Gene loci information

Transcript annotation

  • This transcript has been annotated as Fatty acid synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5437 g5437.t1 TSS g5437.t1 9565372 9565372
chr_2 g5437 g5437.t1 isoform g5437.t1 9565534 9573416
chr_2 g5437 g5437.t1 exon g5437.t1.exon1 9565534 9565973
chr_2 g5437 g5437.t1 cds g5437.t1.CDS1 9565534 9565973
chr_2 g5437 g5437.t1 exon g5437.t1.exon2 9566053 9566256
chr_2 g5437 g5437.t1 cds g5437.t1.CDS2 9566053 9566256
chr_2 g5437 g5437.t1 exon g5437.t1.exon3 9566688 9568523
chr_2 g5437 g5437.t1 cds g5437.t1.CDS3 9566688 9568523
chr_2 g5437 g5437.t1 exon g5437.t1.exon4 9568583 9568980
chr_2 g5437 g5437.t1 cds g5437.t1.CDS4 9568583 9568980
chr_2 g5437 g5437.t1 exon g5437.t1.exon5 9569044 9571193
chr_2 g5437 g5437.t1 cds g5437.t1.CDS5 9569044 9571193
chr_2 g5437 g5437.t1 exon g5437.t1.exon6 9571257 9571606
chr_2 g5437 g5437.t1 cds g5437.t1.CDS6 9571257 9571606
chr_2 g5437 g5437.t1 exon g5437.t1.exon7 9571670 9572750
chr_2 g5437 g5437.t1 cds g5437.t1.CDS7 9571670 9572750
chr_2 g5437 g5437.t1 exon g5437.t1.exon8 9572811 9573416
chr_2 g5437 g5437.t1 cds g5437.t1.CDS8 9572811 9573416
chr_2 g5437 g5437.t1 TTS g5437.t1 9573499 9573499

Sequences

>g5437.t1 Gene=g5437 Length=7065
ATGAGCAAAAGTGAACAAATTAATGGCATAGATATGGATGGTGAAGCAGTTGTTGTTTCT
GGAATATCAGGAAGATTTCCAAATGCGGATAATGTTAAAGAATTTGAATATAATTTATAT
AATAAAATTGATATGACAGATGAGGATGAAAGTAGATGGAAACATTTTCATCCTGAAGTG
CCAGCGCGTACAGGAAAAATTCGAAATCTTGAAAAATTTGATGCATCGTTTTTTTCAATT
TTAAATAAGCATGCAAATTGGATGGATCCACAATGTCGTTGTTTATTGGAGCATGCTTAT
GAGGCCATAATTGATGCCGGTATTAGTCCGCAATCATTAGTTGGAAGTCGTACTGGTGTT
TTTATTGGCTGTTGCTTCTCAGATTCTCGTGATGTATTTTTCTATAAAACGCCAGTTAAA
GAGGGTTATGGTGTTTTTGGAAATGCAAATTTTTACTTATCTAATCGTCTATCGTATGCA
CTTGGATTATGTGGACCATCTTTTACTGTCGACACAGCTTGCTCGAGTTCAGCATACGCA
TTAGATTGTGCATACAAATACATCATGAGTGGTGCTTGTGATAGTGCAATTGTCGGTGGA
TCACAGTTGGTACTCAATCTCACATCAACTGTTGAATACTCCAGACTTCGAATTTTGGCG
CCTGATGGAGAGTTTTGTCGACCATTTGATGAAAATGCTACTGGATTCACTCGTGCTGAT
ACCATAAGTGTCATATTTTTACAACGTCAAAAAGATTCAAAGCGTGTTTATGCTCAACTT
ATGCATACAAATTCAAACAATGATGGTTTTAAGAAAGAAGGAAGTTCTTTCCCTTCACGA
GTAATGCAACAAAAACTTATGGAAGATTTCTTTAAACAATCTAAAATTGATCCAAGTTTG
ATTGATTTTGTGGAAGCACATTCAACAGGTACACGTTTGGGTGATCCTGAAGAAGTGGCA
GCAATTGATGAAGTTTTCTGTAAAAATAAACACCGCAAAAAGCCATTACCAATTGGCAGT
GTAAAATCAAACATGGGACATGCTGAAGCATCCAGTGGCGTTGCTTCAATCGCTAAAATT
TTACTTGCTTTCGAGAACAAGAAAATTGCACCCAATATCAATGTTACCAACATGCGTAAA
GACATTCCATCTTTTGCCGAGGGTCGTATTAGAGTTGTTACTGAAGTTGAAGATTTGGCT
GGTCCATATATATCAATGAATAGTTTTGGTTTAGGTGGGGCAAACGCGCATTGTCTTTTC
AAGGGAAATTTAAAAGAAAAAGTTAACCACGGAATCCCTTCAGATGATTTGGGTCGAATG
GTTTTGTGGTCAGGACGAACAGAAGAAGCATTAAATACAATATTTGATGACATCTTACAA
AGACCACTTGATGCTGAATATATTGCTCTACTTCAAAATTCACAAATACAAACCAATTTT
GCTAACATTTATCGTGGATATGGCATTTTCAAACATGATCCTACGACACAGAAAGCAATT
TGTATTCAACGTGACATTCAACACTTTAACGGAGAGAAACGTCCAATTGTTTGGGTGTAT
AGTGGAATTGGCAGTCAATGGGCAGAAATGGGAACTGATTTAATGAATATTCCCATTTTT
GCAGAAACAATTAATAAATGTCATAATTTGCTTGCACCAAAGGGTATCAATTTGAAACAT
ATTATTACTTCACCTGATAAATCATTGTTTAACAACGTTCTCAATTCATACGTTGGTATT
GTCTCAATTGAAATTGCATTGACAAATATACTCAAGGCCATAGGCATTGTACCGGATTAC
ATCATAGGTCATTCAGTTGGTGAGATGGGCTGTGCATATGGCGATGGTTGTTGGACAGCT
GAGGAAACAATTTTAGCAGCATACGCTCGTGGTGTTGCAAGTTGTGAATCTAAAACTATA
GATGGTGCAATGGCTGCTGTTGGATTAAATTTCCGTGAAGTTGAAAAATCTTTACCTTCA
ACTATAGATATTGCTTGTCATAATGGCGCTGACTCAACCACCATTTCAGGGCCAGCTAAT
GCTGTGCGCGAATATGTTAAACAACTAAAAGAAAAGAATATTTTTGCAAAGGAAGTTGAA
AGTTCAGGTTGTCCACTTCACAGTCGATACATTACAAAGATGGGAGAAAATTTATTACGT
CGTTTAAGTGAAGTCATAAAGAATCCTAAAAAACGATCTGAAAAATGGTTGAGTTCTAGT
TTCCCACAATCGGAATGGAATCACATTAATGGTGAAAGTCAATTTTCATCGGCAGCATAT
CATACAAAGAATTTACTAAATCCCGTGTTATTTGAAGAAGTTACAGAAATGCTTCCAAAG
AATGCATTGACAATTGAAATTGCGCCTTGTGGTCTTTTGAGATCAATTTTAAAACGATCA
ATGAAAGAAGGTGTTCAATTGAGTATCACACAACGTGACAGTAAAAATGGAGCTCAAATA
CTTATTGAAGCTTTGGGAAAACTTTTCCAAAATGGCGTTGATATGGACATTGGAAAAATT
TATCCTGAAATTCAATTCCCAGTTTCACGTGGAACACCAATGATTTCTCCTATTTATAAA
TGGAATCATCAAGATAATTATTTTGTGCCTCTTTTCGACTCATTCAACTCATATGAGCGT
AGAAATATGCTTATCAATGTAAGTGATAAGAACTTTGAATTTGTACAAGGTCACATCATC
GATGGAAAAGTTCTCTTTCCCGGCACTGGCTGGCTTTACCTTGTCTGGGAAACTTTCGCA
ATGATGAATGGTATTCATCATTCGAAGCTAAAGGTCATTTTTGAAGATGTCAAGTTTTTG
CGTGCTACATCATTGGCCAAAAATCAAGACGTACTTGTTACTATATCAATTCACAGAGGT
ACTGGACGATTTGAAATAATTGAGGGAAGATCGGCTATTGGCAATGGTTATATAAAAATT
GGCGAAAATGTAGAAATGACTCATATAGATGTTGAAGAAAAGAATGACGCTGTTATTTTA
CAAGAACCTGACTTTTACAAAGAAATGCGACTTCGTGGATATTATCATCAGGGATTATTT
AGAGCTATTAAAGAGATACGTGATGATGGTCTTCAGGGAAAAATAAAATGGAACTCAGAA
TGGGTGACATTTATGGATTGTCTTATTCAATTCCAAGTTGTCATGAAAGATACACGTATG
TTGATTTTACCAACTAGTGTGCGTAAAATGATTATTGATCCAATTAAACATCAAAAAGTG
CTTGATAGTGCAAAAACTGATGAAATTCTTTTTGATGTCAAGTCATGTCCATATATGCAT
GTTATTCAATCAGGTGGAGTCGAAATTCATGGTTTTGAAGGAAGTTTAGTAAATCGTAGG
CGTCCACCTTCTGATCCTGTTCTCGAATCATATAGGTTTATACCATATAAAAGCAATGAA
ATTTTTTCAAAGAGAAACGCTGCAAAAATTTGTGTACAAATCGCCCTTGAGAATACACCA
TCAAAAAAATTATCATCAGTTGAAATAGACGACGGTAAAACAAATGAAATAATGAGTGAA
TATATATTTAAAGGTCTTGGCGATCTTCCACTCATAACGCCAGAAGTTAATTATTTGACC
TCAAAAGATGTTGAACTCGAAAATGTTTCAGTTCAAAAAACAGAGTTTTCGTCATTCAGC
AATGTCAATATCATCATCAAGTCAAATTGCACAAATGACTCGGCATTCATAGATTCTATT
AAAACAGTTCTTAATGAAAATGGTTTAATTATCTCAAAGGAACAGACAACAAGTAACGCA
GTTATTAATGATAAATTACAACTTATTGGTGAAATTAAAACAGATGATTGCTTATTAAAA
TTATTGAAATTTAAAAAGCAAATCGAAAAGCCCGAGAAAATCATCAAAATTACACCAAAT
ATCAATGAATGGCTTGAACCATTAAAACAATCGCTTTCAAGTAATTCAGTAATTGCTTAT
TCTCAAAATGACGATATGTCTGGAATAATTGGTTTGATAAACTGCATTCGAAAAGAACCA
AATGGTGAAAAGTTCCGTTGCTTCTTCATTGACGATAATGCAGCACCGAAGTTTGATATA
AACGACTCATTCTATAAAAATCAACTTGATTTAGGACTTATAATGAATGTTTACAAAAAC
AAGCAATGGGGTAGTTACAGACATCTCGAATTAACTGAACAAACTCAATTGAAACCAAGA
AAGGAACATTGCTTTGCAAATTGTATTATCAAAGGTGATTTGTCAACACTAACATGGCTT
CATGGACCATTAAATCCGGAAAATTCAAATAAAGAAATAATTAACATTTCATATGCATCA
CTTAATTTCCGTGATGTTATGTTAGCAACAGGAAAAATAAACTCAGATGATGTTCTCGAT
AGAATTCAACAACAGTGTGTGTTTGGATTTGAATTTTCGGGAACTACGAATAATGGTAGA
AAAGTTATGGGTTTGGGACCAACTGGTGCCATGGCAACACAATATGATGCCAATAGAACT
TTATTATGGGATGTACCCAAAAACTGGTCACTCGAGGAGGCTGCAACAGTTCCACTCGTA
TATTACACTGTATATTTGGCTTTCTTTAAAACCGCTTCAATCAAAAAAGGCAATTCAATT
TTGATTCATGCTGGAAGTGGAGGTGTTGGTATGGCAGCAATTCAAGTAGCTCTCGCATAT
GATTTAGAAGTTTATACCACCGTTGGATCCACTGAGAAAAGAAATTATTTGCTTTCACGA
TTCCCTAAACTTAAAGCAGAAAACATTGGCAACTCAAGAGATACATCATTCGAAAGATTA
ATTACTGTAAGAACAAAAGGCAAAGGAGTAGATTATGTACTCAATTCATTATCAGATGAT
AAATTACAAGCTTCAATACGTTGTCTTGGAATGAACGGAACTTTCCTTGAAATTGGCAAA
TTTGATATCATGAATAAAACAAACATTCATATGGGACATCTTTCAAAGAGAGTAAACTTT
AAAGCTGTTTTCTTTGATGACGTTCCTGTTATATCAGAAGAACTTAAGATTGTACAGGAC
CTTGTTACTAAAGATATCAATGCTGGTATCATCAAACCATTAAAAACAACAGTGTTTGAA
GCTTCTGAAATTGAACAAGCATTCAGATTTATGGGATCAGGAAAACACATTGGAAAAGTT
CTCCTGAAAATGAGAAATAATCCAGATGACATTGAATCACTTCCGATCAAATTGAATCCT
CGTGTTTATTGTGATGCTGAAGAAACTTATGTACTCGTCGGTGGGCTTGGTGGTTTTGGT
CTCGAATTAGCAGATTGGCTTATATTGAGAGGTTGTAGAAAACTATTAATAAGCTCTGGT
CGTGGAATTACAAATGCTTATCAAGCATCAAGAATTAAAATTTGGAAAAGTTATGGTGTA
GATGTTCGAATTACCACAGAAGATGTGACAACTGAAAAGGGTTGCGAGAAACTTTTGATC
GATGCAGTAAAAATTGGTCCCGTAGGTGGAATTTTCAATCTTGCTGTTGCACTGCGTGAT
GGAATTTTTGAAAATCAAACAACACAAATGTTTATGGAATCACTTGCGCCTAAAGCAAAT
GCCACTCAATATCTTGACAAACTTTCACGCAAGTTGTGTCCTAACTTGAAACATTTCGTC
ATCTTTTCAAGTGTTTCATGCGGCAGAGGTAATGCAGGTCAAACCAATTATGGTATGGGT
AATTCAATAATGGAGAGAATTTGTGAAATTCGACATAAGATCGGTTTGCCAGCCAAGGCT
GTTCAATGGGGTGCAATCGGTGATGTTGGTTTGTTGGCAGTTTTACAAGAAAATAACATG
GATATGGAAATTAGTGGAACACTTCCACAAAGAATAAATTCATGTCTAGAAGTTCTTGAC
ACTCTTCTCAACAGCAGCGAACCAATTGTTGCAAGTATGGTAGTTGCAGAGAAGCGTTTT
GAAGACATTAAGAAGGGTAACATCATTGAAGCAATCATGAATATTATGGCAATTCGTGAT
CGAAAACAAATATCAATGGAAGCAAGTCTCTCAAAGTTGGGTATGGACTCTTTGATGGGC
GTTGAAATTCAACAAATATTAGAAAGAGATTATGACATTGTTTTATCATCGCAAGAGCTC
AGATCTCTTACAATGGGTCAATTAGAAAAACTTGTAACTTCAAAAGATTCATCTGACAGT
GGAGATAAAAAAGCAGTAAATGGTGATGCTTCACTTGGCATAGAACTTTTGCTTACTAGT
TTTGGTGATGAAAAGCAAAGTAATGAAACAATTTTAAAACTTAATAAAGTCACATCAGGA
AACAACAAAAAAGTTCTCATTGTACCTGGCTTTGAAGGTCAAGCATCAGATATTTGGATT
AATCTTGCTGAAAACTTGAAATATCCTACATATGCATTACAACTAGGTAACACAGTCGAA
GAAAAGTCACTTGATGATATATATGAAAAAGTGTCAAAACACATTTTAAATTTATTCTCG
GGCAAAGAAGAATTCATATTAATAGGTTATTCGTTTGGCTCGATGCTTGCGCTTAAAATT
GCAAGTTTACTTGAATCCAAAGGCCTAAATGGAAATGTTGTCATTATTGATGGCTCACCG
AAATTCATTAATGACATTTCAAATCAACTGATGCCTAAAGATTATAATGAAGAACATATT
CAAGGACTCATTATCTTAGGTTGTGTAAAACTCCTTTTCCCTGATAAAGCACAAGAAATT
ACAAAGAAAATTTTCGCCAGTGACTCATTAGATGAAAGATTCCAAATTTTCCTTGATACT
GCTAAAAGCCGAAGTGAATATAGCGTTGAATACGGAAGAAAAATGATTACTGGTCTTTTC
AATAGATTTAAAATTTGTCTAAGTGCTAACAAAATTTCATACCCAATACTGAAGTCAAAT
GTTTCATTTATAAAAGCAACTCAGTCACCATTAAGCTCAATTGAAGAGGATTATGGTTTG
AAAAAATATGTCAACAAAGACATGAGTGTGACTGCAATAAATGGTGACCATGTGTCTATA
CTCAGTAGTCCCGAATTAATTAAGCTTTTAAATTCACATCATTAG

>g5437.t1 Gene=g5437 Length=2354
MSKSEQINGIDMDGEAVVVSGISGRFPNADNVKEFEYNLYNKIDMTDEDESRWKHFHPEV
PARTGKIRNLEKFDASFFSILNKHANWMDPQCRCLLEHAYEAIIDAGISPQSLVGSRTGV
FIGCCFSDSRDVFFYKTPVKEGYGVFGNANFYLSNRLSYALGLCGPSFTVDTACSSSAYA
LDCAYKYIMSGACDSAIVGGSQLVLNLTSTVEYSRLRILAPDGEFCRPFDENATGFTRAD
TISVIFLQRQKDSKRVYAQLMHTNSNNDGFKKEGSSFPSRVMQQKLMEDFFKQSKIDPSL
IDFVEAHSTGTRLGDPEEVAAIDEVFCKNKHRKKPLPIGSVKSNMGHAEASSGVASIAKI
LLAFENKKIAPNINVTNMRKDIPSFAEGRIRVVTEVEDLAGPYISMNSFGLGGANAHCLF
KGNLKEKVNHGIPSDDLGRMVLWSGRTEEALNTIFDDILQRPLDAEYIALLQNSQIQTNF
ANIYRGYGIFKHDPTTQKAICIQRDIQHFNGEKRPIVWVYSGIGSQWAEMGTDLMNIPIF
AETINKCHNLLAPKGINLKHIITSPDKSLFNNVLNSYVGIVSIEIALTNILKAIGIVPDY
IIGHSVGEMGCAYGDGCWTAEETILAAYARGVASCESKTIDGAMAAVGLNFREVEKSLPS
TIDIACHNGADSTTISGPANAVREYVKQLKEKNIFAKEVESSGCPLHSRYITKMGENLLR
RLSEVIKNPKKRSEKWLSSSFPQSEWNHINGESQFSSAAYHTKNLLNPVLFEEVTEMLPK
NALTIEIAPCGLLRSILKRSMKEGVQLSITQRDSKNGAQILIEALGKLFQNGVDMDIGKI
YPEIQFPVSRGTPMISPIYKWNHQDNYFVPLFDSFNSYERRNMLINVSDKNFEFVQGHII
DGKVLFPGTGWLYLVWETFAMMNGIHHSKLKVIFEDVKFLRATSLAKNQDVLVTISIHRG
TGRFEIIEGRSAIGNGYIKIGENVEMTHIDVEEKNDAVILQEPDFYKEMRLRGYYHQGLF
RAIKEIRDDGLQGKIKWNSEWVTFMDCLIQFQVVMKDTRMLILPTSVRKMIIDPIKHQKV
LDSAKTDEILFDVKSCPYMHVIQSGGVEIHGFEGSLVNRRRPPSDPVLESYRFIPYKSNE
IFSKRNAAKICVQIALENTPSKKLSSVEIDDGKTNEIMSEYIFKGLGDLPLITPEVNYLT
SKDVELENVSVQKTEFSSFSNVNIIIKSNCTNDSAFIDSIKTVLNENGLIISKEQTTSNA
VINDKLQLIGEIKTDDCLLKLLKFKKQIEKPEKIIKITPNINEWLEPLKQSLSSNSVIAY
SQNDDMSGIIGLINCIRKEPNGEKFRCFFIDDNAAPKFDINDSFYKNQLDLGLIMNVYKN
KQWGSYRHLELTEQTQLKPRKEHCFANCIIKGDLSTLTWLHGPLNPENSNKEIINISYAS
LNFRDVMLATGKINSDDVLDRIQQQCVFGFEFSGTTNNGRKVMGLGPTGAMATQYDANRT
LLWDVPKNWSLEEAATVPLVYYTVYLAFFKTASIKKGNSILIHAGSGGVGMAAIQVALAY
DLEVYTTVGSTEKRNYLLSRFPKLKAENIGNSRDTSFERLITVRTKGKGVDYVLNSLSDD
KLQASIRCLGMNGTFLEIGKFDIMNKTNIHMGHLSKRVNFKAVFFDDVPVISEELKIVQD
LVTKDINAGIIKPLKTTVFEASEIEQAFRFMGSGKHIGKVLLKMRNNPDDIESLPIKLNP
RVYCDAEETYVLVGGLGGFGLELADWLILRGCRKLLISSGRGITNAYQASRIKIWKSYGV
DVRITTEDVTTEKGCEKLLIDAVKIGPVGGIFNLAVALRDGIFENQTTQMFMESLAPKAN
ATQYLDKLSRKLCPNLKHFVIFSSVSCGRGNAGQTNYGMGNSIMERICEIRHKIGLPAKA
VQWGAIGDVGLLAVLQENNMDMEISGTLPQRINSCLEVLDTLLNSSEPIVASMVVAEKRF
EDIKKGNIIEAIMNIMAIRDRKQISMEASLSKLGMDSLMGVEIQQILERDYDIVLSSQEL
RSLTMGQLEKLVTSKDSSDSGDKKAVNGDASLGIELLLTSFGDEKQSNETILKLNKVTSG
NNKKVLIVPGFEGQASDIWINLAENLKYPTYALQLGNTVEEKSLDDIYEKVSKHILNLFS
GKEEFILIGYSFGSMLALKIASLLESKGLNGNVVIIDGSPKFINDISNQLMPKDYNEEHI
QGLIILGCVKLLFPDKAQEITKKIFASDSLDERFQIFLDTAKSRSEYSVEYGRKMITGLF
NRFKICLSANKISYPILKSNVSFIKATQSPLSSIEEDYGLKKYVNKDMSVTAINGDHVSI
LSSPELIKLLNSHH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
36 g5437.t1 CDD cd00833 PKS 15 419 1.66506E-142
37 g5437.t1 CDD cd05195 enoyl_red 1434 1722 7.28107E-96
35 g5437.t1 CDD cd08954 KR_1_FAS_SDR_x 1764 1976 2.61408E-59
27 g5437.t1 Gene3D G3DSA:3.40.47.10 - 13 440 6.5E-132
32 g5437.t1 Gene3D G3DSA:3.30.70.3290 - 441 868 3.9E-160
30 g5437.t1 Gene3D G3DSA:3.40.366.10 - 512 832 3.9E-160
33 g5437.t1 Gene3D G3DSA:3.10.129.110 - 881 1122 5.4E-66
26 g5437.t1 Gene3D G3DSA:3.40.50.720 - 1303 1975 3.8E-278
29 g5437.t1 Gene3D G3DSA:3.90.180.10 - 1393 1742 3.8E-278
28 g5437.t1 Gene3D G3DSA:1.10.1200.10 - 1981 2065 6.1E-18
31 g5437.t1 Gene3D G3DSA:3.40.50.1820 - 2103 2345 4.7E-40
34 g5437.t1 Gene3D G3DSA:1.10.1470.20 Fatty acid synthase; domain 2 2203 2289 4.7E-40
10 g5437.t1 PANTHER PTHR43775 FATTY ACID SYNTHASE 11 2352 0.0
11 g5437.t1 PANTHER PTHR43775:SF23 FATTY ACID SYNTHASE 3 11 2352 0.0
4 g5437.t1 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 15 252 4.1E-57
1 g5437.t1 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 257 375 2.2E-33
9 g5437.t1 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 380 489 5.5E-23
8 g5437.t1 Pfam PF00698 Acyl transferase domain 517 803 7.2E-58
3 g5437.t1 Pfam PF14765 Polyketide synthase dehydratase 890 1074 4.3E-11
5 g5437.t1 Pfam PF00107 Zinc-binding dehydrogenase 1548 1667 8.4E-12
2 g5437.t1 Pfam PF08659 KR domain 1749 1927 1.3E-38
6 g5437.t1 Pfam PF00550 Phosphopantetheine attachment site 2000 2043 3.0E-4
7 g5437.t1 Pfam PF00975 Thioesterase domain 2105 2348 3.9E-9
25 g5437.t1 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 165 181 -
23 g5437.t1 SMART SM00825 Beta-ketoacyl synthase 17 418 2.2E-100
21 g5437.t1 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 519 814 1.4E-18
20 g5437.t1 SMART SM00829 PKS_ER_names_mod 1412 1722 1.7E-106
24 g5437.t1 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1748 1929 7.6E-21
22 g5437.t1 SMART SM00823 Phosphopantetheine attachment site 1985 2043 0.0068
14 g5437.t1 SUPERFAMILY SSF53901 Thiolase-like 12 420 1.6E-63
13 g5437.t1 SUPERFAMILY SSF52151 FabD/lysophospholipase-like 516 803 1.28E-35
19 g5437.t1 SUPERFAMILY SSF55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase 641 697 4.19E-9
17 g5437.t1 SUPERFAMILY SSF50129 GroES-like 1412 1536 3.47E-17
16 g5437.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1508 1673 3.07E-36
15 g5437.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1748 1933 3.37E-25
18 g5437.t1 SUPERFAMILY SSF47336 ACP-like 1987 2053 2.75E-8
12 g5437.t1 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 2079 2350 7.5E-27

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5437/g5437.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5437.t1.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031177 phosphopantetheine binding MF
GO:0016746 acyltransferase activity MF
GO:0055114 NA NA
GO:0009058 biosynthetic process BP
GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity MF
GO:0006633 fatty acid biosynthetic process BP
GO:0016740 transferase activity MF
GO:0004312 fatty acid synthase activity MF
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values