Gene loci information

Transcript annotation

  • This transcript has been annotated as V-type proton ATPase subunit H.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5147 g5147.t7 TSS g5147.t7 7281189 7281189
chr_2 g5147 g5147.t7 isoform g5147.t7 7281299 7283802
chr_2 g5147 g5147.t7 exon g5147.t7.exon1 7281299 7281350
chr_2 g5147 g5147.t7 cds g5147.t7.CDS1 7281299 7281350
chr_2 g5147 g5147.t7 exon g5147.t7.exon2 7281419 7281681
chr_2 g5147 g5147.t7 cds g5147.t7.CDS2 7281419 7281681
chr_2 g5147 g5147.t7 exon g5147.t7.exon3 7281740 7281958
chr_2 g5147 g5147.t7 cds g5147.t7.CDS3 7281740 7281958
chr_2 g5147 g5147.t7 exon g5147.t7.exon4 7282573 7282851
chr_2 g5147 g5147.t7 cds g5147.t7.CDS4 7282573 7282851
chr_2 g5147 g5147.t7 exon g5147.t7.exon5 7283058 7283192
chr_2 g5147 g5147.t7 cds g5147.t7.CDS5 7283058 7283192
chr_2 g5147 g5147.t7 exon g5147.t7.exon6 7283250 7283802
chr_2 g5147 g5147.t7 cds g5147.t7.CDS6 7283250 7283801
chr_2 g5147 g5147.t7 TTS g5147.t7 7284480 7284480

Sequences

>g5147.t7 Gene=g5147 Length=1501
ATGGCCAGCAACGTCGATGACCTGATTTCATCTCATTTAGATGACAAAATTGATATGATT
GCTGCTACTAGTGTCTTACAGCAACAAGCTAGTGACATTCGAGCTCAGAAAATCAATTGG
CAATCATATCATCAATCTCAGATGATTTCGAATGAAGATTTTAATTGCATCACGGCTCTT
GATGGCGAGAAGAAAGCTCAATATTTGAAAGATAATCAGTATCAGAGCGCAAAAACCTTT
CTGAATCTTCTCAGTCATGTGTCGAAAGATACAACAATTCAATACTTGCTTGTCATGATT
GATGACTTACTTACTGAGGATCGAACTCGTGTCGATATATTTTTGGATTTTGCTTCTAAA
CGTAAAGAAACTGTTTGGGGACCTTTCCTTTCTTTATTGAATCGCTCTGATGGCTTCATC
ATTCATATGGCATCAAGAATTATCGCTAAATTGGCATGCTGGGGTCAAGATCAAATGCCC
AAATCAGACTTAAACTTCTACTTGCAATGGCTTAAAGATCAACTTACAGTCAGCGCGACT
GCATACAATAAGGAAATGGAAGAGATTCTTAAACATCGTGGATTTGAAAAGAAACATCAT
CATCATCACCATCATATGCATCTCTTCCACTTTCCAGGCCAACATGGCCATCATCATCAT
CACCAACACCATCACCACAACAAGGATCATCAGCAACAAACGGTGACTGTTGAGAAATAT
CGAGAGATTTCGAGCGCACTTGATGAGCCCTCGAATGCTGCACAAAACAGCTCTGCTTCA
CATTCGTCTACTTCTAATCATTTAAAAATGACGGATAATGAATACATTCAATCAGTTGGA
CGTTGTTTGCAAATGATGCTCAGAGTTGATGAATATCGTTTTGCCTTTGTTACAGTTGAT
GGCATCAGTACTTTGATTTCTATTCTTTCATCACGTGTTAATTTCCAAGTGCAATATCAA
CTTGTATTTTGCTTATGGGTTTTGACTTTCAATCCTCTTCTTGCTGAGAAGATGAATAAA
TTCAATGTTATTCCAATTCTTGCTGATATTCTTAGTGATTGTGCAAAGGAGAAAGTTACA
CGCATTATACTCGCCGTCTTTAGAAATTTGATCGAAAAGCCAGAGGATGCACAAGTGTCG
AAGGAACACTGCATTGCAATGGTTCAATGTAAAGTTCTCAAACAATTGTCCATTCTCGAG
CAACGTCGTTTTGACGATGAAGACATTACGTCTGATGTTGAATTTCTAACAGAAAGATTG
CAGACATCTGTTCAAGATTTGTCTTCATTTGATGAATATGCAACTGAAATCAAGAGCGGA
CGCTTAGAATGGTCACCTGTGCACAAATCAGCTAAATTCTGGCGTGAAAATGCACAACGT
TTGAATGAGAAGAATTATGAATTGCTTAGAATTTTAATTCATTTACTGGACACATCACGC
GATCCATTAGTTCTCTCAGTTGCCAGTTTTGACATTGGTGAATATGTTCGTCATTATCCA
A

>g5147.t7 Gene=g5147 Length=500
MASNVDDLISSHLDDKIDMIAATSVLQQQASDIRAQKINWQSYHQSQMISNEDFNCITAL
DGEKKAQYLKDNQYQSAKTFLNLLSHVSKDTTIQYLLVMIDDLLTEDRTRVDIFLDFASK
RKETVWGPFLSLLNRSDGFIIHMASRIIAKLACWGQDQMPKSDLNFYLQWLKDQLTVSAT
AYNKEMEEILKHRGFEKKHHHHHHHMHLFHFPGQHGHHHHHQHHHHNKDHQQQTVTVEKY
REISSALDEPSNAAQNSSASHSSTSNHLKMTDNEYIQSVGRCLQMMLRVDEYRFAFVTVD
GISTLISILSSRVNFQVQYQLVFCLWVLTFNPLLAEKMNKFNVIPILADILSDCAKEKVT
RIILAVFRNLIEKPEDAQVSKEHCIAMVQCKVLKQLSILEQRRFDDEDITSDVEFLTERL
QTSVQDLSSFDEYATEIKSGRLEWSPVHKSAKFWRENAQRLNEKNYELLRILIHLLDTSR
DPLVLSVASFDIGEYVRHYP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g5147.t7 Gene3D G3DSA:1.25.10.10 - 16 190 6.4E-11
9 g5147.t7 Gene3D G3DSA:1.25.10.10 - 197 428 3.5E-39
11 g5147.t7 Gene3D G3DSA:1.25.40.150 - 440 500 2.0E-18
8 g5147.t7 MobiDBLite mobidb-lite consensus disorder prediction 246 266 -
7 g5147.t7 MobiDBLite mobidb-lite consensus disorder prediction 248 266 -
3 g5147.t7 PANTHER PTHR10698:SF0 V-TYPE PROTON ATPASE SUBUNIT H 25 500 7.1E-130
4 g5147.t7 PANTHER PTHR10698 V-TYPE PROTON ATPASE SUBUNIT H 25 500 7.1E-130
17 g5147.t7 PIRSF PIRSF032184 V-ATP_synth_H 15 500 3.9E-98
2 g5147.t7 Pfam PF03224 V-ATPase subunit H 24 420 2.6E-118
1 g5147.t7 Pfam PF11698 V-ATPase subunit H 427 500 6.5E-26
13 g5147.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 293 -
15 g5147.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 294 311 -
14 g5147.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 312 316 -
16 g5147.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 317 335 -
12 g5147.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 336 500 -
6 g5147.t7 SUPERFAMILY SSF48371 ARM repeat 17 220 6.33E-32
5 g5147.t7 SUPERFAMILY SSF48371 ARM repeat 214 500 4.3E-87

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5147/g5147.t7; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5147.t7.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:1902600 proton transmembrane transport BP
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain CC
GO:0046961 proton-transporting ATPase activity, rotational mechanism MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values