Gene loci information

Transcript annotation

  • This transcript has been annotated as Dynein heavy chain 7, axonemal.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5058 g5058.t1 isoform g5058.t1 6648658 6662178
chr_2 g5058 g5058.t1 exon g5058.t1.exon1 6648658 6648807
chr_2 g5058 g5058.t1 cds g5058.t1.CDS1 6648658 6648807
chr_2 g5058 g5058.t1 exon g5058.t1.exon2 6648863 6651532
chr_2 g5058 g5058.t1 cds g5058.t1.CDS2 6648863 6651532
chr_2 g5058 g5058.t1 exon g5058.t1.exon3 6651945 6652860
chr_2 g5058 g5058.t1 cds g5058.t1.CDS3 6651945 6652860
chr_2 g5058 g5058.t1 exon g5058.t1.exon4 6652930 6654185
chr_2 g5058 g5058.t1 cds g5058.t1.CDS4 6652930 6654185
chr_2 g5058 g5058.t1 exon g5058.t1.exon5 6654660 6655052
chr_2 g5058 g5058.t1 cds g5058.t1.CDS5 6654660 6655052
chr_2 g5058 g5058.t1 exon g5058.t1.exon6 6655310 6658259
chr_2 g5058 g5058.t1 cds g5058.t1.CDS6 6655310 6658259
chr_2 g5058 g5058.t1 exon g5058.t1.exon7 6658430 6660502
chr_2 g5058 g5058.t1 cds g5058.t1.CDS7 6658430 6660502
chr_2 g5058 g5058.t1 exon g5058.t1.exon8 6660668 6661727
chr_2 g5058 g5058.t1 cds g5058.t1.CDS8 6660668 6661727
chr_2 g5058 g5058.t1 exon g5058.t1.exon9 6661786 6661924
chr_2 g5058 g5058.t1 cds g5058.t1.CDS9 6661786 6661924
chr_2 g5058 g5058.t1 exon g5058.t1.exon10 6661984 6662178
chr_2 g5058 g5058.t1 cds g5058.t1.CDS10 6661984 6662178
chr_2 g5058 g5058.t1 TSS g5058.t1 NA NA
chr_2 g5058 g5058.t1 TTS g5058.t1 NA NA

Sequences

>g5058.t1 Gene=g5058 Length=11802
ATGAGTAAATATTTGAAAAATTTGCATAAACCTTGTGATAAAATTGATAAATATGATAAT
GAACCTTATATGAAAAATCCTCTTTTGCGGCTTAAACTGCCGGAAATCAAAAGTTTTCGA
AGATTGTCAAGAATTGAGAAAGAACCACGATTCAAACTTCCACCAAAACATGTCGAAGAA
GAAGAAGATGAACCAATGATGGATGTCCATCCTCATGTGCATATCAAAAAACTTCGTTTC
TATGCACGTAATACACCAATTCCAAAAATGCAAAAGTCTACAGAACAGAAAATTATCAGT
TATTCATCAAAAAGACTGAGAGACAAATATCCAATGATTGTGAAAGACTATATGACTGAT
GTTCATGAAGAATATGATCGATTAATGAAGGCATTTAGCATGAGTAAATTATTAAAACCT
TTACCTGGCGATTTCATTCCAGAACGTGACACATTTCAATTTAAAAGACTTGGAAAAACT
GAAAATTACAAAAATTATCTCAAAAATCGTGACAAAATTAAGAAAAATCTTATGCTGATT
TATCCTTTTGTTCGTTGCATTCATTATTACTCAAATGTCGATTTTCCAGTGACACTTAAT
GATTTTTCAAGATATCGTAAAATGGGACAATTGGGCATTCATGATATTCGTGATTTTACA
AAAAAAGATTTAGCTGAAAATTCTGCATTTATTAAAAAATCTTGGTATCCGCGAATAATT
CAAATTATGGCAAAACATTATAAAAAGCAAAATAATTATAAATTATCAAAGAAGCAATGG
CAAAAAGCATGGAAATGTTCAACAGGTCTTATCATTCGCGAGATTAATGGCCTTAAAATG
CGAACCATTGAGCACCTCAATGCGGTCATTCAGAATCGTCATCAAATTCCATTTCTCAAA
ATTATCGCAATCTGCGAGCAACATATTGATTTGTGTCCAACGATTGAGGAAATTTTCGAA
ATGTATCATGGCTTTATCGACATCATTAATGAAATCGGCAACAATCTCGAGCCAATTGAA
ACTCTTATCGATAGAGAACGCTTTGAGTCTCCATTCATGAACATCAAAGTTGAATTGAAT
GATGTGATTTTGAAATCTTCACATGATACCCTACAAGAGTCGCTAACACTTTCATATTCA
TCAATTGAAGCTTATTTGAGTGCCTTTCAAATGGAATTTTATGGATTAAGTTCAAATCAA
GCAATGAATGAATTAAATGAATATTTGAAAAACGAACATGAAATTGATGATTATTTTGAT
GAAATTGTTAAATATCAAGCTTACATTGATAAATTGCGATTGCTTGTACAAAGAGAATAT
TTCAATGAAGCCATTATTTCACAATCTGATGCGATTTGTTCACTTAGACGAATGGGCGAT
AGATTGATTAAAAAGATTACTGATAGAATAATATCACAACATAAGACTGACATTTTAAAT
ATTTGCAATCAATATGAAGAAATTAAAGCTCGTGCATTGGAAATTCCAAAATCAACGGAA
GAACTCTTTGAAACTGGCGAATATTTGTTGCAAGTAAAGAAAGTTGTAATCGATCAATTG
GCTGAAAGAATTCGTAATTCATTAAAATTAACTGGTGACATTATTGAATTGACAGAGATG
GATGCAGGTCATAAAGCTTTGCTACTTGATGCAGTCAATTGGTATCACAATTCATCGCAA
ATTTTTGAACTTGGTGGAACTAATTTTGAAGCGATGAAATATCAATTTGAGGAAAAACTT
CAAGTTGTCTCGAAGCAAATGCAAGAAAGATTGAGAGAACTTGCACCAAATGTGACAATT
ATAAATGACATGACAGAACCTGAGAAATTTAAAGAATATCAGAGAATTTTACAGAAATTT
ATTGATGAATTGGTTAATTTTGATGAAAGTGTGAAATGGTTGAATAAGGAAGAATCGCTT
TTTAAATTTCCCAAGACAAATTCAACATTATTGGAAGAAATGAAAGGTTTTGTAATTCCG
TTTGCTCAACTTATACAAATTTGCATTAATTGGTATAAAAAATATGAAGTTTGGATCGAT
GATTGTTTTGAATATCTCGAGCCAGAAAAAGTTCAAAGTTCAACTGAAGAATTTTTAAGA
AATTTTCAAAAATCTCAAAAATTCTTTCGCAATAAAATCAAGTCTGACACTGAAAATCCT
GAATGTCGATTTAAAGGACAACTTGAAGATCCTGATGTTGAAAAACTTCCAGCACCTTTA
AAAATTTGTGCTCGAATGATACAAACGATAAAAGATTTTCGTCATGGTGTTCATGTTGTT
ACAATTATGTGCAATCCAGCATTAAGAACCCGACATTGGGAAGAAATGTCACAAGTTGCT
GGTATGGATCTGCAACCCGATGCTGGAACGACATTGAGAAAAATTATTAATCTCAATTTA
AATTGCTTGGATGAATGTGAAATTATCTCGATTGGTGCATGCAAAGAATTGCAATTGCAG
AAAAATCTTGCAGCAATGATAAGTGAATGGAATGAAGTAACTTTTACATTAGATAAGTAT
AAGAATACTGGCATAATAATTCTTACAAGTGTCGAAGATATTATGGCATTACTAGATGAT
CACATTTTGAAAACATTGTCGATGCGAGGGAGTGCATTTGTTAAGCCAAGTGAAGCTGAA
GTTAAAGATTGGTATAACAAACTCATTCGTGTGCAAACAACAATTGAACAATGGACAAAA
GTACAGCAAAATTGGCTTTATCTATTGCCTATCTTTTCTTCTAAAGATATTGTAGCACAA
ATGCCTGAAGAAGGAAGATATTTTGCTCAAGTTGATCAAATTTACAAGCGCAATATGATG
GCAGTAGAAAAGGAGCCAAATGTAATGATGACAGCATCACAAGTCGCTCTACTAGAAACA
ATGTTGAATGCGAATGAGATGATGGAGAAAGTTATTAATGGTGTTAATAACTATTTAGAA
CAAAAGCGTCTTTATTTTCCTCGCTTCTTCTTTCTCTCTAATGACGAAATGCTTGAAATT
CTATCAGAAACAAAAGATCCATTACGTGTTCAACCACATCTCAATAAATGTTTTGAAGGC
ATTTATCGACTCAAATTCAATGATGAACTTGAGGCACTTGCAATGATTAGTGTTGAACGT
GAAGTAGTGAAATTTAATGATAAAATTTCAACAGTAGATGCTCGAGGTAGTGTAGAAAAA
TGGTTGTTACAAACTGAACAACAAATGTTGCAATCGATAAAAAGCGAAACAGTCAAGAGT
TGTAAAAATTATCAAGAAATAAATCGAACTGAATGGATGATTCGATGGCCAGGAATGATT
GTTTTGAGTGTATCACAAATTTATTGGTCAGCTGAGATTGAACAAAAATTTGGACAACCA
AATGGCATACGAGAATATCATGAATCACTTCAACAACAATTGAGAGAAACGGTCACACTC
ATAAGAAGCAAGGAAATTAGCAATTTGGCCCGTATCACAATTCGTGCACTCATCGTGATT
GATGTGCATGCAAAGGATGTTGTTGAGGAAATGTTAAAGAAAAATACCGAATCGGAAAAT
GATTTTCAATGGCTATCACAGTTGAGATATTACATGATTGATGACCTCGTATGGGTAAAA
ATCATCAATGCTTGTGTTCCATATGCATACGAATATTTGGGCAATTCAGATCGCCTTGTT
ATCACACCCTTGACTGATCGATGCTATCGTACATTAATGGCAGCATATCAACTTCATTTG
AATGGTGCTCCTGAAGGTCCAGCTGGTACAGGAAAGACAGAGACAACAAAAGATCTCGCA
AAAGCCTTGGCTGTTCAATGCAAAGTTTTCAATTGTTCGGAAGGTCTCGATTATAAATCA
ATGGGAAAATTCTTTAAAGGTTTAGCAGCATCTGGTGCATGGGCATGTTTTGATGAATTT
AATCGAATTGAACTTGAAGTTTTGTCAGTCATTGCACAACAAATTTTATCGATTATTTTA
GCAATAAGAAATAATGCCGAGAAATTTATTTTTGAAGAAACTGAATTGAAACTTAATCCA
GCATGTTATGTATGCATTACAATGAATCCAGGCTATGCAGGAAGAAGTGAACTTCCTGAT
AATCTTAAAGTTCTTTTCCGATCAGTTGCAATGATGGTACCAGATTATTCAATGATTGGC
GAAATTTCACTCTATAGTTATGGCTTTGTTAATGCAAGAGTTTTATCAGTTAAAATTGTC
ACAACTTATCGTTTATGTTCAGAGCAATTGAGTTCACAAAATCATTATGACTACGGTATG
AGAGCGGTAAAAACAGTATTGCAGGCGTGCGGCAATTTAAAGAAACAATTTCCCGATGAA
CGTGAAGAAATTCTTCTATTGCGAAGTCTTCTCGATGTAAATTTACCAAAATTTCTCTCA
TACGATATTCCGCTCTTTCATGGCATAATTTCCGATTTATTTCCCGATGTGAATTTACCG
GATGCTGATTATCAACATTTAACTGAAGTTTTCAATGTTGTTTGTGAAGAATTTAATTTA
CAACCAAAGAAAGAATTTTTGACAAAAGTCATTCAAACATTTGAAATGATGATTGTACGT
CATGGCTTTATGCTTGTTGGTGAGCCATATGCTGGAAAAACAAGTACATTGCGTGTGCTT
GCAGAGTGCTTAACGAGATTACATGCATTATATCCCGATGAGAGTAGTTATTATCAAAAA
GTCCAATGGGATACAATCAATCCTAAATCAATAACTATGGCACAATTGTATGGCGCATTT
GATCCAATTTCATATGAATGGAGTGATGGCATAGCGGCAACAATGTTTCGTAACTTTGTC
AATGATACATCAAATGATCGAAAATGGATTGTCTTTGATGGACCGGTCGATGCTGTATGG
ATTGAAAACATGAATACTGTACTAGATGATAATCGAAAAATGTGCCTTACATCCGGCGAA
GTTATAACAATGACAAATGAAATGTCGATGATTTTTGAAGTCATGGATTTATCACAAGCT
TCACCAGCAACTGTTTCACGTTGTGGAATGATTTATATGGAGGCAGTTTCAATAGGATGG
GAAGCAATGGCACAATCATGGTTAAATAAATGCAATCCAATATGGTCGAATGATGAATAT
AGACCGGTTATTATGGCCATATTAAGTTGGATAATTCCCGATTGTTTGTCATTCATTCGT
AAAAACTGTCAACAATTTCTCATGCCTGGCGATATAAATGTTGTCATGACGACATTATCG
ATTTTTGAGATGCTCCTGAATGATGCGATTGATGAGAATCCTGATGAATATGCAAAATTT
ATAACATCCTGGTTTCAGGCTGCTATCTCATATGCAGTCGTATGGGGCTTAAGTGGCATC
ATGAATACAGAATCACGAGTTAAATTTGATGAATTTTATCGTGAGATTTGGAATTCTCAA
ATACCAGCTGAGATAGGAAGAGTAGAAGTTTCAGTTCCACTTGATGGCTACATAATTGAT
TATGTTTACATTTTCAAGCAAAAAGGCGCCTGGAAATATTGGCCAGATTTAGTTAGAAAT
ATGAAAATTGAGACATTTGGTGTGTCAACTTTACAAGTTCCAACAATTGATACTGCACGT
TATTCATATCTTTTTAATTTGCATTTTAAATATCAACGACCTTTCCTCATTGTTGGTCCA
ACTGGAACAGCAAAGACATTTTATATACAGAACAACATGATGAAATTGCCAGAGGAAAAA
TACGCTCCACTTTTCATAACATTCACTACACAAATTACAGCAAATCAAACGCAAGAGTTG
ATTTTATCGAAGCTTGTAAAAAATCGTAAGGGAGTTTATGGTTCGCCTGTGGGAAAGAAA
TCGATACTATTTATTGATGATATGAACATGCCAGCCAAGGACGTTTATGGTGCACAAGCT
CCAATTGAATTGATACGTCAGTATTTCGATAAACGTTACTGGTATGATTTAACTGATACG
ACAAAAATCCACATCAATGACATGATGATTATTGCTGCATGCGGTCTTGTTGGTGGCTCA
CGACAAGATGTATATGCAAGATTTCTATGTCACTTTAATATCTTTGCCATCAACCTCTTT
TCGGATGAGACAAATTTCAAAATTTTCCAATCACTTTTGCTCGACATTTACAAGCGTGCT
GGACATGCGACTGATGTAATTCAGAGTTGCACGAATATTATTAATGCGACCATTGATGTC
TATAATTTTGCCATAAACGAAATGCTGCCAACGCCATCAAATTCGCATTATGTGTTCAAT
TTACGTGACATTTCACGTGTTGTCAATGGTTGTTCTTTACTAAGAAAAGAATCAACAGAT
GGAAAACGAACGTTCGCCAAGATTTGGTGTCATGAAACAATGCGCGTTTTTTTTGATCGC
CTTACAAACAATGATGACCGAAATAAAGCTTTTGTGAAGCTTGAAAATTGCATAAAAGTT
CATTTTAAAGAGAAAATGAAAGAACTTTTTGATGACTTAGTTGATGAAAATGGTGATTTA
AATTATGAACGAATGAATGGTTTGCTATTTGGAAGTTATTTTGATTTGGATACTGAAATT
GAAGATAGAAAATATGAAATTATAGCGACAACAGCTGCACTTAAAAATCTCGCTTATCAA
TGTCTTGAAGAATACAATGCAACTCATAATACCAAAATGGATGTCGTTTTATTCGAGTAT
GCACTACAACATTTGAATAAAATTTGTCGAATTATTAGCATGCCATGTGGTTCAGCATTA
TTAGTTGGTATGGGCGGAAGTGGTCGACAATCAATGACACGTTTAGCTGCAGCAATTTTA
AATCAAACACATTTTCAACCTGAAATTACTAAAAATTATGGCCTTAATGAATTTCGTGAT
GATTTAAAAACAATGCTAAAAGAAGCTGGTGGTAATGGTCGAGATAGTGTGTTCCTATTT
AGTGATAATCAAATAAAAATGGAAGAATTTCTTCAAGATATCGAATGTCTTTTGAATCTC
GGTGAAGTGCCAAATATTTTTCAAATTGATGAGAAACAGGAAGTACTTGAAATGGTTCGA
TTAGCAGCACAAGGTGGAAATAGAAATTTAGATATTCCACCATTGCAAGTTTTTCAATTT
TTTGTCAACCGTTGTAAGCAGAAACTTCATTTGATTCTTTGCTTTAGTCCGATTGGATCA
GGCTTTAGAAATCGTTTGAGACTTTATCCATCGCTTGTTAATTGCTGTACAGTCGATTGG
TATGATCCATGGCCAGAAAATGCACTTGAAATGGTTGCTGAAAAATATGTGAAAGATGTA
AACATTCCAGATGATATTAAAGACAATGTTGTGAATATTTTGAAACAATTTCATATTAAT
GCACTTGAAATGTCAGATGAATATCAAAGAGAAACTGGGCGTGTTACATATTTTACATCA
TCAAGTTATCTTGAATTAATCAATTCATTTGCAATTCTTATTGAAAGAAAACAAAAAGAA
TTGATTGATAATAAAAATCGCTATTTAGTTGGTTTAGATCGTTTAAAAGATGCAGCTGAT
ACTGTTGCAAGAATGCAAATTGATTTGGAAGCAAAACAACCGCAACTTAAAATTTTAGCT
GAAGAATCTCGTCAAATGGCAGAACAAATTGAAAAGAAAACTATTGAAGCTGAATTGGCA
CAAGAGCAAGTGAAACGTGATGAAGAAATTGCAAATAAGCAGGCAGCAGAATCATTGGCA
TTAAATGCAGAATGTGAAAAAGATTTGGCTAGTGCAATTCCAATTCTTGAAGATGCAATT
CAGTCGCTTAATACACTCAAGCCATCTGACATAACGCTCGTTAAATCAATGAAAAATCCA
CCAGATACAGTCAAACTTGTGATGGCAGCTGTCTGCGTTATGAAATCCATTCCACCTGAT
AAAGTTCCTGATGCCTCGGGCAAAAAAATTGTCGATTTTTGGGGACCATCAAAACGCTTA
CTTGGTGATATGCAGTTCCTACAGTCATTGAAAGAATACGACAAAGACAGCATTAAACCT
GAAATTATGGCAAAAATTCGAAAGGATTTTATTCCACATAAAGACTTTAAGCCTGAAGTT
GTGGCTAAAGCATCGAGTGCAGCTGAAGGTTTATGCAAGTGGATTATTGCTCTAGATCTT
TATGATGCAGTAGCGAAAATTGTCGCACCGAAAAAAGCGAGCTTGGAAGAAGCAAAGAAC
AAGTATGAAGAGACCATGAAATTGCTGAATGAAAAACGTGAACTTTGTATACAATTAGAT
GATCGTGTCCTTAAACTTAATCGAGATTTAGAAGCTGCATTGCTGAAAAAACAGAAAGTC
GAAGATGAAGTTGAAATTTGTCGTCAGAAACTTGAAAGAGCTGAAACTTTATTGGGAAGT
CTTGGTGGTGAACGTGACAGATGGATAAGTGCAGCAGGAGAACTTCAATTAATTTATGAT
TGCCTTCCAGGTGATATTTTAATATCATGTGGATTAATTGCATATCTTTCACCATTAACA
TTTGATTATCGGCTTAAATATGGCAACATATGGCATAAATTATGCAGTGAATTAAATATA
CCACAATCACAAGCATATAATTTCATAATAATATTGGGCTCAGAAGAAAAAACACAAAAT
TGGAACATTGCCTTGCTACCTCGTGACACATTTTCAATTGAGAATGCGATAATAATGGAC
AATTCGACTCGCTATTCATTGTTTATTGATCCACAAAATCAGGCAAATAAATGGATTAAA
GAGATGGAGCGTAATAATGATATTGTCGTCATTAAATTCACCCAACATGATTACATGAAA
CAGATTGAGACATGTTTAGAACAGGGCCGTCCTGTGTTGATTGAAAGCATCATACAAGAC
TTAGAAGCTCCCCTCGATCCAATTCTAACACGACAGACTTTCAGGCAAGGCACTGCCGAG
TTTATTAATTTGGGTGATAATATGCTGCAGGTTTCACCAAATTTCCGCTTGTACATGACA
ACATCCCTTCGTAATCCTCATTTTTTACCCGAAGTTTTTAATAAAGTGACGGTCATTAAT
TTTGCTCTGACACTTCAAGGCTTAGAAGATCAATTGCTTGGAATTGTTGTTGCAAAAGAA
CGTCCTGATTTACAAGAATTAAGACAAAATCTTATTAAAGAAAAAGCTCATAATCAGCGA
GTTTTGCGTGAAATTGAAGATGGAATTTTAAAAACACTTTCTGAATCGGCTGGTGACATT
CTTGAAGATGAAACGGCCATACAAATGTTAGACGATTCAAAAAATCTCGCTGCTGATATA
AAACGAAAGCAAGAGGAGTCAATCGTGACAGAACAAAAGTTGGAGTCATTTCGCGAGAGT
TATAAACAAGTGGCAACACATGCTGCAACACTCTATTATTCCATCACTGACTTGCCAAAT
TTAGATCCAATGTATCAGTTCTCGCTTAGTTGGTACGTGAGTTTGTATATTTTTAGTATT
GAAAACGCGAGCAAGTCAAAGCATATTGTGAAAAGACTGAAATTTCTCATTGATGCCATT
ACAAATAACTTGTATAACAATGTATGCCGTTCACTATTTGAGAAAGATAAACTTTTATTT
GCTTTCATATTGACAACTAAAATTATGATTTCAAATAATCAAATGAGAGCGAAAGATTTG
GAATTTTTAGTTTGTAAAAAGCAAAGTTCTATCACTGAAACTGCTATTGTAGTAAATCCC
GATCCCAAATGGATAACTGACAAAGTTTGGTCACAGCTTGTGCAACTAAAGGAAGTCAAT
GTTATTTTCAGAGAATTTATTGATCAATTTCATGAACATTTAAGTGAATGGAAGGAAATT
TATGACAACTTGAAGCCAGAAGAATTGTCAATGCCTGGCATTTGGGAATTGAAATTGACT
GCATTCGAAAAGTTGCTTATAATCAACGCTTTACGTTCTGATCGTTTTATTGCTGCTGTT
GCGGTATTTATAAAAAGACAAATGGGCGAAACTTTCATTTCACCACCACCATTTGACATC
AGTAAATCATTTGAGGATTCTAATTGTCTCACGCCGCTCATTTTTATACTCTCACCCGGT
GTTGACCCAATGCAATCTATTCTATCATTTGCTGAAAAGCTTAAATTTGATGAAACATTT
CAGTCAGTTTCATTGGGACAGGGACAAGGCGAGAAAGCAACTGCTCTAATACAGCATGCA
CAAGAATTTGGTGGTTGGGTATGTTTGCAAAATTGTCATCTCGCTGACTCATGGATGCCC
ACACTTGAATTCTTGTGGGAAAGAATGGACATGTTTAATACTGACTCAACATTTCGTTTG
TGGTTAACGTCATATCCATCAAAATGTTTTCCAACCACAATCCTACAGAACGGCATTAAA
ATCACAAATGAGCCACCAACAGGTCTACAAAAGAATTTATTGCGGTCATACAATTCTGAA
CCAATGAATGATCCTGTTTTCTATGCTGGTTGTCCTGATAAAGATAGAGCATTCACAAAA
CTCCTTTATGGAGTTTGCTTTTTTCATGCTGTTGTACAAGAGCGAAGGAAATTTGGAGCT
CTCGGTTGGAATATTCATTATGGCTTCAATGAATCGGATTTTCAGATCTCTGTGCAGCAA
TTGCAAATGTTCCTTAATCAGTATAAAGAAATTCAATATGATGCAATTGCATATTTGACG
GGTGAATGCAATTATGGAGGACGTGTCACAGATGCATGGGATAGAAGAACAATTCTAGCA
CTCTTAAAAGATTTCATTAATGAAAATGTCGTACTCGATTCAGTATATAAGTTTTCAATA
GTCGATAATGCTTACATCGTGCCTCGTCGTACTGAGCATCGAGAAGTCGTCAAACATATC
AATGAGATAATACCAAATGATCCAAGCCCGGAAATATTTGGCCTTCATACAAATGCTGGA
ATTATACGTGATTTGAATGCGTCCGAAATGTTTCTCGATGCCATGAATTCGACACTAACA
CAAGCAGCAACACAAATGGCATCAAAGGAGAGTGAAAAGCTCATTATGAGCATGTTGACT
GACATAACAAGGCAGCTGCCGCTAAATTTCAACATTGAAGCAGCATATGAGAAATTTCCA
ATTGATTATAACGAGTCAATGAACACAGTACTTGTGCAAGAAATGGAAAGATTTAATAAA
TTGCTCGCTCAAATTCGTAAAGATTGTTCAGATCTTGCTGATGCGATTGTTGGCAAAATT
GTCATGACATCGCAGTTAGAAGAAATTATTGTGTCATTGACCATGAAAAAAATTCCTGAA
AATTGGTTAAAAAAATCTTATCCAAGTCTAAAGAATGTTGGCTCATACATTCGAGATTTT
GTTGAGCGTTTGAAATTCTTGCAAGAATGGTACGATGTTGGTAAGCCAAGTTGCTTCTGG
CTGTCGGGTTTCTTCTTTACGCAAGCATTTCTTACTGGTGCGATGCAAAACTATGCGAGA
AAATACAAAATTCCAATTGATACTTTGACATTTGATTTCAACACTTTGGATGTGATTGAC
GGAAAATTAATAACTGAGGCACCAATTGATGGTGTTAACATTCATGGACTCTTTATCGAA
GGTGCTCGTTGGTGCTTTAATGAAAAATCTGTGGTCGAACAAATTCCAAAAGTTTTAGTT
GATGAATTTCCATGCATTCATTTTATTCCAAAACTTTACAAAGACTTGATTGAAAAATCT
CAATACAAATCACCGCTATATAAGACTGCTGAACGCAAGGGAACGTTGTCAACTACAGGA
CATTCAACGAATTTTGTTATTGCTATTCTTCTCAATACAAATCTCAATCCAGAGCATTGG
ATAAAGCGTGGCGTTGCACTTTTGTGCCAGAAAAACGATTGA

>g5058.t1 Gene=g5058 Length=3933
MSKYLKNLHKPCDKIDKYDNEPYMKNPLLRLKLPEIKSFRRLSRIEKEPRFKLPPKHVEE
EEDEPMMDVHPHVHIKKLRFYARNTPIPKMQKSTEQKIISYSSKRLRDKYPMIVKDYMTD
VHEEYDRLMKAFSMSKLLKPLPGDFIPERDTFQFKRLGKTENYKNYLKNRDKIKKNLMLI
YPFVRCIHYYSNVDFPVTLNDFSRYRKMGQLGIHDIRDFTKKDLAENSAFIKKSWYPRII
QIMAKHYKKQNNYKLSKKQWQKAWKCSTGLIIREINGLKMRTIEHLNAVIQNRHQIPFLK
IIAICEQHIDLCPTIEEIFEMYHGFIDIINEIGNNLEPIETLIDRERFESPFMNIKVELN
DVILKSSHDTLQESLTLSYSSIEAYLSAFQMEFYGLSSNQAMNELNEYLKNEHEIDDYFD
EIVKYQAYIDKLRLLVQREYFNEAIISQSDAICSLRRMGDRLIKKITDRIISQHKTDILN
ICNQYEEIKARALEIPKSTEELFETGEYLLQVKKVVIDQLAERIRNSLKLTGDIIELTEM
DAGHKALLLDAVNWYHNSSQIFELGGTNFEAMKYQFEEKLQVVSKQMQERLRELAPNVTI
INDMTEPEKFKEYQRILQKFIDELVNFDESVKWLNKEESLFKFPKTNSTLLEEMKGFVIP
FAQLIQICINWYKKYEVWIDDCFEYLEPEKVQSSTEEFLRNFQKSQKFFRNKIKSDTENP
ECRFKGQLEDPDVEKLPAPLKICARMIQTIKDFRHGVHVVTIMCNPALRTRHWEEMSQVA
GMDLQPDAGTTLRKIINLNLNCLDECEIISIGACKELQLQKNLAAMISEWNEVTFTLDKY
KNTGIIILTSVEDIMALLDDHILKTLSMRGSAFVKPSEAEVKDWYNKLIRVQTTIEQWTK
VQQNWLYLLPIFSSKDIVAQMPEEGRYFAQVDQIYKRNMMAVEKEPNVMMTASQVALLET
MLNANEMMEKVINGVNNYLEQKRLYFPRFFFLSNDEMLEILSETKDPLRVQPHLNKCFEG
IYRLKFNDELEALAMISVEREVVKFNDKISTVDARGSVEKWLLQTEQQMLQSIKSETVKS
CKNYQEINRTEWMIRWPGMIVLSVSQIYWSAEIEQKFGQPNGIREYHESLQQQLRETVTL
IRSKEISNLARITIRALIVIDVHAKDVVEEMLKKNTESENDFQWLSQLRYYMIDDLVWVK
IINACVPYAYEYLGNSDRLVITPLTDRCYRTLMAAYQLHLNGAPEGPAGTGKTETTKDLA
KALAVQCKVFNCSEGLDYKSMGKFFKGLAASGAWACFDEFNRIELEVLSVIAQQILSIIL
AIRNNAEKFIFEETELKLNPACYVCITMNPGYAGRSELPDNLKVLFRSVAMMVPDYSMIG
EISLYSYGFVNARVLSVKIVTTYRLCSEQLSSQNHYDYGMRAVKTVLQACGNLKKQFPDE
REEILLLRSLLDVNLPKFLSYDIPLFHGIISDLFPDVNLPDADYQHLTEVFNVVCEEFNL
QPKKEFLTKVIQTFEMMIVRHGFMLVGEPYAGKTSTLRVLAECLTRLHALYPDESSYYQK
VQWDTINPKSITMAQLYGAFDPISYEWSDGIAATMFRNFVNDTSNDRKWIVFDGPVDAVW
IENMNTVLDDNRKMCLTSGEVITMTNEMSMIFEVMDLSQASPATVSRCGMIYMEAVSIGW
EAMAQSWLNKCNPIWSNDEYRPVIMAILSWIIPDCLSFIRKNCQQFLMPGDINVVMTTLS
IFEMLLNDAIDENPDEYAKFITSWFQAAISYAVVWGLSGIMNTESRVKFDEFYREIWNSQ
IPAEIGRVEVSVPLDGYIIDYVYIFKQKGAWKYWPDLVRNMKIETFGVSTLQVPTIDTAR
YSYLFNLHFKYQRPFLIVGPTGTAKTFYIQNNMMKLPEEKYAPLFITFTTQITANQTQEL
ILSKLVKNRKGVYGSPVGKKSILFIDDMNMPAKDVYGAQAPIELIRQYFDKRYWYDLTDT
TKIHINDMMIIAACGLVGGSRQDVYARFLCHFNIFAINLFSDETNFKIFQSLLLDIYKRA
GHATDVIQSCTNIINATIDVYNFAINEMLPTPSNSHYVFNLRDISRVVNGCSLLRKESTD
GKRTFAKIWCHETMRVFFDRLTNNDDRNKAFVKLENCIKVHFKEKMKELFDDLVDENGDL
NYERMNGLLFGSYFDLDTEIEDRKYEIIATTAALKNLAYQCLEEYNATHNTKMDVVLFEY
ALQHLNKICRIISMPCGSALLVGMGGSGRQSMTRLAAAILNQTHFQPEITKNYGLNEFRD
DLKTMLKEAGGNGRDSVFLFSDNQIKMEEFLQDIECLLNLGEVPNIFQIDEKQEVLEMVR
LAAQGGNRNLDIPPLQVFQFFVNRCKQKLHLILCFSPIGSGFRNRLRLYPSLVNCCTVDW
YDPWPENALEMVAEKYVKDVNIPDDIKDNVVNILKQFHINALEMSDEYQRETGRVTYFTS
SSYLELINSFAILIERKQKELIDNKNRYLVGLDRLKDAADTVARMQIDLEAKQPQLKILA
EESRQMAEQIEKKTIEAELAQEQVKRDEEIANKQAAESLALNAECEKDLASAIPILEDAI
QSLNTLKPSDITLVKSMKNPPDTVKLVMAAVCVMKSIPPDKVPDASGKKIVDFWGPSKRL
LGDMQFLQSLKEYDKDSIKPEIMAKIRKDFIPHKDFKPEVVAKASSAAEGLCKWIIALDL
YDAVAKIVAPKKASLEEAKNKYEETMKLLNEKRELCIQLDDRVLKLNRDLEAALLKKQKV
EDEVEICRQKLERAETLLGSLGGERDRWISAAGELQLIYDCLPGDILISCGLIAYLSPLT
FDYRLKYGNIWHKLCSELNIPQSQAYNFIIILGSEEKTQNWNIALLPRDTFSIENAIIMD
NSTRYSLFIDPQNQANKWIKEMERNNDIVVIKFTQHDYMKQIETCLEQGRPVLIESIIQD
LEAPLDPILTRQTFRQGTAEFINLGDNMLQVSPNFRLYMTTSLRNPHFLPEVFNKVTVIN
FALTLQGLEDQLLGIVVAKERPDLQELRQNLIKEKAHNQRVLREIEDGILKTLSESAGDI
LEDETAIQMLDDSKNLAADIKRKQEESIVTEQKLESFRESYKQVATHAATLYYSITDLPN
LDPMYQFSLSWYVSLYIFSIENASKSKHIVKRLKFLIDAITNNLYNNVCRSLFEKDKLLF
AFILTTKIMISNNQMRAKDLEFLVCKKQSSITETAIVVNPDPKWITDKVWSQLVQLKEVN
VIFREFIDQFHEHLSEWKEIYDNLKPEELSMPGIWELKLTAFEKLLIINALRSDRFIAAV
AVFIKRQMGETFISPPPFDISKSFEDSNCLTPLIFILSPGVDPMQSILSFAEKLKFDETF
QSVSLGQGQGEKATALIQHAQEFGGWVCLQNCHLADSWMPTLEFLWERMDMFNTDSTFRL
WLTSYPSKCFPTTILQNGIKITNEPPTGLQKNLLRSYNSEPMNDPVFYAGCPDKDRAFTK
LLYGVCFFHAVVQERRKFGALGWNIHYGFNESDFQISVQQLQMFLNQYKEIQYDAIAYLT
GECNYGGRVTDAWDRRTILALLKDFINENVVLDSVYKFSIVDNAYIVPRRTEHREVVKHI
NEIIPNDPSPEIFGLHTNAGIIRDLNASEMFLDAMNSTLTQAATQMASKESEKLIMSMLT
DITRQLPLNFNIEAAYEKFPIDYNESMNTVLVQEMERFNKLLAQIRKDCSDLADAIVGKI
VMTSQLEEIIVSLTMKKIPENWLKKSYPSLKNVGSYIRDFVERLKFLQEWYDVGKPSCFW
LSGFFFTQAFLTGAMQNYARKYKIPIDTLTFDFNTLDVIDGKLITEAPIDGVNIHGLFIE
GARWCFNEKSVVEQIPKVLVDEFPCIHFIPKLYKDLIEKSQYKSPLYKTAERKGTLSTTG
HSTNFVIAILLNTNLNPEHWIKRGVALLCQKND

Protein features from InterProScan

Transcript Database ID Name Start End E.value
36 g5058.t1 Coils Coil Coil 2516 2552 -
35 g5058.t1 Coils Coil Coil 2712 2735 -
34 g5058.t1 Coils Coil Coil 2743 2777 -
37 g5058.t1 Coils Coil Coil 3024 3044 -
33 g5058.t1 Coils Coil Coil 3931 3933 -
19 g5058.t1 Gene3D G3DSA:1.20.140.100 - 818 984 3.9E-41
20 g5058.t1 Gene3D G3DSA:3.20.180.20 - 985 1083 1.6E-29
32 g5058.t1 Gene3D G3DSA:1.20.58.1120 - 1084 1222 3.7E-40
25 g5058.t1 Gene3D G3DSA:3.40.50.300 - 1223 1373 8.4E-69
24 g5058.t1 Gene3D G3DSA:1.10.8.710 - 1374 1481 4.0E-37
27 g5058.t1 Gene3D G3DSA:3.40.50.300 - 1485 1752 1.1E-85
28 g5058.t1 Gene3D G3DSA:3.40.50.300 - 1853 2400 3.3E-182
22 g5058.t1 Gene3D G3DSA:1.20.920.30 - 2021 2234 3.3E-182
23 g5058.t1 Gene3D G3DSA:1.20.920.20 - 2461 2812 6.5E-105
30 g5058.t1 Gene3D G3DSA:3.40.50.11510 - 2852 3020 3.4E-62
31 g5058.t1 Gene3D G3DSA:1.10.8.1220 - 3101 3191 5.5E-14
26 g5058.t1 Gene3D G3DSA:3.40.50.300 - 3317 3443 9.6E-38
29 g5058.t1 Gene3D G3DSA:1.10.8.720 - 3444 3616 6.4E-51
21 g5058.t1 Gene3D G3DSA:1.20.1270.280 - 3617 3786 1.2E-19
18 g5058.t1 Gene3D G3DSA:3.10.490.20 - 3787 3933 3.1E-6
12 g5058.t1 PANTHER PTHR10676:SF387 DYNEIN HEAVY CHAIN AT 62B 745 3907 0.0
13 g5058.t1 PANTHER PTHR10676 DYNEIN HEAVY CHAIN FAMILY PROTEIN 745 3907 0.0
5 g5058.t1 Pfam PF08393 Dynein heavy chain, N-terminal region 2 651 1078 1.9E-120
3 g5058.t1 Pfam PF12774 Hydrolytic ATP binding site of dynein motor region 1208 1534 1.4E-153
9 g5058.t1 Pfam PF17852 Dynein heavy chain AAA lid domain 1706 1835 1.7E-23
7 g5058.t1 Pfam PF12775 P-loop containing dynein motor region 1848 2019 3.6E-67
8 g5058.t1 Pfam PF17857 AAA+ lid domain 2053 2156 1.4E-10
2 g5058.t1 Pfam PF12780 P-loop containing dynein motor region D4 2213 2471 2.3E-97
1 g5058.t1 Pfam PF12777 Microtubule-binding stalk of dynein motor 2490 2827 1.7E-38
4 g5058.t1 Pfam PF12781 ATP-binding dynein motor region 2859 3080 2.3E-80
11 g5058.t1 Pfam PF03028 Dynein heavy chain region D6 P-loop domain 3329 3442 3.4E-42
10 g5058.t1 Pfam PF18198 Dynein heavy chain AAA lid domain 3466 3619 3.2E-53
6 g5058.t1 Pfam PF18199 Dynein heavy chain C-terminal domain 3629 3929 1.1E-103
16 g5058.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1224 1434 4.87E-26
15 g5058.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1454 1675 6.29E-16
14 g5058.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1867 2130 1.95E-17
17 g5058.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2207 2482 7.49E-18

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5058/g5058.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5058.t1.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007018 microtubule-based movement BP
GO:0030286 dynein complex CC
GO:0005524 ATP binding MF
GO:0008569 minus-end-directed microtubule motor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values