General information for g5437.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fatty acid synthase.
Parent gene
- The parent gene g5437 is located on chr_2: 9568079..9573416 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5437 | g5437.t3 | isoform | g5437.t3 | 9568079 | 9570436 |
| chr_2 | g5437 | g5437.t3 | exon | g5437.t3.exon1 | 9568079 | 9568523 |
| chr_2 | g5437 | g5437.t3 | cds | g5437.t3.CDS1 | 9568183 | 9568523 |
| chr_2 | g5437 | g5437.t3 | exon | g5437.t3.exon2 | 9568583 | 9568980 |
| chr_2 | g5437 | g5437.t3 | cds | g5437.t3.CDS2 | 9568583 | 9568980 |
| chr_2 | g5437 | g5437.t3 | exon | g5437.t3.exon3 | 9569044 | 9570436 |
| chr_2 | g5437 | g5437.t3 | cds | g5437.t3.CDS3 | 9569044 | 9570434 |
| chr_2 | g5437 | g5437.t3 | TTS | g5437.t3 | 9570446 | 9570446 |
| chr_2 | g5437 | g5437.t3 | TSS | g5437.t3 | NA | NA |
Sequences
>g5437.t3 Gene=g5437 Length=2236
CTAATGCTGTGCGCGAATATGTTAAACAACTAAAAGAAAAGAATATTTTTGCAAAGGAAG
TTGAAAGTTCAGGTTGTCCACTTCACAGTCGATACATTACAAAGATGGGAGAAAATTTAT
TACGTCGTTTAAGTGAAGTCATAAAGAATCCTAAAAAACGATCTGAAAAATGGTTGAGTT
CTAGTTTCCCACAATCGGAATGGAATCACATTAATGGTGAAAGTCAATTTTCATCGGCAG
CATATCATACAAAGAATTTACTAAATCCCGTGTTATTTGAAGAAGTTACAGAAATGCTTC
CAAAGAATGCATTGACAATTGAAATTGCGCCTTGTGGTCTTTTGAGATCAATTTTAAAAC
GATCAATGAAAGAAGGTGTTCAATTGAGTATCACACAACGTGACAGTAAAAATGGAGCTC
AAATACTTATTGAAGCTTTGGGAAAACTTTTCCAAAATGGCGTTGATATGGACATTGGAA
AAATTTATCCTGAAATTCAATTCCCAGTTTCACGTGGAACACCAATGATTTCTCCTATTT
ATAAATGGAATCATCAAGATAATTATTTTGTGCCTCTTTTCGACTCATTCAACTCATATG
AGCGTAGAAATATGCTTATCAATGTAAGTGATAAGAACTTTGAATTTGTACAAGGTCACA
TCATCGATGGAAAAGTTCTCTTTCCCGGCACTGGCTGGCTTTACCTTGTCTGGGAAACTT
TCGCAATGATGAATGGTATTCATCATTCGAAGCTAAAGGTCATTTTTGAAGATGTCAAGT
TTTTGCGTGCTACATCATTGGCCAAAAATCAAGACGTACTTGTTACTATATCAATTCACA
GAGGTACTGGACGATTTGAAATAATTGAGGGAAGATCGGCTATTGGCAATGGTTATATAA
AAATTGGCGAAAATGTAGAAATGACTCATATAGATGTTGAAGAAAAGAATGACGCTGTTA
TTTTACAAGAACCTGACTTTTACAAAGAAATGCGACTTCGTGGATATTATCATCAGGGAT
TATTTAGAGCTATTAAAGAGATACGTGATGATGGTCTTCAGGGAAAAATAAAATGGAACT
CAGAATGGGTGACATTTATGGATTGTCTTATTCAATTCCAAGTTGTCATGAAAGATACAC
GTATGTTGATTTTACCAACTAGTGTGCGTAAAATGATTATTGATCCAATTAAACATCAAA
AAGTGCTTGATAGTGCAAAAACTGATGAAATTCTTTTTGATGTCAAGTCATGTCCATATA
TGCATGTTATTCAATCAGGTGGAGTCGAAATTCATGGTTTTGAAGGAAGTTTAGTAAATC
GTAGGCGTCCACCTTCTGATCCTGTTCTCGAATCATATAGGTTTATACCATATAAAAGCA
ATGAAATTTTTTCAAAGAGAAACGCTGCAAAAATTTGTGTACAAATCGCCCTTGAGAATA
CACCATCAAAAAAATTATCATCAGTTGAAATAGACGACGGTAAAACAAATGAAATAATGA
GTGAATATATATTTAAAGGTCTTGGCGATCTTCCACTCATAACGCCAGAAGTTAATTATT
TGACCTCAAAAGATGTTGAACTCGAAAATGTTTCAGTTCAAAAAACAGAGTTTTCGTCAT
TCAGCAATGTCAATATCATCATCAAGTCAAATTGCACAAATGACTCGGCATTCATAGATT
CTATTAAAACAGTTCTTAATGAAAATGGTTTAATTATCTCAAAGGAACAGACAACAAGTA
ACGCAGTTATTAATGATAAATTACAACTTATTGGTGAAATTAAAACAGATGATTGCTTAT
TAAAATTATTGAAATTTAAAAAGCAAATCGAAAAGCCCGAGAAAATCATCAAAATTACAC
CAAATATCAATGAATGGCTTGAACCATTAAAACAATCGCTTTCAAGTAATTCAGTAATTG
CTTATTCTCAAAATGACGATATGTCTGGAATAATTGGTTTGATAAACTGCATTCGAAAAG
AACCAAATGGTGAAAAGTTCCGTTGCTTCTTCATTGACGATAATGCAGCACCGAAGTTTG
ATATAAACGACTCATTCTATAAAAATCAACTTGATTTAGGACTTATAATGAATGTTTACA
AAAACAAGCAATGGGGTAGTTACAGACATCTCGAATTAACTGAACAAACTCAATTGAAAC
CAAGAAAGGAACATTGCTTTGCAAATTGTATTATCAAAGGTGATTTGTCAACACTAACAT
GGCTTCATGGACCATT
>g5437.t3 Gene=g5437 Length=710
MGENLLRRLSEVIKNPKKRSEKWLSSSFPQSEWNHINGESQFSSAAYHTKNLLNPVLFEE
VTEMLPKNALTIEIAPCGLLRSILKRSMKEGVQLSITQRDSKNGAQILIEALGKLFQNGV
DMDIGKIYPEIQFPVSRGTPMISPIYKWNHQDNYFVPLFDSFNSYERRNMLINVSDKNFE
FVQGHIIDGKVLFPGTGWLYLVWETFAMMNGIHHSKLKVIFEDVKFLRATSLAKNQDVLV
TISIHRGTGRFEIIEGRSAIGNGYIKIGENVEMTHIDVEEKNDAVILQEPDFYKEMRLRG
YYHQGLFRAIKEIRDDGLQGKIKWNSEWVTFMDCLIQFQVVMKDTRMLILPTSVRKMIID
PIKHQKVLDSAKTDEILFDVKSCPYMHVIQSGGVEIHGFEGSLVNRRRPPSDPVLESYRF
IPYKSNEIFSKRNAAKICVQIALENTPSKKLSSVEIDDGKTNEIMSEYIFKGLGDLPLIT
PEVNYLTSKDVELENVSVQKTEFSSFSNVNIIIKSNCTNDSAFIDSIKTVLNENGLIISK
EQTTSNAVINDKLQLIGEIKTDDCLLKLLKFKKQIEKPEKIIKITPNINEWLEPLKQSLS
SNSVIAYSQNDDMSGIIGLINCIRKEPNGEKFRCFFIDDNAAPKFDINDSFYKNQLDLGL
IMNVYKNKQWGSYRHLELTEQTQLKPRKEHCFANCIIKGDLSTLTWLHGP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g5437.t3 | Gene3D | G3DSA:3.40.366.10 | - | 1 | 100 | 0 |
| 5 | g5437.t3 | Gene3D | G3DSA:3.30.70.3290 | - | 104 | 167 | 0 |
| 6 | g5437.t3 | Gene3D | G3DSA:3.10.129.110 | - | 168 | 409 | 0 |
| 4 | g5437.t3 | Gene3D | G3DSA:3.40.50.720 | - | 575 | 691 | 0 |
| 2 | g5437.t3 | PANTHER | PTHR43775 | FATTY ACID SYNTHASE | 1 | 710 | 0 |
| 3 | g5437.t3 | PANTHER | PTHR43775:SF23 | FATTY ACID SYNTHASE 3 | 1 | 710 | 0 |
| 1 | g5437.t3 | Pfam | PF14765 | Polyketide synthase dehydratase | 177 | 361 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5437/g5437.t3; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5437.t3.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016740 | transferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed