General information for g5051.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g5051 is located on chr_2: 6619177..6620880 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5051 | g5051.t2 | isoform | g5051.t2 | 6618900 | 6619799 |
| chr_2 | g5051 | g5051.t2 | exon | g5051.t2.exon1 | 6618900 | 6619077 |
| chr_2 | g5051 | g5051.t2 | TTS | g5051.t2 | 6618905 | 6618905 |
| chr_2 | g5051 | g5051.t2 | cds | g5051.t2.CDS1 | 6619068 | 6619077 |
| chr_2 | g5051 | g5051.t2 | exon | g5051.t2.exon2 | 6619181 | 6619799 |
| chr_2 | g5051 | g5051.t2 | cds | g5051.t2.CDS2 | 6619181 | 6619599 |
| chr_2 | g5051 | g5051.t2 | TSS | g5051.t2 | 6620128 | 6620128 |
Sequences
>g5051.t2 Gene=g5051 Length=797
TGGATGATAATGTAGCACGCAATAATTTAATAGCTGCAAATCGTGAAGGAATTTTCTCGA
CAACTGGTTATGTTTCACTTTATTTGGCGTCAATATATATTGGCACGCTATTGAAATCAG
ATGGACAAGAGCTGTTGAAAGTGCGAGAAGTTTTTCATAAAGCTGTAAAATTGGGACTGA
CTTCAGCTTTTTGCTGGAAAATGATTTATGTGTGTAATGGAATGTTTGGAGTGTCAAGAC
GAAGTGCAAATATGGGTTATAATTTCTGGGTCCTTGCAGTCGGAACATCTATGATGTTTT
TGTTTATGTTAATAGAAATGTTTATATATTATATAAATTTTAATCGACCACAATGGCAAC
AAGTGGAACCAAACACAAAAGCGCAATTGAATGAGCCAGAATTTCATGTTCCTTATGTTC
CGCTTATTTTACAAGCAATCAACTATAATGGACTTGCATTTTTCCTCATCGCCAATCTAT
TTACGGGAATTGTGAATGTTTGCTTTCAAACGATGCTTTTAAGCACATCAGCAAGCATTC
TCATCATCACTTATTATACATTCTTGCTAAATGTTATTATGGTATTTTTATTCGTTAACA
AGTTCAAACTGAAAATATGTGCTTTTTGATGCAACAGCACTCATTCAGAAGTCATAACGG
AACACTTTTTTTACACATTCAATCATTAACTCACTCTCTCTCTCGCATTGCGGAAGGCCG
ATGAAAAAGATGATAATGTTGAAATTATGGACAAATAAATTTATTTTTTATTTTTTTAAA
TGTAACAAAAATCATAT
>g5051.t2 Gene=g5051 Length=142
MIYVCNGMFGVSRRSANMGYNFWVLAVGTSMMFLFMLIEMFIYYINFNRPQWQQVEPNTK
AQLNEPEFHVPYVPLILQAINYNGLAFFLIANLFTGIVNVCFQTMLLSTSASILIITYYT
FLLNVIMVFLFVNKFKLKICAF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g5051.t2 | PANTHER | PTHR20661 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS W PROTEIN | 10 | 138 | 1.0E-20 |
| 1 | g5051.t2 | Pfam | PF06423 | GWT1 | 3 | 99 | 1.1E-20 |
| 8 | g5051.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 19 | - |
| 11 | g5051.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 45 | - |
| 6 | g5051.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 46 | 84 | - |
| 12 | g5051.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 85 | 105 | - |
| 9 | g5051.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 106 | 110 | - |
| 10 | g5051.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 111 | 132 | - |
| 7 | g5051.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 133 | 142 | - |
| 4 | g5051.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 23 | 45 | - |
| 3 | g5051.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 85 | 107 | - |
| 5 | g5051.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 111 | 133 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5051/g5051.t2; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5051.t2.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006506 | GPI anchor biosynthetic process | BP |
| GO:0016746 | acyltransferase activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed