| 21 | g5012.t1 | PANTHER | PTHR24637 | COLLAGEN | 530 | 715 | 1.9E-157 |
| 22 | g5012.t1 | PANTHER | PTHR24637 | COLLAGEN | 611 | 745 | 1.9E-157 |
| 23 | g5012.t1 | PANTHER | PTHR24637 | COLLAGEN | 720 | 904 | 1.9E-157 |
| 18 | g5012.t1 | PANTHER | PTHR24637 | COLLAGEN | 882 | 1001 | 1.9E-157 |
| 2 | g5012.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 99 | 155 | 1.6E-9 |
| 6 | g5012.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 148 | 205 | 3.6E-9 |
| 8 | g5012.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 215 | 275 | 5.3E-8 |
| 1 | g5012.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 290 | 346 | 6.0E-8 |
| 12 | g5012.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 335 | 392 | 6.9E-8 |
| 13 | g5012.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 435 | 489 | 1.9E-8 |
| 5 | g5012.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 583 | 638 | 9.3E-9 |
| 14 | g5012.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 652 | 706 | 2.3E-9 |
| 3 | g5012.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 691 | 745 | 1.2E-7 |
| 7 | g5012.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 760 | 808 | 2.5E-8 |
| 11 | g5012.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 799 | 850 | 7.5E-9 |
| 10 | g5012.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 855 | 905 | 1.2E-8 |
| 4 | g5012.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 919 | 962 | 9.4E-7 |
| 9 | g5012.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 949 | 1002 | 1.7E-8 |
| 33 | g5012.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 16 | - |
| 35 | g5012.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 17 | 36 | - |
| 34 | g5012.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 37 | 1005 | - |
| 32 | g5012.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 33 | - |
| 24 | g5012.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 17 | 36 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5012/g5012.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5012.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K06237 (collagen type IV alpha)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
