Gene loci information

Transcript annotation

  • This transcript has been annotated as Dynamin-1-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5100 g5100.t7 isoform g5100.t7 6874307 6875040
chr_2 g5100 g5100.t7 exon g5100.t7.exon1 6874307 6874526
chr_2 g5100 g5100.t7 cds g5100.t7.CDS1 6874309 6874526
chr_2 g5100 g5100.t7 exon g5100.t7.exon2 6874589 6874733
chr_2 g5100 g5100.t7 cds g5100.t7.CDS2 6874589 6874733
chr_2 g5100 g5100.t7 exon g5100.t7.exon3 6874939 6875040
chr_2 g5100 g5100.t7 cds g5100.t7.CDS3 6874939 6875040
chr_2 g5100 g5100.t7 TSS g5100.t7 6875089 6875089
chr_2 g5100 g5100.t7 TTS g5100.t7 NA NA

Sequences

>g5100.t7 Gene=g5100 Length=467
ATGGAGGCATTAATTCCAGTCGTAAATAAGCTACAAGATGTATTTAACACAGTGGGATCG
GATTCAATTCAATTGCCACAGATTGTCGTATTAGGAAGTCAAAGCTCAGGCAAGTCATCA
GTGCTCGAAAGTCTTGTTGGCCGTTCATTTCTTCCTCGTGGAACTGGAATTGTTACTCGA
AGACCACTTGTACTTCAACTCATTTATTGTCCTCTTGATGATCGTGAACATAGATCAGCA
GATAAAGGAACTGTGTCATTAGCAGAATGGGGCAAATTTCTTCATACGAAAAACAAAATT
TTCACAGATTTCGATGAAATTCGTGCCGAGATTGAAGCTGAAACAGATAGGATGGCAGGA
TCAAATAAAGGAATTTGTCCAGAACCCATAAATTTGAAAATTTATTCTACTCGCGTTGTA
AATCTTACTTTAGTCGATTTACCAGGAATTACAAAAGTTCCTGTAGG

>g5100.t7 Gene=g5100 Length=155
MEALIPVVNKLQDVFNTVGSDSIQLPQIVVLGSQSSGKSSVLESLVGRSFLPRGTGIVTR
RPLVLQLIYCPLDDREHRSADKGTVSLAEWGKFLHTKNKIFTDFDEIRAEIEAETDRMAG
SNKGICPEPINLKIYSTRVVNLTLVDLPGITKVPV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g5100.t7 CDD cd08771 DLP_1 23 155 2.97504E-67
8 g5100.t7 Gene3D G3DSA:3.40.50.300 - 1 155 7.7E-58
2 g5100.t7 PANTHER PTHR11566:SF39 DYNAMIN-1-LIKE PROTEIN 1 155 4.8E-72
3 g5100.t7 PANTHER PTHR11566 DYNAMIN 1 155 4.8E-72
6 g5100.t7 PRINTS PR00195 Dynamin signature 25 43 9.4E-31
5 g5100.t7 PRINTS PR00195 Dynamin signature 50 67 9.4E-31
4 g5100.t7 PRINTS PR00195 Dynamin signature 136 153 9.4E-31
1 g5100.t7 Pfam PF00350 Dynamin family 28 154 9.3E-35
10 g5100.t7 ProSitePatterns PS00410 Dynamin-type guanine nucleotide-binding (G) domain signature. 51 60 -
12 g5100.t7 ProSiteProfiles PS51718 Dynamin-type guanine nucleotide-binding (G) domain profile. 22 155 36.476
11 g5100.t7 SMART SM00053 dynamin_3 1 155 2.7E-27
7 g5100.t7 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1 153 2.99E-37

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5100/g5100.t7; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5100.t7.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF
GO:0016559 peroxisome fission BP
GO:0003924 GTPase activity MF
GO:0000266 mitochondrial fission BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values