General information for g5102.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g5102 is located on chr_2: 6879006..6880878 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5102 | g5102.t17 | TTS | g5102.t17 | 6878294 | 6878294 |
| chr_2 | g5102 | g5102.t17 | isoform | g5102.t17 | 6879006 | 6880878 |
| chr_2 | g5102 | g5102.t17 | exon | g5102.t17.exon1 | 6879006 | 6879419 |
| chr_2 | g5102 | g5102.t17 | cds | g5102.t17.CDS1 | 6879253 | 6879419 |
| chr_2 | g5102 | g5102.t17 | exon | g5102.t17.exon2 | 6879481 | 6880878 |
| chr_2 | g5102 | g5102.t17 | cds | g5102.t17.CDS2 | 6879481 | 6879625 |
| chr_2 | g5102 | g5102.t17 | TSS | g5102.t17 | NA | NA |
Sequences
>g5102.t17 Gene=g5102 Length=1812
TTATATTTGAGTAACAAGCATTTTTGACATATATGGTCCATCTAACTCATAACCCATTTT
TCTATAATAATTTCTCGTTCCTACACCAGAGATGACTGCAATCTTTTCACTTCCATGTTC
TTCTACAGCTATTCTTTCAGCTTCTTCCATCAACAACATTCCAAAGCCTTGATGTTGAAA
TTTCGTTGGATCACGTGCATTTACTGGTACTACTGAGCCATATACATGAAGTTCTCTGAC
TATTGAACAAGCACCTTTTAATTCTGGTCTAAACGTCTGTTCAGAACATTTTCTTAATCG
TAATAAACCAACTAAAATGTCTTGATCTGGATCTTCATATGATAAAAATGTTTCCCAACC
TCCATTTGCAAAGTAGTCACGACGAATGAGTTCAACTTCATAAGGTCTAACTTTATTATG
AATTTCTTGAATGCCAACTTCTCGTGTTCTTATATCTCTGCAATCTGTACCAAGATCTTT
CATACGAGCCAAAGCTAATTCTCTTAAATTTCCATTATCTACACCAGAGCTAACAAGTGG
CATTGGAATATCTCGTTGAACTCGATAAACTCTTGTCCAAGGTGCAACAAGTGATAAAAT
TTTTGCTACCAAATCGACAAGTGTTGAAGGTGGATATGACTTGTAACGACCAGTCTTCCA
AAGTTCATATAATCCTGTTCCACGAATTACAAGAGTTGGATAAATTTTTAAACCGTCAGC
TCTAAAAGCAGGATTTTCAAAGAATTCAATAAACTGCTCGATATCACGTTGAAAATCCAT
GTTCGGAAGATCTGGCATCATATGTGTTACAACTTTGAAGCCAGCATCTTTAGACATATG
AAAAGATTCAGAAACAGCTTTCACAGTATGTCCTCTATTTGTGTCTCTCGCTACATCCTC
ATAAACTGATTGGACTCCAATTTCAAGTCGTGTGCATCCATAATTTAACATATCACTTAA
ATGACGTTTAAGACAATAATCTGGTCTAGTTTCGATTGTGATACCAATACATTTAGTATG
AGATTTTTCTGAATATTTAACAGCTTCAGCGACATTTTTTGATGTGTGACCAGAAAGAGC
ATCATGTAAATTTCTTATGAAATAATCACGATAATCCTCAGGCAAACTCATAAATGTTCC
TCCCATAACAATAAATTCTATTTTATCAACTGAATGTCCCAATTGCTGCAACTGTTCAAC
TCGATGACGTGTTTGTAAAAAAGGATTATATCGAGCACGAATTGCTCTCATTGATGTCGG
CTCATAACCGGTATAACTTTGTGTTGAATATTCAAAATCACTATCTGGTCCACCTGGGCA
ATAAACACAAATGTTTCCAGTATAATTTATGTGTGGACAACGATGTGGTTTGCACATCAC
AGCAACAACAGCAATCTGAAGCTGTTCACACTGGTTTTGCTTTTAATTTTGGTAAAAGTA
TTTTCTTTGACTCTTGTGGTACAGCTGCAATTATATCAACTAATCTTGGTGTATTTTCAA
GTGCATATTTTGATGAAAATTTTACTTTCAATCTATTCAAATTTACATCTTTTCCTTCCT
CATGACATTTCAATAATTCTTGTATAATTTCACCAATTACAAGCACCATTCGCTCTTCAG
AGCTCAAACCAACTCCTAATTTCTTCTTTGTCATATTATCAAAATTATTCAATACTTTAT
TTCACTTAAAAATTATTATTTCGTGAATTTGTTTTGAAAATTTTTCTTAAAAAACGTGTG
TTGACAAGTGAATGCCCCTCTTTAATAAAAAATTCTTTATAAAAACATAAAATTGCAAAA
AATCATTAAAAA
>g5102.t17 Gene=g5102 Length=103
MSAHNRYNFVLNIQNHYLVHLGNKHKCFQYNLCVDNDVVCTSQQQQQSEAVHTGFAFNFG
KSIFFDSCGTAAIISTNLGVFSSAYFDENFTFNLFKFTSFPSS
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5102/g5102.t17; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5102.t17.fa.iupred3.txt does not exist
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
