Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable palmitoyltransferase ZDHHC24.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5194 g5194.t5 TTS g5194.t5 7604722 7604722
chr_2 g5194 g5194.t5 isoform g5194.t5 7604825 7605657
chr_2 g5194 g5194.t5 exon g5194.t5.exon1 7604825 7605562
chr_2 g5194 g5194.t5 cds g5194.t5.CDS1 7604825 7605421
chr_2 g5194 g5194.t5 exon g5194.t5.exon2 7605634 7605657
chr_2 g5194 g5194.t5 TSS g5194.t5 7605843 7605843

Sequences

>g5194.t5 Gene=g5194 Length=762
TGTTTTACTATGAACTTCATGTAATATGTTCTTTATCACATTCATGGATTTTCAATTATT
CTGCTAGTCAACTATATACTTGGTACATTCATCGTATTTAACATAATCGCAAATTTGATG
CACATAATTTTAATAGACACAAGTGTTTTTGCTTCTCCTGAAACAATGACAACAACTCGC
TTCAAAAATGATCCATCAGCAAAAGATTGGAGTTTGTGTGAAAAATGCGAAATAATTGTA
CCGCCTCGAAGCTGGCATTGTGATACATGTAATGTCTGCATTCTAAAACGTGATCATCAC
TGTATGTTTGCTGGAAATTGTATTGGCTATAATAATCATCGACATTTTTTGGTGTTTTTA
CTTTACTTCTTTATTGGAACAACTTATGCATTCTTTTATAATTCATACTATTTGTGGATT
GTTAATGGTTCACTTTTTCTTCAATGGATTACACCTTTGAAAATGATTTTTCCTATGTTT
ATGTTCATGTTTAATACATCAAATGAAATTCATCTTTTATTATACATGCTGATCTTAATT
GGAGCAATTTTTACTGGAGTTTTGATGGTTTATCATGGACGTCTTATAGTTAAAAATGCA
ACAGCACATGAGAAAAACAAAGGCGCATATGATCTCGGCCTTAATAAAAATTTGAAGATT
GTTTTTGGCGACAATTGGCTGTCATGCATTTTATGGCCATTTGCAAAGAGCACATTACCT
GAAATTTACTGGAATGCAGCAGAGAGCCAAAAGAGCAAATAA

>g5194.t5 Gene=g5194 Length=198
MTTTRFKNDPSAKDWSLCEKCEIIVPPRSWHCDTCNVCILKRDHHCMFAGNCIGYNNHRH
FLVFLLYFFIGTTYAFFYNSYYLWIVNGSLFLQWITPLKMIFPMFMFMFNTSNEIHLLLY
MLILIGAIFTGVLMVYHGRLIVKNATAHEKNKGAYDLGLNKNLKIVFGDNWLSCILWPFA
KSTLPEIYWNAAESQKSK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g5194.t5 PANTHER PTHR22883 ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 9 165 9.1E-28
3 g5194.t5 PANTHER PTHR22883:SF23 PALMITOYLTRANSFERASE 9 165 9.1E-28
1 g5194.t5 Pfam PF01529 DHHC palmitoyltransferase 15 152 7.3E-30
9 g5194.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 60 -
14 g5194.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 61 85 -
10 g5194.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 86 90 -
13 g5194.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 91 110 -
8 g5194.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 111 116 -
12 g5194.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 117 136 -
11 g5194.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 137 198 -
7 g5194.t5 ProSiteProfiles PS50216 DHHC domain profile. 16 66 24.047
6 g5194.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 63 85 -
4 g5194.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 90 109 -
5 g5194.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 116 138 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5194/g5194.t5; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5194.t5.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016409 palmitoyltransferase activity MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values