Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Connector enhancer of kinase suppressor of ras 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5575 g5575.t5 TSS g5575.t5 10349808 10349808
chr_2 g5575 g5575.t5 isoform g5575.t5 10350059 10354617
chr_2 g5575 g5575.t5 exon g5575.t5.exon1 10350059 10350116
chr_2 g5575 g5575.t5 cds g5575.t5.CDS1 10350059 10350116
chr_2 g5575 g5575.t5 exon g5575.t5.exon2 10350178 10350341
chr_2 g5575 g5575.t5 cds g5575.t5.CDS2 10350178 10350341
chr_2 g5575 g5575.t5 exon g5575.t5.exon3 10350409 10350469
chr_2 g5575 g5575.t5 cds g5575.t5.CDS3 10350409 10350469
chr_2 g5575 g5575.t5 exon g5575.t5.exon4 10350528 10350801
chr_2 g5575 g5575.t5 cds g5575.t5.CDS4 10350528 10350801
chr_2 g5575 g5575.t5 exon g5575.t5.exon5 10354311 10354426
chr_2 g5575 g5575.t5 cds g5575.t5.CDS5 10354311 10354353
chr_2 g5575 g5575.t5 exon g5575.t5.exon6 10354489 10354617
chr_2 g5575 g5575.t5 TTS g5575.t5 10355284 10355284

Sequences

>g5575.t5 Gene=g5575 Length=802
ATGGCATATATTAATGTAAATGATTGGAAATGTGAGCAAGTTATTGAATGGTTAAAAGGA
ATTGAATGCGTAAATAATTTTTACATAAAAGCATTTGCGAATAATCAAATAGGAGGATTT
CAATTGCTCTATATCACACATACAGAACTAAATGAATTGGGTATAAAGAAGATTGGGCAT
CAAGAATTGATATTAGAGGCAGTTGAGCATTTGAAAAATTTTCATTTTAATCTTGAAAAG
GAAAATTTGCAATATCTAGCTCTTCAAGTAGCAACAACGTCCACATCATTATTTAAACAA
CTTTCATATAATCCAGACACAAAACTTGAAAGTGTTGTTTTAAAAGATGTTGCCTACATC
ATATCCAAAGTCAAAACTCTTATTAGTTGGCTCGATAATTCTCCTTTTAAAGGACATTCA
CAATATAGTGAAATGCGTAGAAATTGGCTAAAATTAGGTTTAGAACTCGCGACAATTGCT
CAAAGAGATAGATTTGTCCAAAATCCAATCAAACAAATTACTAGCATAACACAAACTTTA
TCAAAACTTTCTGACTATTCATCGTGCCATTTTTGGAAGAAATGCTCACTCAAGCACTAG
CAGTAATATTAGTACTCAAGCTTTAAAAGACAATTCAGATCATGAGATATTTACACCTAT
TACATTCTCAAAACAACCGTCAAATAATCTGCAACCGTTTCATTTAACACAACATCAAAA
TTATCCCGATTTAACGCTTCCACCCGTTTTTCAACAAGAAACCTACACATTAAATGCATT
AAAGAATTTAAAAAATGAATAA

>g5575.t5 Gene=g5575 Length=199
MAYINVNDWKCEQVIEWLKGIECVNNFYIKAFANNQIGGFQLLYITHTELNELGIKKIGH
QELILEAVEHLKNFHFNLEKENLQYLALQVATTSTSLFKQLSYNPDTKLESVVLKDVAYI
ISKVKTLISWLDNSPFKGHSQYSEMRRNWLKLGLELATIAQRDRFVQNPIKQITSITQTL
SKLSDYSSCHFWKKCSLKH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g5575.t5 Gene3D G3DSA:1.10.150.50 Transcription Factor 2 85 0.000
3 g5575.t5 PANTHER PTHR12844 CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS 1 186 0.000
4 g5575.t5 PANTHER PTHR12844:SF42 CONNECTOR ENHANCER OF KSR PROTEIN CNK 1 186 0.000
2 g5575.t5 Pfam PF00536 SAM domain (Sterile alpha motif) 8 72 0.000
1 g5575.t5 Pfam PF10534 Connector enhancer of kinase suppressor of ras 82 163 0.000
8 g5575.t5 ProSiteProfiles PS50105 SAM domain profile. 9 74 15.582
9 g5575.t5 ProSiteProfiles PS51290 CRIC domain profile. 82 167 14.207
6 g5575.t5 SMART SM00454 SAM_4 6 74 0.000
5 g5575.t5 SUPERFAMILY SSF47769 SAM/Pointed domain 5 79 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5575/g5575.t5; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5575.t5.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed