General information for g5194.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable palmitoyltransferase ZDHHC24.
Parent gene
- The parent gene g5194 is located on chr_2: 7609963..7611055 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5194 | g5194.t3 | TTS | g5194.t3 | 7604722 | 7604722 |
| chr_2 | g5194 | g5194.t3 | isoform | g5194.t3 | 7604825 | 7606322 |
| chr_2 | g5194 | g5194.t3 | exon | g5194.t3.exon1 | 7604825 | 7605450 |
| chr_2 | g5194 | g5194.t3 | cds | g5194.t3.CDS1 | 7604825 | 7605450 |
| chr_2 | g5194 | g5194.t3 | exon | g5194.t3.exon2 | 7605505 | 7605562 |
| chr_2 | g5194 | g5194.t3 | cds | g5194.t3.CDS2 | 7605505 | 7605562 |
| chr_2 | g5194 | g5194.t3 | exon | g5194.t3.exon3 | 7605638 | 7605657 |
| chr_2 | g5194 | g5194.t3 | cds | g5194.t3.CDS3 | 7605638 | 7605657 |
| chr_2 | g5194 | g5194.t3 | exon | g5194.t3.exon4 | 7606112 | 7606322 |
| chr_2 | g5194 | g5194.t3 | cds | g5194.t3.CDS4 | 7606112 | 7606322 |
| chr_2 | g5194 | g5194.t3 | TSS | g5194.t3 | 7606630 | 7606630 |
Sequences
>g5194.t3 Gene=g5194 Length=915
ATGCCATCATTATCGAGACTAAACAAGGATTTCATTTCATCATTACTGCTGTCACAAAAT
AAAATTTCGGAAGAAACAGAAACACAGAAATCAAATAATGATATTGAGACTTATGTTGTA
TCTGATGATGAAGATGCAGATGCTTATAATTCAAAATTATCCAAAAGGAAAGCTGTTGAA
GTAGGAGAAAAATTACTAAAAGAACGTATAATGTTTTACTATGAACTTCATTATGTTCTT
TATCACATTCATGGATTTTCAATTATTCTGCTAGTCAACTATATACTTGACACAAGTGTT
TTTGCTTCTCCTGAAACAATGACAACAACTCGCTTCAAAAATGATCCATCAGCAAAAGAT
TGGAGTTTGTGTGAAAAATGCGAAATAATTGTACCGCCTCGAAGCTGGCATTGTGATACA
TGTAATGTCTGCATTCTAAAACGTGATCATCACTGTATGTTTGCTGGAAATTGTATTGGC
TATAATAATCATCGACATTTTTTGGTGTTTTTACTTTACTTCTTTATTGGAACAACTTAT
GCATTCTTTTATAATTCATACTATTTGTGGATTGTTAATGGTTCACTTTTTCTTCAATGG
ATTACACCTTTGAAAATGATTTTTCCTATGTTTATGTTCATGTTTAATACATCAAATGAA
ATTCATCTTTTATTATACATGCTGATCTTAATTGGAGCAATTTTTACTGGAGTTTTGATG
GTTTATCATGGACGTCTTATAGTTAAAAATGCAACAGCACATGAGAAAAACAAAGGCGCA
TATGATCTCGGCCTTAATAAAAATTTGAAGATTGTTTTTGGCGACAATTGGCTGTCATGC
ATTTTATGGCCATTTGCAAAGAGCACATTACCTGAAATTTACTGGAATGCAGCAGAGAGC
CAAAAGAGCAAATAA
>g5194.t3 Gene=g5194 Length=304
MPSLSRLNKDFISSLLLSQNKISEETETQKSNNDIETYVVSDDEDADAYNSKLSKRKAVE
VGEKLLKERIMFYYELHYVLYHIHGFSIILLVNYILDTSVFASPETMTTTRFKNDPSAKD
WSLCEKCEIIVPPRSWHCDTCNVCILKRDHHCMFAGNCIGYNNHRHFLVFLLYFFIGTTY
AFFYNSYYLWIVNGSLFLQWITPLKMIFPMFMFMFNTSNEIHLLLYMLILIGAIFTGVLM
VYHGRLIVKNATAHEKNKGAYDLGLNKNLKIVFGDNWLSCILWPFAKSTLPEIYWNAAES
QKSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g5194.t3 | PANTHER | PTHR22883 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN | 80 | 270 | 7.8E-29 |
| 3 | g5194.t3 | PANTHER | PTHR22883:SF23 | PALMITOYLTRANSFERASE | 80 | 270 | 7.8E-29 |
| 1 | g5194.t3 | Pfam | PF01529 | DHHC palmitoyltransferase | 121 | 257 | 2.7E-30 |
| 11 | g5194.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 75 | - |
| 15 | g5194.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 76 | 96 | - |
| 13 | g5194.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 97 | 166 | - |
| 14 | g5194.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 167 | 184 | - |
| 9 | g5194.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 185 | 195 | - |
| 16 | g5194.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 196 | 215 | - |
| 12 | g5194.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 216 | 220 | - |
| 17 | g5194.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 221 | 242 | - |
| 10 | g5194.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 243 | 304 | - |
| 8 | g5194.t3 | ProSiteProfiles | PS50216 | DHHC domain profile. | 122 | 172 | 24.047 |
| 5 | g5194.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 79 | 101 | - |
| 4 | g5194.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 167 | 189 | - |
| 7 | g5194.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 196 | 215 | - |
| 6 | g5194.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 225 | 247 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5194/g5194.t3; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5194.t3.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016409 | palmitoyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K18932 (palmitoyltransferase)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
