General information for g5100.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dynamin-1-like protein.
Parent gene
- The parent gene g5100 is located on chr_2: 6874307..6875040 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5100 | g5100.t1 | TTS | g5100.t1 | 6871613 | 6871613 |
| chr_2 | g5100 | g5100.t1 | isoform | g5100.t1 | 6871942 | 6875040 |
| chr_2 | g5100 | g5100.t1 | exon | g5100.t1.exon1 | 6871942 | 6872044 |
| chr_2 | g5100 | g5100.t1 | cds | g5100.t1.CDS1 | 6871942 | 6872044 |
| chr_2 | g5100 | g5100.t1 | exon | g5100.t1.exon2 | 6872466 | 6872518 |
| chr_2 | g5100 | g5100.t1 | cds | g5100.t1.CDS2 | 6872466 | 6872518 |
| chr_2 | g5100 | g5100.t1 | exon | g5100.t1.exon3 | 6872586 | 6872750 |
| chr_2 | g5100 | g5100.t1 | cds | g5100.t1.CDS3 | 6872586 | 6872750 |
| chr_2 | g5100 | g5100.t1 | exon | g5100.t1.exon4 | 6872805 | 6873413 |
| chr_2 | g5100 | g5100.t1 | cds | g5100.t1.CDS4 | 6872805 | 6873413 |
| chr_2 | g5100 | g5100.t1 | exon | g5100.t1.exon5 | 6873468 | 6874246 |
| chr_2 | g5100 | g5100.t1 | cds | g5100.t1.CDS5 | 6873468 | 6874246 |
| chr_2 | g5100 | g5100.t1 | exon | g5100.t1.exon6 | 6874305 | 6874526 |
| chr_2 | g5100 | g5100.t1 | cds | g5100.t1.CDS6 | 6874305 | 6874526 |
| chr_2 | g5100 | g5100.t1 | exon | g5100.t1.exon7 | 6874589 | 6874733 |
| chr_2 | g5100 | g5100.t1 | cds | g5100.t1.CDS7 | 6874589 | 6874733 |
| chr_2 | g5100 | g5100.t1 | exon | g5100.t1.exon8 | 6874939 | 6875040 |
| chr_2 | g5100 | g5100.t1 | cds | g5100.t1.CDS8 | 6874939 | 6875040 |
| chr_2 | g5100 | g5100.t1 | TSS | g5100.t1 | 6875089 | 6875089 |
Sequences
>g5100.t1 Gene=g5100 Length=2178
ATGGAGGCATTAATTCCAGTCGTAAATAAGCTACAAGATGTATTTAACACAGTGGGATCG
GATTCAATTCAATTGCCACAGATTGTCGTATTAGGAAGTCAAAGCTCAGGCAAGTCATCA
GTGCTCGAAAGTCTTGTTGGCCGTTCATTTCTTCCTCGTGGAACTGGAATTGTTACTCGA
AGACCACTTGTACTTCAACTCATTTATTGTCCTCTTGATGATCGTGAACATAGATCAGCA
GATAAAGGAACTGTGTCATTAGCAGAATGGGGCAAATTTCTTCATACGAAAAACAAAATT
TTCACAGATTTCGATGAAATTCGTGCCGAGATTGAAGCTGAAACAGATAGGATGGCAGGA
TCAAATAAAGGAATTTGTCCAGAACCCATAAATTTGAAAATTTATTCTACTCGCGTTGTA
AATCTTACTTTAGTCGATTTACCAGGAATTACAAAAGTTCCTGTAGGAGATCAACCAGAA
GATATTGAAAATCAAATCAGAGATTTACTTTTTAAATACATTGAAAATCCAAATTCCATC
ATTTTGGCTGTTACTGCTGCCAATACAGATATTGCTACAAGTGAAAGTCTTAAAATGGCA
AAAGATGTTGATCCGGATGGTAGAAGAACGTTAGCTGTACTTACAAAATTAGATCTTATG
GATGCTGGTACAGATGCAATCGATATGCTTTGTGGACGAGTTATTCCAGTTAAACTTGGC
ATCATTGGTGTAGTGAATCGATCACAACAAGACATAATGGATAATAAGACAATTGAAGAG
CAATTGAAAGATGAAGCTGCATATTTGCAACGTAAATACCCTACTTTGGCTACACGCAAT
GGCACACCTTATTTGGCAAAAACACTCAATCGTCTGTTAATGCATCACATTCGTGATTGT
CTACCTGATCTCAAAACTCGTGTAAATGTAATGGCTTCACAATTTCAATCTCTTCTAAAT
TCATATGGCGAAGATGTGACTGATAAGAGTCAAACTTTATTGCAAATCATTACAAAATTC
GCAAGTGCATATTGTGCGACAATTGAAGGAACCGCTCGAAATATTGAAACAACAGAATTA
TGTGGTGGCGCGAGAATTTGTTATATTTTCCATGAGACATTTGGCAGAACATTAGATTCA
ATACATCCGCTTGCTGGGCTTTCAAAAATGGATATATTGACTGCCATAAGAAATGCAACC
GGACCACGACCAGCATTGTTTGTTCCCGAAGTGTCGTTTGAATTATTGGTCAAACGTCAA
ATTCGACGTTTAGAAGAGCCATCACTTAGATGTGTCGAGTTGATTCATGAGGAAATGCAA
AGAATTATTCAACATTGCGGTACAGAAGTGCAGCAAGAAATGCTTCGCTTTCCTAAATTA
CACGAGAAAATTGTTGATGTTGTAACGCAATTATTGCGACGACGTTTACCTACAACTAAT
TCAATGGTGGAAAATTTAGTTGCCATAGAACTTGCATATATCAATACGAAACATCCAGAT
TTTTACAAAGAAGCTGCAATGGTGCCGAGCTTATTGAAAAATGATCAAGGTGAACCATGG
AATATTCCAGGAAATCCGCCATCTCGACGCATTCTAAAACCAACTCAAAATGCTCCAAAT
TCAAACAGTGATATCAATGATTTATCAAATCATATTAACGAGGCTGGTTCACAACAGCAA
GCAAATTGGCTCTCAAATATCTTACCACCTGCAAAAACTGAAAGTGTTGAGAGCTCTCAA
TCAAATACTCCAACTCATGGTATTATGAGTCCAATGAAGCCTGTCAATTTGCTTCCAGAT
ATTCCAATAAATACTTCATCAAGAAAATTAACGGATAAAGAACAAAAGGATTGTGATGAT
TCGGTGCCAAAGGCTATTATGCATTTTCTCGTTAATTTTGTTAAAGACAATGTTCAATCT
GAACTTGTTACGCATTTGTATAAATCTGAGCGCGCTGAGGAATATCTCAATGAGTCAGAG
CATATTGCTATACGTAGAAAGGAAGCATCAGACATGTTGAAGGCACTCACGAGAGCTAAT
CACATAATATCGGAGATCCGGGAAACTCATTTATGGTATATGAAAATGTTGACATTGTCT
GAAAATTTACCAATTACTCTGATATATAATTGGAAATCAAAGCCGATTTCAATAAATTTT
TGTGACTTCACTCGTTAA
>g5100.t1 Gene=g5100 Length=725
MEALIPVVNKLQDVFNTVGSDSIQLPQIVVLGSQSSGKSSVLESLVGRSFLPRGTGIVTR
RPLVLQLIYCPLDDREHRSADKGTVSLAEWGKFLHTKNKIFTDFDEIRAEIEAETDRMAG
SNKGICPEPINLKIYSTRVVNLTLVDLPGITKVPVGDQPEDIENQIRDLLFKYIENPNSI
ILAVTAANTDIATSESLKMAKDVDPDGRRTLAVLTKLDLMDAGTDAIDMLCGRVIPVKLG
IIGVVNRSQQDIMDNKTIEEQLKDEAAYLQRKYPTLATRNGTPYLAKTLNRLLMHHIRDC
LPDLKTRVNVMASQFQSLLNSYGEDVTDKSQTLLQIITKFASAYCATIEGTARNIETTEL
CGGARICYIFHETFGRTLDSIHPLAGLSKMDILTAIRNATGPRPALFVPEVSFELLVKRQ
IRRLEEPSLRCVELIHEEMQRIIQHCGTEVQQEMLRFPKLHEKIVDVVTQLLRRRLPTTN
SMVENLVAIELAYINTKHPDFYKEAAMVPSLLKNDQGEPWNIPGNPPSRRILKPTQNAPN
SNSDINDLSNHINEAGSQQQANWLSNILPPAKTESVESSQSNTPTHGIMSPMKPVNLLPD
IPINTSSRKLTDKEQKDCDDSVPKAIMHFLVNFVKDNVQSELVTHLYKSERAEEYLNESE
HIAIRRKEASDMLKALTRANHIISEIRETHLWYMKMLTLSENLPITLIYNWKSKPISINF
CDFTR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g5100.t1 | CDD | cd08771 | DLP_1 | 23 | 302 | 3.8186E-138 |
| 13 | g5100.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 683 | 1.8E-260 |
| 15 | g5100.t1 | Gene3D | G3DSA:1.20.120.1240 | - | 323 | 657 | 1.8E-260 |
| 14 | g5100.t1 | Gene3D | G3DSA:2.30.29.30 | - | 507 | 600 | 1.8E-260 |
| 4 | g5100.t1 | PANTHER | PTHR11566:SF39 | DYNAMIN-1-LIKE PROTEIN | 1 | 692 | 0.0 |
| 5 | g5100.t1 | PANTHER | PTHR11566 | DYNAMIN | 1 | 692 | 0.0 |
| 10 | g5100.t1 | PRINTS | PR00195 | Dynamin signature | 25 | 43 | 3.1E-56 |
| 9 | g5100.t1 | PRINTS | PR00195 | Dynamin signature | 50 | 67 | 3.1E-56 |
| 6 | g5100.t1 | PRINTS | PR00195 | Dynamin signature | 136 | 153 | 3.1E-56 |
| 8 | g5100.t1 | PRINTS | PR00195 | Dynamin signature | 186 | 204 | 3.1E-56 |
| 11 | g5100.t1 | PRINTS | PR00195 | Dynamin signature | 205 | 221 | 3.1E-56 |
| 7 | g5100.t1 | PRINTS | PR00195 | Dynamin signature | 228 | 247 | 3.1E-56 |
| 3 | g5100.t1 | Pfam | PF00350 | Dynamin family | 28 | 216 | 1.2E-52 |
| 2 | g5100.t1 | Pfam | PF01031 | Dynamin central region | 226 | 506 | 8.9E-103 |
| 1 | g5100.t1 | Pfam | PF02212 | Dynamin GTPase effector domain | 616 | 685 | 2.3E-20 |
| 17 | g5100.t1 | ProSitePatterns | PS00410 | Dynamin-type guanine nucleotide-binding (G) domain signature. | 51 | 60 | - |
| 20 | g5100.t1 | ProSiteProfiles | PS51718 | Dynamin-type guanine nucleotide-binding (G) domain profile. | 22 | 302 | 59.926 |
| 21 | g5100.t1 | ProSiteProfiles | PS51388 | GED domain profile. | 592 | 691 | 23.206 |
| 19 | g5100.t1 | SMART | SM00053 | dynamin_3 | 1 | 255 | 4.1E-126 |
| 18 | g5100.t1 | SMART | SM00302 | GED_2 | 613 | 686 | 4.5E-15 |
| 12 | g5100.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 309 | 1.44E-74 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5100/g5100.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5100.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
| GO:0016559 | peroxisome fission | BP |
| GO:0003924 | GTPase activity | MF |
| GO:0000266 | mitochondrial fission | BP |
KEGG
Orthology
- This transcript has been annotated with K17065 (dynamin 1-like protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
