Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable palmitoyltransferase ZDHHC24.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5194 g5194.t6 TTS g5194.t6 7604722 7604722
chr_2 g5194 g5194.t6 isoform g5194.t6 7604825 7606322
chr_2 g5194 g5194.t6 exon g5194.t6.exon1 7604825 7605562
chr_2 g5194 g5194.t6 cds g5194.t6.CDS1 7604825 7605562
chr_2 g5194 g5194.t6 exon g5194.t6.exon2 7605638 7606322
chr_2 g5194 g5194.t6 cds g5194.t6.CDS2 7605638 7605739
chr_2 g5194 g5194.t6 TSS g5194.t6 7605843 7605843

Sequences

>g5194.t6 Gene=g5194 Length=1423
ATGCCATCATTATCGAGACTAAACAAGGATTTCATTTCATCATTACTGCTGTCACAAAAT
AAAATTTCGGAAGAAACAGAAACACAGAAATCAAATAATGATATTGAGACTTATGTTGTA
TCTGATGATGAAGATGCAGATGCTTATAATTCAAAATTATCCAAAAGGAAAGCTGTTGAA
GTAGGAGAAAAATTACTAAAAGAACGTATAAGTAAGAATACTGACATAAAAATTGATATC
GAGAGAGACATGAAAAATTTAAAGTTAAATGAATTTGATAACTTTTTCATTACAAAGAAA
TAAATTTGTATGTAAGTATAATTTTAAAACTAAAGTTGAAATAAAGTTTTAGGAAATTTC
AAATAAAATTTTTCATTCAATTGAAACAGGAAGTATTTGGAAAATTTATATGCATGAACG
AAATACATTTTCATATAGCATAACGGTATTTTAAAAATTAAGCAGAGGGGTTGTAAAGGG
ATTCAAGTAGATAGTAACAATATCAATCGCAGCACAATTTTTTTTGTTGCTACTCCTAAA
TTATGCATTAAAGTAGTGAGTCATAAATCAAAAATCATTTAAAATGAAAATCCGTAAATC
AATCATTTCCAATTCAAAGCAAGACATTGCTTGTTCCTTATTTTTATTTTTAATAATTCC
ATCAGTGTTTTACTATGAACTTCATTATGTTCTTTATCACATTCATGGATTTTCAATTAT
TCTGCTAGTCAACTATATACTTGGTACATTCATCGTATTTAACATAATCGCAAATTTGAT
GCACATAATTTTAATAGACACAAGTGTTTTTGCTTCTCCTGAAACAATGACAACAACTCG
CTTCAAAAATGATCCATCAGCAAAAGATTGGAGTTTGTGTGAAAAATGCGAAATAATTGT
ACCGCCTCGAAGCTGGCATTGTGATACATGTAATGTCTGCATTCTAAAACGTGATCATCA
CTGTATGTTTGCTGGAAATTGTATTGGCTATAATAATCATCGACATTTTTTGGTGTTTTT
ACTTTACTTCTTTATTGGAACAACTTATGCATTCTTTTATAATTCATACTATTTGTGGAT
TGTTAATGGTTCACTTTTTCTTCAATGGATTACACCTTTGAAAATGATTTTTCCTATGTT
TATGTTCATGTTTAATACATCAAATGAAATTCATCTTTTATTATACATGCTGATCTTAAT
TGGAGCAATTTTTACTGGAGTTTTGATGGTTTATCATGGACGTCTTATAGTTAAAAATGC
AACAGCACATGAGAAAAACAAAGGCGCATATGATCTCGGCCTTAATAAAAATTTGAAGAT
TGTTTTTGGCGACAATTGGCTGTCATGCATTTTATGGCCATTTGCAAAGAGCACATTACC
TGAAATTTACTGGAATGCAGCAGAGAGCCAAAAGAGCAAATAA

>g5194.t6 Gene=g5194 Length=279
MKIRKSIISNSKQDIACSLFLFLIIPSVFYYELHYVLYHIHGFSIILLVNYILGTFIVFN
IIANLMHIILIDTSVFASPETMTTTRFKNDPSAKDWSLCEKCEIIVPPRSWHCDTCNVCI
LKRDHHCMFAGNCIGYNNHRHFLVFLLYFFIGTTYAFFYNSYYLWIVNGSLFLQWITPLK
MIFPMFMFMFNTSNEIHLLLYMLILIGAIFTGVLMVYHGRLIVKNATAHEKNKGAYDLGL
NKNLKIVFGDNWLSCILWPFAKSTLPEIYWNAAESQKSK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g5194.t6 PANTHER PTHR22883 ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 22 249 1.6E-28
1 g5194.t6 Pfam PF01529 DHHC palmitoyltransferase 96 232 2.1E-30
9 g5194.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
19 g5194.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 31 -
12 g5194.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 32 36 -
16 g5194.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 37 62 -
11 g5194.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 63 141 -
18 g5194.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 142 166 -
13 g5194.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 167 171 -
17 g5194.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 172 191 -
10 g5194.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 192 197 -
15 g5194.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 198 217 -
14 g5194.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 218 279 -
8 g5194.t6 ProSiteProfiles PS50216 DHHC domain profile. 97 147 24.047
5 g5194.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 16 38 -
6 g5194.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 43 65 -
7 g5194.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 144 166 -
4 g5194.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 171 190 -
3 g5194.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 197 219 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5194/g5194.t6; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5194.t6.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016409 palmitoyltransferase activity MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values