Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative GPI-anchored wall transfer protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5051 g5051.t7 isoform g5051.t7 6618900 6620880
chr_2 g5051 g5051.t7 exon g5051.t7.exon1 6618900 6619090
chr_2 g5051 g5051.t7 TTS g5051.t7 6618905 6618905
chr_2 g5051 g5051.t7 cds g5051.t7.CDS1 6619090 6619090
chr_2 g5051 g5051.t7 exon g5051.t7.exon2 6619181 6620147
chr_2 g5051 g5051.t7 cds g5051.t7.CDS2 6619181 6620147
chr_2 g5051 g5051.t7 exon g5051.t7.exon3 6620338 6620439
chr_2 g5051 g5051.t7 cds g5051.t7.CDS3 6620338 6620439
chr_2 g5051 g5051.t7 exon g5051.t7.exon4 6620520 6620880
chr_2 g5051 g5051.t7 cds g5051.t7.CDS4 6620520 6620880
chr_2 g5051 g5051.t7 TSS g5051.t7 6621056 6621056

Sequences

>g5051.t7 Gene=g5051 Length=1621
ATGTTGCCATCAGAATACAAAATTTTTCATGAAAGTTTTATGAAAAACAATAATGGAACG
ACTGCAATAGATAGCTTTCTATACATTATTCCATCTAGTTTTGCTATATTTCATACGATT
ACATTGACATCAGTACTTAGACTTAACAGTAATAGCAACGTTCCAGCAAGATTTTTAGTC
GAGTTTTTAACAATTTGCCTGAGTTTAGTCCTCTACACAACAATATTTAGTGATGCAATT
AGTCACATTTGTATCACACTTATCCTTATCACAATCACTTCAATCATTCGGCAATTACAT
GGAAAGTGCCACCTCACACCTTTCGTTCAAATTCCCGCGATTCTTCCAGATTTTATAACA
GTTGGACGATCAATAATCAGTCTCATCACTGCCGTTTGCATTCTCGCTGTAGATTTTCAA
TGTTTTCCAAGAAAACTTGCAAAAACAGAAAAATTTGGCTTTGGACTGATGGATGTAGGA
GTAGGTCTATTCGTATTTTCGAATGGGATTGTTGTGAAGCATTCAGCAGCTGCATTTTCA
AAAAAGAAATTTCAAAAACTTCTTGTTTCATGTCTACCACTCTTTATTCTCGGCTTTTCA
AGGCTGGTCCTTACAAAAGAAATCAATTATCAAGAGCATGTCACTGAATATGGAGTACAT
TGGAATTTTTTCATCACACTTGCAGTGACAAAAATCTTTGGAACAGTATTGGAAGGTTTT
ATGAAAACAGCCGAACATATAAAGTATTCTGCACTAATGTTACTTATGTTTCACGAAACT
TGTTTACAATTGGGCTTATCAAATTATATAATGGATGATAATGTAGCACGCAATAATTTA
ATAGCTGCAAATCGTGAAGGAATTTTCTCGACAACTGGTTATGTTTCACTTTATTTGGCG
TCAATATATATTGGCACGCTATTGAAATCAGATGGACAAGAGCTGTTGAAAGTGCGAGAA
GTTTTTCATAAAGCTGTAAAATTGGGACTGACTTCAGCTTTTTGCTGGAAAATGATTTAT
GTGTGTAATGGAATGTTTGGAGTGTCAAGACGAAGTGCAAATATGGGTTATAATTTCTGG
GTCCTTGCAGTCGGAACATCTATGATGTTTTTGTTTATGTTAATAGAAATGTTTATATAT
TATATAAATTTTAATCGACCACAATGGCAACAAGTGGAACCAAACACAAAAGCGCAATTG
AATGAGCCAGAATTTCATGTTCCTTATGTTCCGCTTATTTTACAAGCAATCAACTATAAT
GGACTTGCATTTTTCCTCATCGCCAATCTATTTACGGGAATTGTGAATGTTTGCTTTCAA
ACGATGCTTTTAAGCACATCAGCAAGCATTCTCATCATCACTTATTATACATTCTTGCTA
AATGTTATTATGGTATTTTTATTCGTTAACAAGTTCAAACTGAAAATATGAAGATGATGA
TGATGCTTTTTGATGCAACAGCACTCATTCAGAAGTCATAACGGAACACTTTTTTTACAC
ATTCAATCATTAACTCACTCTCTCTCTCGCATTGCGGAAGGCCGATGAAAAAGATGATAA
TGTTGAAATTATGGACAAATAAATTTATTTTTTATTTTTTTAAATGTAACAAAAATCATA
T

>g5051.t7 Gene=g5051 Length=476
MLPSEYKIFHESFMKNNNGTTAIDSFLYIIPSSFAIFHTITLTSVLRLNSNSNVPARFLV
EFLTICLSLVLYTTIFSDAISHICITLILITITSIIRQLHGKCHLTPFVQIPAILPDFIT
VGRSIISLITAVCILAVDFQCFPRKLAKTEKFGFGLMDVGVGLFVFSNGIVVKHSAAAFS
KKKFQKLLVSCLPLFILGFSRLVLTKEINYQEHVTEYGVHWNFFITLAVTKIFGTVLEGF
MKTAEHIKYSALMLLMFHETCLQLGLSNYIMDDNVARNNLIAANREGIFSTTGYVSLYLA
SIYIGTLLKSDGQELLKVREVFHKAVKLGLTSAFCWKMIYVCNGMFGVSRRSANMGYNFW
VLAVGTSMMFLFMLIEMFIYYINFNRPQWQQVEPNTKAQLNEPEFHVPYVPLILQAINYN
GLAFFLIANLFTGIVNVCFQTMLLSTSASILIITYYTFLLNVIMVFLFVNKFKLKI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g5051.t7 PANTHER PTHR20661 PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS W PROTEIN 10 475 1.6E-107
43 g5051.t7 PIRSF PIRSF017321 PIG-W 3 476 9.5E-124
1 g5051.t7 Pfam PF06423 GWT1 283 436 1.4E-33
29 g5051.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 25 -
42 g5051.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 26 46 -
16 g5051.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 47 57 -
35 g5051.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 58 74 -
24 g5051.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 75 79 -
31 g5051.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 80 99 -
18 g5051.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 100 119 -
34 g5051.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 120 140 -
26 g5051.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 141 151 -
37 g5051.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 152 172 -
17 g5051.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 173 183 -
38 g5051.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 184 204 -
28 g5051.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 205 218 -
40 g5051.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 219 237 -
21 g5051.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 238 248 -
32 g5051.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 249 271 -
27 g5051.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 272 290 -
30 g5051.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 291 308 -
22 g5051.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 309 327 -
39 g5051.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 328 347 -
23 g5051.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 348 358 -
36 g5051.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 359 382 -
20 g5051.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 383 421 -
41 g5051.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 422 442 -
25 g5051.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 443 447 -
33 g5051.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 448 469 -
19 g5051.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 470 476 -
13 g5051.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 42 -
14 g5051.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 54 76 -
5 g5051.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 80 99 -
12 g5051.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 120 142 -
9 g5051.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 152 174 -
4 g5051.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 187 204 -
15 g5051.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 219 237 -
8 g5051.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 249 271 -
7 g5051.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 286 308 -
3 g5051.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 328 350 -
11 g5051.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 360 382 -
6 g5051.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 422 444 -
10 g5051.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 448 470 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5051/g5051.t7; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5051.t7.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006506 GPI anchor biosynthetic process BP
GO:0016746 acyltransferase activity MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values