General information for g5254.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fatty acid synthase.
Parent gene
- The parent gene g5254 is located on chr_2: 8162571..8163710 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5254 | g5254.t1 | isoform | g5254.t1 | 8156334 | 8163710 |
| chr_2 | g5254 | g5254.t1 | exon | g5254.t1.exon1 | 8156334 | 8157586 |
| chr_2 | g5254 | g5254.t1 | cds | g5254.t1.CDS1 | 8156334 | 8157586 |
| chr_2 | g5254 | g5254.t1 | exon | g5254.t1.exon2 | 8157649 | 8158040 |
| chr_2 | g5254 | g5254.t1 | cds | g5254.t1.CDS2 | 8157649 | 8158040 |
| chr_2 | g5254 | g5254.t1 | exon | g5254.t1.exon3 | 8158095 | 8158438 |
| chr_2 | g5254 | g5254.t1 | cds | g5254.t1.CDS3 | 8158095 | 8158438 |
| chr_2 | g5254 | g5254.t1 | exon | g5254.t1.exon4 | 8158499 | 8162909 |
| chr_2 | g5254 | g5254.t1 | cds | g5254.t1.CDS4 | 8158499 | 8162909 |
| chr_2 | g5254 | g5254.t1 | exon | g5254.t1.exon5 | 8162965 | 8163037 |
| chr_2 | g5254 | g5254.t1 | cds | g5254.t1.CDS5 | 8162965 | 8163037 |
| chr_2 | g5254 | g5254.t1 | exon | g5254.t1.exon6 | 8163109 | 8163239 |
| chr_2 | g5254 | g5254.t1 | cds | g5254.t1.CDS6 | 8163109 | 8163239 |
| chr_2 | g5254 | g5254.t1 | exon | g5254.t1.exon7 | 8163295 | 8163710 |
| chr_2 | g5254 | g5254.t1 | cds | g5254.t1.CDS7 | 8163295 | 8163710 |
| chr_2 | g5254 | g5254.t1 | TSS | g5254.t1 | 8163814 | 8163814 |
| chr_2 | g5254 | g5254.t1 | TTS | g5254.t1 | NA | NA |
Sequences
>g5254.t1 Gene=g5254 Length=7020
ATGTGTGAAAGTGAAGATGATATTGTCATTAGTGGAATTTCTGGGCGATTTCCAAAGTCA
AGAAATGTGCAAGAATTTTGTAAAAATCTTTATGGGAAAGTTGATATGACTTGTGATAAA
GAAGATCGTTGGAAGCATGTTTTTCCTAATGTTCCACCAAGGTTTGGAAAAATTACAGAT
ATTGAGAAGTTTGATGCACCATTTTTTTCAATGCTTAAAAAACATGCTGAATGGACTGAT
CCACAAATGAGAATGCTGCTTGAACACTCGTATGAAGCAATTTTAGATGCTGGAATTAGT
CCACAGTCATTAATGGGTAGTAAAACTGCAGTGCTTGTCGGTGTTGTGAGTTCTGATTCA
AAAGATTATTTTTCTAAAAATATACTGCCGACTTATCATGGTTATCGTGTTGTTGGTCAT
GCACTCTGTTATCTCGCAAATCGAGTTTCTTATTTATTTGGATTGACCGGACCTTCAATG
GTTATCGACACAGCTTGTTCTAGTTCTGCATGTGCTTTAGATATGGCATATTATTATTTA
AAATCAGGAGTTTGTGATGCAGCAATTGTTGGTGGACTTCAATTAAATTTAAATACAACA
ACTTTCACTGAATATACAGGCTTAGGAATTCTTTCACCTGATGGCATCCCTAGACCTTAC
GATGAAGATGCTACAGGATTTACTCGTGCTGAATCAATTTGTTCAGTATTTCTTCAAAAA
AGAAAAGATTCAAAAAGAATTTATGCTCAACTTGTGCATTCTTTATCAAATAATGATGGT
TTTAAAATTGAAGGTCAATCATTGCCATCGAGAGAAATGCAAGTCAAATTAATGGATGAT
TTTTATCAAAAAGTCAATGTTGATATTCGTGATGTGAAATTTATTGAAGCTCATGCAACT
GGCACTAAAAAAGGTGATCCTTTAGAAGTTTCAGCAATTGATGAAGTTTTATGCAAAAAT
CGTGAAGATCCATTGATAATTGGAACTGTGAAGTCGAATATGGGGCATGCTGAAGCCGCC
AGTGGTGTTGTATCAATCACAAAAATTGCGCTTGCATTTGAAAATGATCAATTTCCTCCA
AATATCAACATTACAAAAATGCGAACTGATATCGAAGCATTCAATGAAGGTCGCATTAAA
GTTGCAACTGATTCTTTGCCAATTGATTCTGATTACATTGCTTTCAATTCTTTTGGCTTA
GGTGGCTCAAATGTCCATGCTTTGTTCAAAAGAAATTCAAAAATTAAAGTCAATCATGGT
TTACCAAAAGATTCACTCGAGAGACTTGTGTTGTGGTCAGGAAGAACTGAAGAAGCTTTA
AATACAATTTTTGATGATATCACAAGTCGACCACTCGATGCTGAACATATTGCTTTATTA
CAAAACACACAAATCATGACACCTGATGCAAACAGTTATCGTGGTTTTGGAATTTTTAAG
AAAAATAATTTCGACAATGCAATTTCTGTGCAAAAATCAATGCAGCTTTTCGATGGTATT
CGTCGGCCGATTGTTTTTTGCTATTCTGGGATGGGCACACAATGGCATGGAATGGGACAA
GATTTGATGGAAATTCCTGTCTTTGCTGAATCAATTGAAAAATGTCACAAAATATTGGAA
GAAAAATGCGAAAATTTTGATTTAAAAGGACTTTTGAACTCAAAAGATGAAGAAAGTTTC
AATGACATTCTCAATGCATATCTTGGTATCATTTCTATTGAAATTGCATTGACTGATTTG
TTAAATGCTCTTGGAATCAAACCGACTTTTATAATTGGTCATTCAGTAGGTGAAATTGGT
TGTTCTTATGCTGATGGTTGCTTCACTACTGAAGAAGCTTTGATGATTGCTTTCAAGAGA
GGAAAAATCAACAAGGAAGCAAATATAATTGAAGGTGCAATGGCAGCTGTCGGAATGCAT
TACAAAGAACTTGAAGATTTATTGCCACCAATGATTGATATTGCTTGTCATAACAGTATT
CAATCGACAACTATCAGTGGACCTAAAGATGCTGTTGAAGAGTTTGTTGCTAAACTTAAG
AAAGACGGAATTTTTGCCAACACAATTGCTTGTGCAGGAATTCCATTTCATAGTCGATAC
ATCTCAAAGGTTGGTCAAGAAATGAGCAAAAGTTTTGAAGAATGTATAAAACAACCAAAA
TTGCGCTCATCAAAATGGATCAGTTCCACTTATTCTGAAGATCAATGGATGGAAAATGAA
GCAAAATTTTGTGGTGCACAATATCAAGCTAAGAATGCTCTTAATCCTGTTTTATTTGAA
GAAGCAGCAACAAAACTTCCCAAGAATGCAATTGTCATTGAAGTTTCATCAAATGGAATT
TTGAAATCAATCATGAAGTCACTTCTGAGCAATTGCAGTTATGTTAGACTTTCAACAAAA
CACAAACCAGGAAAGCTCTCTATTTTGGAAACACTTGGAAATCTTTTTCAATTTGGTGTT
GACATGAATGTTGCTGCAATTTATCCCGCAATCAAATTTCCAGTTTCACGTGGTACACCA
ATGATTTCACCAAAAATTAAATGGAATCACAGTGAAAATCATTTTGTGGCTTATTTTGAT
GCAAAATATGAACTTGAAAGATTTTCAATGATTCTCAATTTTGATTCTGAAGAATTTTCA
TTCTTAAAAGATCACGTAATTGATGGGAAAATGATCATACCTGGTGCATTTTACATTTAT
ATAATTTGGAAATTATTTGCCCTAATGAACAGCACAGACTTGAATAAAATGAAAATTACA
ATCAAAGATATTGAATTGGCTCGAATGACTCGAGTTCTTTCAAATGAAGAAGTGATAATT
ACAATTTCAGTTCATCGTGGAACAGGAAATTTTGAAATTAGTGAAGGCAATATGATGGTT
GTAAAAGGAAAAATCTTTCGTGATGATGATCTTGTTATTAAGAGAGTTGTCCCAACAAAA
CTAAGTCCTGATATTTTGATTTTACCAAAAGAAGATTTTTATCGTTATGGTCGAAGTCGA
GGTTATCAATTTGGTGAATCATTTCATGATGTTAAAAGTGTGGTTTATGATGGAAGTGAA
GCTAAAATTATTTGGAGAAATAATTGGACAACTTTTATTGATGCAACACTTCAGCCATTG
GCATTGAATGATGACAGCATGGAAGTTGCAGTACCATTTAAAATTGATGAAATCTCAATT
GATCCAATAATGCATTTAAAAATGGCAAAAGAACAAGAGCAAAATGAGGAAATAATTTTT
GATTATCAAATCTGTAAAGGTTCAGACAAAACAACATGTGGTGGAATAAGAATGAAAAGA
TTTAAAGGAATAAGAATTGCTAGACAATCACAAAAGAAGCCAGTATTTGAAAGTCAAAAG
TTTGTGCCTTTTGTATCAGACATACCTCAGTCATTTGGTCAAAATGATGTATTAAAAATT
TTCCTTACTCACTTCAGTGAAAGCAACATTAAACACACATATTCAATTGTTGAAATCAAT
GAAAAACAATCAGACCATGTACTTGTACATTTATCAAAAGTTCTTGATGAATTTCTTATG
AAATTTGATTTAAAACTTTTGACTTCAACTGAGATGGAAATTGAAAATATTCAAGTAACT
TCAGATAACGATTTAAAAAAGTTCATAAGAAACAACAGAAATGCAGACATTGTGATCAAA
GATAATTGCGTAAATGATTATGAATTTCTTCGAATAGCAAAAGAAAATTTCAATGATGAC
ATTGTGTATATTTCAAGAGAAGTTTCAGACCAAAACATCAATAAAGAAGAAATTTCAGTG
ATTTCAAAAATAAATTTACAAAATGACAAAAGTTTCATCATGTTTAAAAACAAATCAACT
CAAAAAGAAGAATCAAAATCTTATAAATGCATTGAAATCACAAAAAAAACTTCTGAATGG
CTCAATAAATTGCAAAAAATCGCTCAAGATGAAGAAAGCAAAGAACAGGTGATAATTTAT
TCACAAAATTTACAATCTGGCTTGCTCGGCTTTTACAATTGCTTAAGATTTGAATTTCCA
ATGAACAAAAAAATCACTTGTGTTCTAATTGATGACAATGATGCACCCAAATTTGACCCA
ACAAATTTATTTTATGCAAAACAATTAGAGAAAGGTTTTGCTGTAAATATTTTTAGAGAA
GGAACTTGGGGAGCTCAAAGACATATCAATATCATACCAGATACAAGTCTCACACCACAA
ACTGGTCACTGCTTTGCTAATTATAGCAAAAAAGGACAATTATCAAGTTTGAAATGGCGA
GAAGGAAAATTGAATCAAAAACTTGATAAAAAAGAAAATTTGATTGCAATTCATTACAGT
TCATTAAATTTCAAAGATGTTCTTTATGCTCATGGTTATATCAGTGATGACACAAGTCTC
ACTAAAGAATGTGCAATTGGATTTGAATTTTCTGGTATTCATTTAGGCACAGGAGAGAGG
GTGATGGGTTTGTCAAATAAAACTGGATGCATTTCAACTTTGTATGACCCTTCTGATGCT
TCTATATTAATACCGATTCCTGATCATTGGACATTAGAAGAAGCAGCAACAATTCCATCA
GTTTATATCACTGTTTATTACTCATTCTTTCAAGCTACGAAAATCAAAAAAGGAAAATCA
ATTCTCATCCATTCAGGCTCTGGTGGTGTCGGTCAAGCTGCTTTGAATGTTGCTTTTGCT
TATGGCTTAGAAGTTTTTACAACTGTTGGTAGTGAAGAGAAGAAAAATTTCTTACTAAAA
AATTATCCAAAATTGAAGTCAGAAAATATTGGAAATTCTCGTGACACAACATTCATAGAT
ATGATTATGGAAAGAACAAATGAAAAAGGTGTCGATTATGTCTTAAATTCACTCAGTGAT
GACAAAATGATTGAATCAATTAATTGTTTGAAAAAAGGTGGAGTCTTTTTAGAAATTGGA
AGAGCAGATATTTTAAAAGGTACAACTATCAACCTTGATTTCTTAGGCAATGACATTGAA
ATGAAGTCAATTCGAATCGATCATCTTCAACAAAAAGAAGGCAGTTTAAGCGAAATTATA
AAAATTTTAAAACATGATATGAAAGCTGGAATAATTAAACCAATAAACTACACAATTTTT
GAAGCATCTGAAATTGTGAAAGCTTTTCAATTCATGGCATCAGGCCATCATATTGGAAAA
GTTCTAATTAAAATTCGTGATGACAACACTCAGTCATTGCCATTGAATGTAAAACCAAGA
TTTTATTGCAAATCAGAGTGTTCTTATATCATTTGCGGCGGATTAGGTGGTTTAGGTTTG
GAATTTTCACAATGGCTAGTCAGTCGAGGATGCAGAAAATTAGTTCTAAGTTCAAGTCGA
GGAATTTCAAATCAATATCAAGCTTATAAAATTCAATTATGGAAAAAGTATGGAGTTGAA
GTGATCATAAGTACAGCTAATATTGCAACACTCGAAGGATGTCTAAAACTCATCAATGAA
GCACAAACTCTTGGTCCAGTCGATACAATTTTCAATTTTGCTGCTGTTCTTCAAGATGGA
ATTTTTACAAATCAAACAGAAAAAATGTTCAAAAAATCATTAGAACCAAAAGCTGTGGCT
ACAAAATATTTGCATGAAGCATCTCTTGATCTGTGTCCAAATCTTCAACACTTTGTAGTA
TTCTCAAGTATTTCATGCGGTCGTGGTAAAGGAGGTCAAACAAATTATGGAATGGCAAAT
TCAATTATGGAAGAAATTGTTCAAATGAGGCACAACATGAAACTACCAGCGAAAGCTATT
CAATGGGGACCAATTTCTGAAGTTGGGATGCTGTCAGAAGGAGAAACTCCTATTTTAATG
GTTGGTTATCAATCTTTATTGTCAGTCCTTGAATCTCTCGATATACTTTTATTACATCCT
GATCCAATTGTGGCTAGTACAGTTTTCCTTGATAAAAACATTCAATCTGATGAAAAATTA
GGTTTAATTGATATGCTTATGAAATTGCTAAATATTGAAGACAGAAAAACAATTTCAATG
AATTCAACTTTTTCACAACTTGGCATTGATTCTTTAGCTGGTGTTGAAATGCAGCAATTG
ATTGAACGAGAATATGGTGTGACATTATCAGCAAAAGAACTTCGAACTTTATCGCTTGCT
GAACTTGAAATGAGAGTAACCTCAGGAAAAGAAGTTTCTAAAAAAGATGGTGTTAAAATA
AACAAAGAATTATCATTGGCTAGATTATTTTTCGAATATTATCGAGTTGAAGATTTGCTA
GGTTTTGTCACATCAACTTCATTGTTCATGAAAGCAAATAATATCGTGAGAAATGATGGT
CGAAAAATTTTATTTGTGCCAGGCATTGAAGGTGTGACTTATCAGCAACTTGACAAAATT
GCAGCTAATCTAAAACTACCAATGTATGTCATGCAATATTTTCTGATCAAACATGAACCA
GAATTAGAAGATTTATGTGAAAAAATTATTCCATCCGTTATTGAGTTCTTCAATAATTCA
CCAGATTTTATTTTGGTTTGTTATTCATTTGGAACTTTATTGGGATTGAAACTTGCAAAA
GCTTTAGAAAATACAGGAAAATCAGGGCAATTGATTGAAATTGATGGATCACCTCAAGTC
ATTTACCATTATTCGATTAGTCTGAATCCTGAAAGAAGTGAGAAAAAGAACCATGAAGTT
TTGCTTAAAACATTTAAGCAATATTTTCAAGTTGAAAATGATGACAATATTGATAGTATT
CCAAAACTTATGGATGCTGCATTTCCTAATCATAATGATAATTATAAAATATTTTTCGAG
TTCTTATTGAATCGTTTGAAAATGTTGTTCACACTCAATGAAGTCAATTTTGAAGCACTT
GAAAGGACGAAAATAACGTTGATTCGAGCAACTGAAAGTGAAATAACTGGAATTTATAAC
GATTTTGGTTTGACAAAATATAGCAAAGAATCTGTTGACATTAAGACAATGAAAGGAGAT
CATATTTCTTTAATTAGTAAGCCAGAGTTAATTGATGTTATTAAAGAAGTTATAGTGTAG
>g5254.t1 Gene=g5254 Length=2339
MCESEDDIVISGISGRFPKSRNVQEFCKNLYGKVDMTCDKEDRWKHVFPNVPPRFGKITD
IEKFDAPFFSMLKKHAEWTDPQMRMLLEHSYEAILDAGISPQSLMGSKTAVLVGVVSSDS
KDYFSKNILPTYHGYRVVGHALCYLANRVSYLFGLTGPSMVIDTACSSSACALDMAYYYL
KSGVCDAAIVGGLQLNLNTTTFTEYTGLGILSPDGIPRPYDEDATGFTRAESICSVFLQK
RKDSKRIYAQLVHSLSNNDGFKIEGQSLPSREMQVKLMDDFYQKVNVDIRDVKFIEAHAT
GTKKGDPLEVSAIDEVLCKNREDPLIIGTVKSNMGHAEAASGVVSITKIALAFENDQFPP
NINITKMRTDIEAFNEGRIKVATDSLPIDSDYIAFNSFGLGGSNVHALFKRNSKIKVNHG
LPKDSLERLVLWSGRTEEALNTIFDDITSRPLDAEHIALLQNTQIMTPDANSYRGFGIFK
KNNFDNAISVQKSMQLFDGIRRPIVFCYSGMGTQWHGMGQDLMEIPVFAESIEKCHKILE
EKCENFDLKGLLNSKDEESFNDILNAYLGIISIEIALTDLLNALGIKPTFIIGHSVGEIG
CSYADGCFTTEEALMIAFKRGKINKEANIIEGAMAAVGMHYKELEDLLPPMIDIACHNSI
QSTTISGPKDAVEEFVAKLKKDGIFANTIACAGIPFHSRYISKVGQEMSKSFEECIKQPK
LRSSKWISSTYSEDQWMENEAKFCGAQYQAKNALNPVLFEEAATKLPKNAIVIEVSSNGI
LKSIMKSLLSNCSYVRLSTKHKPGKLSILETLGNLFQFGVDMNVAAIYPAIKFPVSRGTP
MISPKIKWNHSENHFVAYFDAKYELERFSMILNFDSEEFSFLKDHVIDGKMIIPGAFYIY
IIWKLFALMNSTDLNKMKITIKDIELARMTRVLSNEEVIITISVHRGTGNFEISEGNMMV
VKGKIFRDDDLVIKRVVPTKLSPDILILPKEDFYRYGRSRGYQFGESFHDVKSVVYDGSE
AKIIWRNNWTTFIDATLQPLALNDDSMEVAVPFKIDEISIDPIMHLKMAKEQEQNEEIIF
DYQICKGSDKTTCGGIRMKRFKGIRIARQSQKKPVFESQKFVPFVSDIPQSFGQNDVLKI
FLTHFSESNIKHTYSIVEINEKQSDHVLVHLSKVLDEFLMKFDLKLLTSTEMEIENIQVT
SDNDLKKFIRNNRNADIVIKDNCVNDYEFLRIAKENFNDDIVYISREVSDQNINKEEISV
ISKINLQNDKSFIMFKNKSTQKEESKSYKCIEITKKTSEWLNKLQKIAQDEESKEQVIIY
SQNLQSGLLGFYNCLRFEFPMNKKITCVLIDDNDAPKFDPTNLFYAKQLEKGFAVNIFRE
GTWGAQRHINIIPDTSLTPQTGHCFANYSKKGQLSSLKWREGKLNQKLDKKENLIAIHYS
SLNFKDVLYAHGYISDDTSLTKECAIGFEFSGIHLGTGERVMGLSNKTGCISTLYDPSDA
SILIPIPDHWTLEEAATIPSVYITVYYSFFQATKIKKGKSILIHSGSGGVGQAALNVAFA
YGLEVFTTVGSEEKKNFLLKNYPKLKSENIGNSRDTTFIDMIMERTNEKGVDYVLNSLSD
DKMIESINCLKKGGVFLEIGRADILKGTTINLDFLGNDIEMKSIRIDHLQQKEGSLSEII
KILKHDMKAGIIKPINYTIFEASEIVKAFQFMASGHHIGKVLIKIRDDNTQSLPLNVKPR
FYCKSECSYIICGGLGGLGLEFSQWLVSRGCRKLVLSSSRGISNQYQAYKIQLWKKYGVE
VIISTANIATLEGCLKLINEAQTLGPVDTIFNFAAVLQDGIFTNQTEKMFKKSLEPKAVA
TKYLHEASLDLCPNLQHFVVFSSISCGRGKGGQTNYGMANSIMEEIVQMRHNMKLPAKAI
QWGPISEVGMLSEGETPILMVGYQSLLSVLESLDILLLHPDPIVASTVFLDKNIQSDEKL
GLIDMLMKLLNIEDRKTISMNSTFSQLGIDSLAGVEMQQLIEREYGVTLSAKELRTLSLA
ELEMRVTSGKEVSKKDGVKINKELSLARLFFEYYRVEDLLGFVTSTSLFMKANNIVRNDG
RKILFVPGIEGVTYQQLDKIAANLKLPMYVMQYFLIKHEPELEDLCEKIIPSVIEFFNNS
PDFILVCYSFGTLLGLKLAKALENTGKSGQLIEIDGSPQVIYHYSISLNPERSEKKNHEV
LLKTFKQYFQVENDDNIDSIPKLMDAAFPNHNDNYKIFFEFLLNRLKMLFTLNEVNFEAL
ERTKITLIRATESEITGIYNDFGLTKYSKESVDIKTMKGDHISLISKPELIDVIKEVIV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 28 | g5254.t1 | CDD | cd00833 | PKS | 6 | 408 | 3.90449E-128 |
| 29 | g5254.t1 | CDD | cd05195 | enoyl_red | 1432 | 1723 | 9.70511E-93 |
| 20 | g5254.t1 | Gene3D | G3DSA:3.40.47.10 | - | 5 | 411 | 3.9E-124 |
| 25 | g5254.t1 | Gene3D | G3DSA:3.30.70.3290 | - | 426 | 854 | 2.2E-152 |
| 23 | g5254.t1 | Gene3D | G3DSA:3.40.366.10 | - | 500 | 819 | 2.2E-152 |
| 26 | g5254.t1 | Gene3D | G3DSA:3.10.129.110 | - | 868 | 1112 | 7.4E-52 |
| 19 | g5254.t1 | Gene3D | G3DSA:3.40.50.720 | - | 1296 | 1968 | 6.4E-240 |
| 22 | g5254.t1 | Gene3D | G3DSA:3.90.180.10 | - | 1393 | 1741 | 6.4E-240 |
| 21 | g5254.t1 | Gene3D | G3DSA:1.10.1200.10 | - | 1974 | 2059 | 5.2E-14 |
| 24 | g5254.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 2101 | 2329 | 1.6E-24 |
| 27 | g5254.t1 | Gene3D | G3DSA:1.10.1470.20 | Fatty acid synthase; domain 2 | 2201 | 2272 | 1.6E-24 |
| 9 | g5254.t1 | PANTHER | PTHR43775 | FATTY ACID SYNTHASE | 5 | 2337 | 0.0 |
| 10 | g5254.t1 | PANTHER | PTHR43775:SF23 | FATTY ACID SYNTHASE 3 | 5 | 2337 | 0.0 |
| 4 | g5254.t1 | Pfam | PF00109 | Beta-ketoacyl synthase, N-terminal domain | 6 | 243 | 1.1E-53 |
| 1 | g5254.t1 | Pfam | PF02801 | Beta-ketoacyl synthase, C-terminal domain | 248 | 364 | 5.7E-31 |
| 8 | g5254.t1 | Pfam | PF16197 | Ketoacyl-synthetase C-terminal extension | 369 | 478 | 4.0E-24 |
| 7 | g5254.t1 | Pfam | PF00698 | Acyl transferase domain | 505 | 787 | 1.5E-57 |
| 3 | g5254.t1 | Pfam | PF14765 | Polyketide synthase dehydratase | 874 | 1092 | 7.1E-16 |
| 5 | g5254.t1 | Pfam | PF00107 | Zinc-binding dehydrogenase | 1549 | 1651 | 2.1E-11 |
| 2 | g5254.t1 | Pfam | PF08659 | KR domain | 1748 | 1926 | 2.4E-40 |
| 6 | g5254.t1 | Pfam | PF00550 | Phosphopantetheine attachment site | 1982 | 2036 | 2.1E-6 |
| 30 | g5254.t1 | ProSitePatterns | PS00606 | Beta-ketoacyl synthases active site. | 157 | 173 | - |
| 36 | g5254.t1 | ProSiteProfiles | PS50075 | Carrier protein (CP) domain profile. | 1976 | 2053 | 11.389 |
| 34 | g5254.t1 | SMART | SM00825 | Beta-ketoacyl synthase | 8 | 412 | 3.6E-85 |
| 32 | g5254.t1 | SMART | SM00827 | Acyl transferase domain in polyketide synthase (PKS) enzymes. | 507 | 802 | 3.2E-29 |
| 31 | g5254.t1 | SMART | SM00829 | PKS_ER_names_mod | 1412 | 1723 | 8.0E-97 |
| 35 | g5254.t1 | SMART | SM00822 | This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. | 1747 | 1928 | 2.6E-19 |
| 33 | g5254.t1 | SMART | SM00823 | Phosphopantetheine attachment site | 1979 | 2037 | 7.9E-4 |
| 13 | g5254.t1 | SUPERFAMILY | SSF53901 | Thiolase-like | 4 | 410 | 4.68E-62 |
| 12 | g5254.t1 | SUPERFAMILY | SSF52151 | FabD/lysophospholipase-like | 504 | 799 | 2.88E-38 |
| 18 | g5254.t1 | SUPERFAMILY | SSF55048 | Probable ACP-binding domain of malonyl-CoA ACP transacylase | 631 | 687 | 2.22E-9 |
| 16 | g5254.t1 | SUPERFAMILY | SSF50129 | GroES-like | 1408 | 1537 | 1.41E-14 |
| 15 | g5254.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1510 | 1662 | 6.16E-32 |
| 14 | g5254.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1748 | 1950 | 2.17E-29 |
| 17 | g5254.t1 | SUPERFAMILY | SSF47336 | ACP-like | 1982 | 2042 | 9.55E-9 |
| 11 | g5254.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 2097 | 2336 | 9.02E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5254/g5254.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5254.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0031177 | phosphopantetheine binding | MF |
| GO:0016746 | acyltransferase activity | MF |
| GO:0055114 | NA | NA |
| GO:0004315 | 3-oxoacyl-[acyl-carrier-protein] synthase activity | MF |
| GO:0006633 | fatty acid biosynthetic process | BP |
| GO:0016740 | transferase activity | MF |
| GO:0004312 | fatty acid synthase activity | MF |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed