General information for g5256.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Roundabout homolog 2.
Parent gene
- The parent gene g5256 is located on chr_2: 8179610..8226881 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5256 | g5256.t2 | isoform | g5256.t2 | 8179610 | 8226881 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon1 | 8179610 | 8180354 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS1 | 8179610 | 8180354 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon2 | 8181388 | 8181648 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS2 | 8181388 | 8181648 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon3 | 8181713 | 8181890 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS3 | 8181713 | 8181890 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon4 | 8182024 | 8182470 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS4 | 8182024 | 8182470 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon5 | 8184732 | 8184957 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS5 | 8184732 | 8184957 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon6 | 8185023 | 8185297 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS6 | 8185023 | 8185297 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon7 | 8185380 | 8185578 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS7 | 8185380 | 8185578 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon8 | 8185658 | 8185750 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS8 | 8185658 | 8185750 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon9 | 8191314 | 8191484 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS9 | 8191314 | 8191484 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon10 | 8192907 | 8193149 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS10 | 8192907 | 8193149 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon11 | 8193228 | 8193310 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS11 | 8193228 | 8193310 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon12 | 8198917 | 8199118 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS12 | 8198917 | 8199118 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon13 | 8201018 | 8201295 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS13 | 8201018 | 8201295 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon14 | 8204103 | 8204233 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS14 | 8204103 | 8204233 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon15 | 8205382 | 8205520 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS15 | 8205382 | 8205520 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon16 | 8215696 | 8215750 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS16 | 8215696 | 8215750 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon17 | 8215941 | 8216026 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS17 | 8215941 | 8216026 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon18 | 8220776 | 8220953 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS18 | 8220776 | 8220953 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon19 | 8221020 | 8221138 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS19 | 8221020 | 8221138 |
| chr_2 | g5256 | g5256.t2 | exon | g5256.t2.exon20 | 8226545 | 8226881 |
| chr_2 | g5256 | g5256.t2 | cds | g5256.t2.CDS20 | 8226545 | 8226881 |
| chr_2 | g5256 | g5256.t2 | TSS | g5256.t2 | NA | NA |
| chr_2 | g5256 | g5256.t2 | TTS | g5256.t2 | NA | NA |
Sequences
>g5256.t2 Gene=g5256 Length=4446
ATGTTCTTTTTCATTTTTTTCATTACAGCACAATTCAGATCACCTCGAATCACTGAGCAT
CCGAGTGATATTCTAGTCGCTAAAAATGAGCCTGTGACGCTTAACTGCAAAGCAGAAGGT
CGACCTGATCCAGTCATTGAATGGTTCAAAGATGGTGAACCCGTAAAAACTAGTTCAGTT
GACAGCAAGTCACATCGTGTGCAATTGCCAACTGGTTCATTATTTTTCCTTCGTACAGTG
CATAGCAAGAAGGAACAGGATGGTGGCGTATACTGGTGTGTTGCCAAAAATTCTGCTGGA
AAGAGTGCAAGTCGTAATGCAACATTGCAGATAGCGGTGTTGCGCGATGATTTTCGTATT
GAGCCAAAAGATACTCGTGTAGCAGCAGGTGAAACCGCATTGCTTGAATGTGGACCACCT
AAAGGCAATCCCGAGCCAAAAGTTGAATGGAAAAAAGATGGCGTGTGGATTGATTTGGAT
GATGTTAGAAGCCGCAATAATCGACTAAGAATAGTTGATGGTGGCAATTTATTAATAAAT
AACGTGCAAACTATCGATGAAGGCAAATATCAATGTGTAGCTTCAAACATGGTGGCGAGC
AAGGAAAGTGCTCAAGCTAAATTGACTGTTCAAGATACTCGTGTAGCAGCAGGTGAAACC
GCATTGCTTGAATGTGGACCACCTAAAGGCAATCCCGAGCCAAAAGTTGAATGGAAAAAA
CTTCAAACATTGGTGGCGAGCAAGGAAAGTGCTCAAGCTAAATTGACTGTTCAAGTTAAA
CCGACATTTATCAAAGAGCCATCAAATGCGAGCGTCTTAGCAGGCCAAACAGTTCAATTA
TATTGCTCAGTGACTGGCGATCCTCAACCACAAATTTATTGGCGCAAGGAAAATGGAAAT
ATTCCACATGGAAGAGCTGAAATTTTGGACGGTGATAAAAGTTTAGTTATAAAGGGCGTT
ATTGCTAGCGATGAAGGAACATACATTTGTGAAGCGCACAATAGTGTCGGTCAAATCAGC
TCTAAAGCTCAATTAATTGTTAATTCACTGCCAGTGTTCGATACAAAACCACAAGATGTG
AAGACAGGGATAAATGGTGTGGCGAAATTTGAGTGTGTTGCATCTGGTAATCCTCAACCA
TCGGTTTATTGGACAAAAGAAGGCTCACAGGAGCTCATGTTTCCTGATAACACCTATGGA
CGTCATCATGTTACACTCGAGGGTGTGCTTGAAATTAAGGGCGTTAGAAAAGAGGACGCT
GGATATTATGTATGTTCGGCATTCAGTGTTGCCGGATCAGGTTCAACTAGGGCGTTTTTA
GAGGTTAATTCAGTTGATGATATTCCACCACCAATTATAAAAATTGGGCCAACAAATCAG
ACCCTACCGAAGGGGAGTGTTGCAACATTATTATGCCGCGCTGCTGGCAATCCAACACCT
GAAATTAAATGGTCAAAAGACGGAGCACCATTGCATATGAAAAAACGCTTTGAAGTTATT
CAAAGTGGAACATTAAAAATTGACGATTTACATTTAGAAGATACTGGCATATACACATGT
ACAGCCACATCAGAGAGTGGTGAAACATCATGGAGCGCTTCGCTCATGGTCGAAAAAAGC
TCCACAAGCACTTTGCATCGTGCACCTGATATTAGTATGCTACCGACATCGCCAAGTGAA
CCGAAACTAGTAAATGTGACAGCTACGAGCGTAACACTGTCGTGGAATAAAGTGCAATCG
AAGCAGAGCGGTACGACAGCTTTTATCGGATATTTTGTCGAGTATTTTAGTTCCGATTTG
CAAACTGGCTGGATAACAGCAGCACAAAGAGTGCCCAGCAATGTTGTCACGATTACCGAC
CTCAAGCCCGGCACATCATACATCTTTCTAGTTCGTGCAGAGAATTCATATGGACTCTCG
GAGCCATCGCCTGTGTCGAGTGTCGTCAAAACACTCGGAACAGACAAAAGCATTGTGCCA
CCAAACGAACTTGCAGCAGCTCGTAACATACTTAGTGGAAAGGTTCTGGAATTGACAGAT
GCTTTGGCAGTTAATTCAACAGCAGTACGGCTCGAATGGCATCTTTTATTGAGCAATACA
GAAGATTACATTGAGGGTTTGCTCATAAGATATCGTGAATTGCATAGTGGAACACAAAAA
TTCAATTCTGTCATTGTGACAGAGCCTGATTTGGAAGTCTACGATGTCGGCAGTCTCAGC
AAGTTCACAAAGTATGAATTTTTCATTTCACCATTTTACCGGACAGTTGAGGGCATGCCG
AGTAATTCTAAAATTGTACAAACATTGGAGGATGTTCCTACAGCTCCTCCATCAAATGTG
CAAGTGGGCATGCTGAATTTAACATCAGGCGTTGTCCGTTGGAATCCTCCGCCTCAACAA
GATCACAATGGCATTTTGCTTGGTTATAAAATTCAAGTTAAAGCCGGCAATTCGACAAAA
ATTCTTGCACAAATGACTTTAAATGCGACAACGTTATCGGTTGGACTGCATAATTTGACA
ACAGGTGCCACTTATAATGTTCGTGTTGTTGCATATACTAGAGTTGGCGCTGGGCCATAT
TCCAAATCGGTGGCTCTAATTATGGATCCATCATTTTTGGTGTCTGCACCTCGTGCACAT
CCAAGTGGTATTTCAACGGGTGACACATATCAAAATGATAGTATAATTCATCAACCATGG
TTTATGGCTGTCATTGCCATTGTTCTCGTCATGTTTCTTGTCTCGACTGCATTTACATTG
CGCTTCCTATACCGACGTAGGAAAAATTTATCAAAGGGACTTCAACATTTGAGTGCAGTT
CCTACAGCCGTAAATGGTGGCGACGTGATGATGAATATTAATGGCAAAGAGAGTCTATGG
ATTGACTTTAAGTCATCAATTGGGCCCATACAAAATCGTGGTTGGCGTACAGGTGATATG
GACAAGGACTCTGGTTTGAGTGGCATGAAATTACTTGAAAATTCACAATTGGGCTCTACA
CAAGGCACTTATACCGATTGCGGTACTGACTATGCAGAAGTTGATCCCCGAAACATGAGC
AGCTTCTACAATTGTCGAAAATCGCCAGACAATCCAACGCCCTATGCCACAACGATGCTA
ATTAATTCAATGCCAACGGAAATGTGTACAAATCCATCACATTCACATTCTGAGCACGAA
ATCGGAGCAGGCGGATCATCAGGCACGTCGAGTTTACATTCCGATGGCAAATACTGCATG
CATTCAAAGCATTACAATCCAGCACCAACAAATTGGATTGATTTTCTTCCACCGCCGCCA
ATGGGTCCACCACCAATTCCTGAAATGTCTTCAGATTATGGTTCCGATCCGTTCACAGCA
AGTCTCATTCCAAACTGCAAAAAATCATCGTTGAGCTCCCGCAGTGGCTCTGGACTGTCA
GCAAGACAGCAAGCACAAAACATGAACATATCACAAGGGTCCGAATATAACTACAATCAT
GCGACATCATCAAGTAAAAATTCTTCAAATGGCATGCCACCTTTTGCAAATCGACCACTT
CCATTTCTATGTCACGAATCAGCAATGAATCAACAGCAAGCGTACAATCATATGATGAAT
AACGCTAACTCGTGCTGCCCTCAGCCACAACAACAATCGATGATGAATGAACATATCTAT
AATGAATATGAACCATATCAGCAAAGAAAATTTAATTCCAGATTATGCGATAGCTATGAT
GCCCTGCCAAATTGTTCCAATTCAAAGCAGACGACACCAACAACTCTTCACAATCCGACA
AGTTTTGGGTCACTCAACGATAACTCGATTTACAAGTGCTCATCGGATTGCTACTCAATG
GAACGACAGCCACCACGTCATAATCATCATACTCATTCGCATTTCAATAATAATAACAGC
AACAGTAGCAACAACAATAAAAGAAAACAAAAGACTAAACATCATCATAGAAATAACAAC
AATCAAAAGCAGCAACATTCACCACAAGATGCAGTTCCTTCTCCCTATGCTCATCAAACA
ATTGTCACTACGCCTGATCAAAGTCATGCAAATTATGAATATATCATAGATAATTCATCA
CATGGTGATGATGATGAAAATTCATGCAATTTAGGCAAAGTGACGATCTCAGAAAATGAA
GAAACAACTGAGCATGATGATGATGATATTGGCAATAGTTACTCATGTGATGACACTTTG
ACTGATGATGCTATTTTATCAACAGGCAATGATGGTGGACAAATGAAAAACAAGTCAAAT
GGTCATGGATTTAAGCACAATCATAATCATCATTGTGAGCAGACAAGTCGTGATAGTGGA
AGTGGTGGCGAAACATGCTGTTCATGTAGTGACACGTCTTGTGTCTATGAAGAACCACCG
AGTCATCTACCACCAACATCAACTGTTCAAGCAAATCAAGCACTGAGAATTGGCGATGAA
AATTAA
>g5256.t2 Gene=g5256 Length=1481
MFFFIFFITAQFRSPRITEHPSDILVAKNEPVTLNCKAEGRPDPVIEWFKDGEPVKTSSV
DSKSHRVQLPTGSLFFLRTVHSKKEQDGGVYWCVAKNSAGKSASRNATLQIAVLRDDFRI
EPKDTRVAAGETALLECGPPKGNPEPKVEWKKDGVWIDLDDVRSRNNRLRIVDGGNLLIN
NVQTIDEGKYQCVASNMVASKESAQAKLTVQDTRVAAGETALLECGPPKGNPEPKVEWKK
LQTLVASKESAQAKLTVQVKPTFIKEPSNASVLAGQTVQLYCSVTGDPQPQIYWRKENGN
IPHGRAEILDGDKSLVIKGVIASDEGTYICEAHNSVGQISSKAQLIVNSLPVFDTKPQDV
KTGINGVAKFECVASGNPQPSVYWTKEGSQELMFPDNTYGRHHVTLEGVLEIKGVRKEDA
GYYVCSAFSVAGSGSTRAFLEVNSVDDIPPPIIKIGPTNQTLPKGSVATLLCRAAGNPTP
EIKWSKDGAPLHMKKRFEVIQSGTLKIDDLHLEDTGIYTCTATSESGETSWSASLMVEKS
STSTLHRAPDISMLPTSPSEPKLVNVTATSVTLSWNKVQSKQSGTTAFIGYFVEYFSSDL
QTGWITAAQRVPSNVVTITDLKPGTSYIFLVRAENSYGLSEPSPVSSVVKTLGTDKSIVP
PNELAAARNILSGKVLELTDALAVNSTAVRLEWHLLLSNTEDYIEGLLIRYRELHSGTQK
FNSVIVTEPDLEVYDVGSLSKFTKYEFFISPFYRTVEGMPSNSKIVQTLEDVPTAPPSNV
QVGMLNLTSGVVRWNPPPQQDHNGILLGYKIQVKAGNSTKILAQMTLNATTLSVGLHNLT
TGATYNVRVVAYTRVGAGPYSKSVALIMDPSFLVSAPRAHPSGISTGDTYQNDSIIHQPW
FMAVIAIVLVMFLVSTAFTLRFLYRRRKNLSKGLQHLSAVPTAVNGGDVMMNINGKESLW
IDFKSSIGPIQNRGWRTGDMDKDSGLSGMKLLENSQLGSTQGTYTDCGTDYAEVDPRNMS
SFYNCRKSPDNPTPYATTMLINSMPTEMCTNPSHSHSEHEIGAGGSSGTSSLHSDGKYCM
HSKHYNPAPTNWIDFLPPPPMGPPPIPEMSSDYGSDPFTASLIPNCKKSSLSSRSGSGLS
ARQQAQNMNISQGSEYNYNHATSSSKNSSNGMPPFANRPLPFLCHESAMNQQQAYNHMMN
NANSCCPQPQQQSMMNEHIYNEYEPYQQRKFNSRLCDSYDALPNCSNSKQTTPTTLHNPT
SFGSLNDNSIYKCSSDCYSMERQPPRHNHHTHSHFNNNNSNSSNNNKRKQKTKHHHRNNN
NQKQQHSPQDAVPSPYAHQTIVTTPDQSHANYEYIIDNSSHGDDDENSCNLGKVTISENE
ETTEHDDDDIGNSYSCDDTLTDDAILSTGNDGGQMKNKSNGHGFKHNHNHHCEQTSRDSG
SGGETCCSCSDTSCVYEEPPSHLPPTSTVQANQALRIGDEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 32 | g5256.t2 | CDD | cd00096 | Ig | 468 | 534 | 6.5425E-16 |
| 35 | g5256.t2 | CDD | cd00063 | FN3 | 555 | 649 | 1.47607E-18 |
| 33 | g5256.t2 | CDD | cd00063 | FN3 | 683 | 768 | 1.15642E-4 |
| 34 | g5256.t2 | CDD | cd00063 | FN3 | 776 | 864 | 2.57209E-14 |
| 26 | g5256.t2 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 11 | 113 | 1.2E-29 |
| 21 | g5256.t2 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 114 | 211 | 4.2E-24 |
| 25 | g5256.t2 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 251 | 349 | 4.1E-26 |
| 23 | g5256.t2 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 350 | 446 | 2.7E-18 |
| 22 | g5256.t2 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 447 | 545 | 7.5E-25 |
| 28 | g5256.t2 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 546 | 655 | 4.0E-24 |
| 24 | g5256.t2 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 662 | 773 | 4.4E-18 |
| 27 | g5256.t2 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 774 | 899 | 1.5E-22 |
| 54 | g5256.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1283 | 1334 | - |
| 53 | g5256.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1307 | 1321 | - |
| 55 | g5256.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1458 | 1481 | - |
| 10 | g5256.t2 | PANTHER | PTHR13817:SF127 | LP22668P | 12 | 210 | 1.3E-244 |
| 13 | g5256.t2 | PANTHER | PTHR13817 | TITIN | 12 | 210 | 1.3E-244 |
| 8 | g5256.t2 | PANTHER | PTHR13817:SF127 | LP22668P | 207 | 240 | 1.3E-244 |
| 11 | g5256.t2 | PANTHER | PTHR13817 | TITIN | 207 | 240 | 1.3E-244 |
| 9 | g5256.t2 | PANTHER | PTHR13817:SF127 | LP22668P | 245 | 1024 | 1.3E-244 |
| 12 | g5256.t2 | PANTHER | PTHR13817 | TITIN | 245 | 1024 | 1.3E-244 |
| 1 | g5256.t2 | Pfam | PF13927 | Immunoglobulin domain | 15 | 97 | 4.1E-15 |
| 2 | g5256.t2 | Pfam | PF07679 | Immunoglobulin I-set domain | 118 | 210 | 3.8E-14 |
| 5 | g5256.t2 | Pfam | PF07679 | Immunoglobulin I-set domain | 261 | 347 | 2.9E-18 |
| 3 | g5256.t2 | Pfam | PF07679 | Immunoglobulin I-set domain | 351 | 442 | 2.0E-13 |
| 4 | g5256.t2 | Pfam | PF07679 | Immunoglobulin I-set domain | 453 | 537 | 2.2E-17 |
| 6 | g5256.t2 | Pfam | PF00041 | Fibronectin type III domain | 557 | 643 | 1.1E-12 |
| 7 | g5256.t2 | Pfam | PF00041 | Fibronectin type III domain | 776 | 861 | 3.0E-14 |
| 30 | g5256.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 899 | - |
| 31 | g5256.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 900 | 924 | - |
| 29 | g5256.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 925 | 1481 | - |
| 59 | g5256.t2 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 15 | 110 | 14.473 |
| 63 | g5256.t2 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 116 | 209 | 12.114 |
| 61 | g5256.t2 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 261 | 346 | 13.947 |
| 62 | g5256.t2 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 351 | 443 | 11.769 |
| 60 | g5256.t2 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 450 | 536 | 14.528 |
| 56 | g5256.t2 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 557 | 654 | 23.542 |
| 58 | g5256.t2 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 674 | 771 | 13.476 |
| 57 | g5256.t2 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 776 | 871 | 21.412 |
| 39 | g5256.t2 | SMART | SM00409 | IG_3c | 21 | 112 | 4.8E-8 |
| 45 | g5256.t2 | SMART | SM00408 | igc2_5 | 27 | 100 | 4.7E-11 |
| 40 | g5256.t2 | SMART | SM00409 | IG_3c | 122 | 211 | 3.8E-12 |
| 49 | g5256.t2 | SMART | SM00408 | igc2_5 | 128 | 199 | 7.2E-10 |
| 38 | g5256.t2 | SMART | SM00409 | IG_3c | 267 | 348 | 4.8E-15 |
| 46 | g5256.t2 | SMART | SM00408 | igc2_5 | 273 | 337 | 4.5E-15 |
| 50 | g5256.t2 | SMART | SM00406 | igv1_8 | 277 | 332 | 0.013 |
| 37 | g5256.t2 | SMART | SM00409 | IG_3c | 357 | 443 | 3.6E-9 |
| 47 | g5256.t2 | SMART | SM00408 | igc2_5 | 363 | 432 | 2.6E-10 |
| 51 | g5256.t2 | SMART | SM00406 | igv1_8 | 367 | 427 | 0.44 |
| 41 | g5256.t2 | SMART | SM00409 | IG_3c | 457 | 538 | 2.0E-11 |
| 48 | g5256.t2 | SMART | SM00408 | igc2_5 | 463 | 527 | 2.2E-15 |
| 52 | g5256.t2 | SMART | SM00406 | igv1_8 | 467 | 522 | 0.16 |
| 44 | g5256.t2 | SMART | SM00060 | FN3_2 | 555 | 640 | 2.2E-14 |
| 42 | g5256.t2 | SMART | SM00060 | FN3_2 | 672 | 758 | 4.3 |
| 43 | g5256.t2 | SMART | SM00060 | FN3_2 | 773 | 858 | 5.5E-8 |
| 16 | g5256.t2 | SUPERFAMILY | SSF48726 | Immunoglobulin | 15 | 112 | 1.94E-19 |
| 19 | g5256.t2 | SUPERFAMILY | SSF48726 | Immunoglobulin | 118 | 212 | 2.7E-19 |
| 20 | g5256.t2 | SUPERFAMILY | SSF48726 | Immunoglobulin | 259 | 352 | 8.95E-24 |
| 18 | g5256.t2 | SUPERFAMILY | SSF48726 | Immunoglobulin | 351 | 450 | 2.11E-18 |
| 17 | g5256.t2 | SUPERFAMILY | SSF48726 | Immunoglobulin | 450 | 538 | 1.36E-23 |
| 14 | g5256.t2 | SUPERFAMILY | SSF49265 | Fibronectin type III | 552 | 652 | 2.33E-20 |
| 15 | g5256.t2 | SUPERFAMILY | SSF49265 | Fibronectin type III | 682 | 868 | 5.62E-30 |
| 36 | g5256.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 900 | 922 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5256/g5256.t2; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5256.t2.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed