General information for g5100.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dynamin-1-like protein.
Parent gene
- The parent gene g5100 is located on chr_2: 6874307..6875040 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5100 | g5100.t5 | TTS | g5100.t5 | 6871944 | 6871944 |
| chr_2 | g5100 | g5100.t5 | isoform | g5100.t5 | 6872805 | 6873468 |
| chr_2 | g5100 | g5100.t5 | exon | g5100.t5.exon1 | 6872805 | 6873413 |
| chr_2 | g5100 | g5100.t5 | cds | g5100.t5.CDS1 | 6872805 | 6873347 |
| chr_2 | g5100 | g5100.t5 | exon | g5100.t5.exon2 | 6873464 | 6873468 |
| chr_2 | g5100 | g5100.t5 | TSS | g5100.t5 | NA | NA |
Sequences
>g5100.t5 Gene=g5100 Length=614
GGTTAGTCAAACGTCAAATTCGACGTTTAGAAGAGCCATCACTTAGATGTGTCGAGTTGA
TTCATGAGGAAATGCAAAGAATTATTCAACATTGCGGTACAGAAGTGCAGCAAGAAATGC
TTCGCTTTCCTAAATTACACGAGAAAATTGTTGATGTTGTAACGCAATTATTGCGACGAC
GTTTACCTACAACTAATTCAATGGTGGAAAATTTAGTTGCCATAGAACTTGCATATATCA
ATACGAAACATCCAGATTTTTACAAAGAAGCTGCAATGGTGCCGAGCTTATTGAAAAATG
ATCAAGGTGAACCATGGAATATTCCAGGAAATCCGCCATCTCGACGCATTCTAAAACCAA
CTCAAAATGCTCCAAATTCAAACAGTGATATCAATGATTTATCAAATCATATTAACGAGG
CTGGTTCACAACAGCAAGCAAATTGGCTCTCAAATATCTTACCACCTGCAAAAACTGAAA
GTGTTGAGAGCTCTCAATCAAATACTCCAACTCATGGTATTATGAGTCCAATGAAGCCTG
TCAATTTGCTTCCAGATATTCCAATAAATACTTCATCAAGAAAATTAACGGATAAAGAAC
AAAAGGATTGTGAT
>g5100.t5 Gene=g5100 Length=181
MQRIIQHCGTEVQQEMLRFPKLHEKIVDVVTQLLRRRLPTTNSMVENLVAIELAYINTKH
PDFYKEAAMVPSLLKNDQGEPWNIPGNPPSRRILKPTQNAPNSNSDINDLSNHINEAGSQ
QQANWLSNILPPAKTESVESSQSNTPTHGIMSPMKPVNLLPDIPINTSSRKLTDKEQKDC
D
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g5100.t5 | Gene3D | G3DSA:1.20.120.1240 | - | 1 | 83 | 2.6E-24 |
| 4 | g5100.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 151 | - |
| 5 | g5100.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 181 | - |
| 2 | g5100.t5 | PANTHER | PTHR11566:SF50 | SI:DKEY-32E23.4 | 1 | 181 | 3.2E-35 |
| 3 | g5100.t5 | PANTHER | PTHR11566 | DYNAMIN | 1 | 181 | 3.2E-35 |
| 1 | g5100.t5 | Pfam | PF01031 | Dynamin central region | 1 | 68 | 8.7E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5100/g5100.t5; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5100.t5.fa.iupred3.txt does not exist
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
