Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative CLIP domain-containing serine protease B15.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5463 g5463.t2 TTS g5463.t2 9725568 9725568
chr_2 g5463 g5463.t2 isoform g5463.t2 9725593 9726434
chr_2 g5463 g5463.t2 exon g5463.t2.exon1 9725593 9725775
chr_2 g5463 g5463.t2 cds g5463.t2.CDS1 9725593 9725775
chr_2 g5463 g5463.t2 exon g5463.t2.exon2 9725908 9726335
chr_2 g5463 g5463.t2 cds g5463.t2.CDS2 9725908 9726279
chr_2 g5463 g5463.t2 exon g5463.t2.exon3 9726393 9726434
chr_2 g5463 g5463.t2 TSS g5463.t2 9727169 9727169

Sequences

>g5463.t2 Gene=g5463 Length=653
GCTGTGGAGGATCGCTTATTTCACCGAAATTTGTCTTAACTGCTGCTCATTGTTTATCAC
CACGTGGATTTGGTAATGTAAAATTTGTTAGACTTGGAATGAGCAGTAGATCACAAAATG
ACAATTCAACATTAACATTTGGTGTGACGGAAATTATTCAACATCCTAATTATAATTCAA
AAACATTTAATGAAGACATTGGTTTGCTGAGACTGAATGCAACAGTTCCAATTAATGAAT
ATATTTTACCCATTTGCATGCCAACGAAACTTTATAATCCAAATAAAGCGATTGCATCAG
GATTTGGTAGAACAGGCTATCAACGATCAACTTCAGATAAATTATTGAAAGTAACTTTAG
AAAAATTCACACATGCAGAATGTCAAGAAGCATTTGGAACAGCTATAACTGTGACAAACG
ATACAATGTTGTGTTACGGTCATCATACTGAAAGTAAAGATTCATGTAGTGGGGATTCTG
GCGGACCATTACAAATTTATAATGATAATGAAGTCAAGTGCACATATACGCAAATAGGAG
TCGTCAGTTTTGGTTTAAAACAATGTGGAACTGTTGGAACACCTGGGGTTTATGTTAATG
TTTATAATTATCTCGATTGGATCGAAAAAATTGTTTGGGCAGGTGAAAGTTAA

>g5463.t2 Gene=g5463 Length=184
MSSRSQNDNSTLTFGVTEIIQHPNYNSKTFNEDIGLLRLNATVPINEYILPICMPTKLYN
PNKAIASGFGRTGYQRSTSDKLLKVTLEKFTHAECQEAFGTAITVTNDTMLCYGHHTESK
DSCSGDSGGPLQIYNDNEVKCTYTQIGVVSFGLKQCGTVGTPGVYVNVYNYLDWIEKIVW
AGES

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g5463.t2 CDD cd00190 Tryp_SPc 1 178 1.13099E-60
8 g5463.t2 Gene3D G3DSA:2.40.10.10 - 6 176 1.1E-49
7 g5463.t2 Gene3D G3DSA:2.40.10.10 - 52 168 1.1E-49
2 g5463.t2 PANTHER PTHR24256:SF516 FI20229P1-RELATED 7 178 2.9E-44
3 g5463.t2 PANTHER PTHR24256 TRYPTASE-RELATED 7 178 2.9E-44
5 g5463.t2 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 29 43 1.8E-6
4 g5463.t2 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 120 132 1.8E-6
1 g5463.t2 Pfam PF00089 Trypsin 4 175 4.7E-39
10 g5463.t2 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 121 132 -
12 g5463.t2 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 1 180 20.781
11 g5463.t2 SMART SM00020 trypsin_2 1 175 2.3E-29
6 g5463.t2 SUPERFAMILY SSF50494 Trypsin-like serine proteases 5 180 8.1E-52

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5463/g5463.t2; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5463.t2.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values