Gene loci information

Transcript annotation

  • This transcript has been annotated as Dynein heavy chain 8, axonemal.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5598 g5598.t1 isoform g5598.t1 10456794 10471249
chr_2 g5598 g5598.t1 exon g5598.t1.exon1 10456794 10457858
chr_2 g5598 g5598.t1 cds g5598.t1.CDS1 10456794 10457858
chr_2 g5598 g5598.t1 exon g5598.t1.exon2 10457920 10458094
chr_2 g5598 g5598.t1 cds g5598.t1.CDS2 10457920 10458094
chr_2 g5598 g5598.t1 exon g5598.t1.exon3 10458155 10461289
chr_2 g5598 g5598.t1 cds g5598.t1.CDS3 10458155 10461289
chr_2 g5598 g5598.t1 exon g5598.t1.exon4 10461348 10461998
chr_2 g5598 g5598.t1 cds g5598.t1.CDS4 10461348 10461998
chr_2 g5598 g5598.t1 exon g5598.t1.exon5 10462061 10464639
chr_2 g5598 g5598.t1 cds g5598.t1.CDS5 10462061 10464639
chr_2 g5598 g5598.t1 exon g5598.t1.exon6 10464701 10465007
chr_2 g5598 g5598.t1 cds g5598.t1.CDS6 10464701 10465007
chr_2 g5598 g5598.t1 exon g5598.t1.exon7 10465078 10469972
chr_2 g5598 g5598.t1 cds g5598.t1.CDS7 10465078 10469972
chr_2 g5598 g5598.t1 exon g5598.t1.exon8 10470032 10470550
chr_2 g5598 g5598.t1 cds g5598.t1.CDS8 10470032 10470550
chr_2 g5598 g5598.t1 exon g5598.t1.exon9 10470609 10470757
chr_2 g5598 g5598.t1 cds g5598.t1.CDS9 10470609 10470757
chr_2 g5598 g5598.t1 exon g5598.t1.exon10 10470815 10471037
chr_2 g5598 g5598.t1 cds g5598.t1.CDS10 10470815 10471037
chr_2 g5598 g5598.t1 exon g5598.t1.exon11 10471100 10471249
chr_2 g5598 g5598.t1 cds g5598.t1.CDS11 10471100 10471249
chr_2 g5598 g5598.t1 TSS g5598.t1 NA NA
chr_2 g5598 g5598.t1 TTS g5598.t1 NA NA

Sequences

>g5598.t1 Gene=g5598 Length=13848
ATGTCGAAAAAACCAGATATTGATCCTGAACAAGATATTAAACACCTGTTAAAAACTACA
GATGTTTCGGCAACAATTAAAACAATTGCAAGATTACATCGACCCACTTTAACGGTTGAA
ACAAAAGAAGAAAGGAGAGAAAAGTTATTGCTAAAATCAAAAAATGATCGAAGTGTTCGT
GCTAGTAAAACAGAAAACAATGAGCGATATATTCTTGAAGTTGCAAGCATGTTTTTCAAT
ATTCATGAAGATACTCTATTTCAATCTTATATTGATTCACAAGACAACATTGATCTTCTT
AAAAATATTTTCGAACGTAACGGAAGTTTAAAAATTTTGATTCAATACCAGCTGGAGGAT
GCTCCTAATCTTGAATCTGGAAGATTTGATCCAAAATTAAAGTACAAACAAGTAATGCAA
GGCATATTTTCAAGTGGCAGAGGCAAAAAAATTCTTGGTGAATGTGTGGCTGTATATCGC
CTTGATAATTCAACTTTTCAAGATATGAAAAATATTGAGAATGCTTTTTATTTTATGCCG
CTCCCAACTTGTCAAAACACTATTGAGTCCTTTTATGAATTTTTTCTTAAAGTACTTCAA
CCTACCTTGCAAGTTTTCAAAGATTATGGCGAATGTACAGAAAGAGAGAAACAAAATTTT
CTTTATGGTCTAAGTTTATTTCTTCAGTTTTTGAAAAGTACTCAAGAAAATCTCGCTACA
TGTCGAATTGAATTTCCATTTGATAATGATTTTTATAAAGGATTTTTACTCAATGAAATT
CGAATTAAAGAGGCAAGCAAGAATCGCGAGCATGTTTCAAAATGTGAAGCTGAATTTACA
CATTGGATGAATCAAATTCGTGTTGCAATTTCTCAAGGCACTCAATTGATTCAAGAAAAT
GTTGACCATGGACCCCTGAAAGAACTTGAACATTGGCGAAAAATGCTCGCAAAATTTTGT
CATGTGTCAGAGTTCGTTAAATCAAAAATGTTTAATAATTATTATCTTTGTCTTAAACTT
TCAAAGTCAAAAATTCTTTTGCAATGGATGAAAGTTGATGAAGACTTGCGCAAATTGTTA
GTTGAAGCCACTGACAATGTAAGATTTCTTCAATCGATTCAAGAGTATTGGAACCCTTTA
TATAAATGTGAACCGAATGAATTATGTCATCATATTAAATTGTTGCTTAAAATCCTTCAT
GGCGTATACTCTACATCAAATTTCTTCAATACAAGCCTGAGAATAACTAGTTTTCTCTCA
AAAGTTTCAAATCAAATTGTAAATACCTCTCGAAAATATCTAACAAGCAATTTTACAAAA
ACAATTTGGACAGAAGATATGAAAATACTTGTTAAAAAAATCAATGAATGCAAAAACATG
GTTGAAATTTATCGAAATGCATTTTCTTCTATGGTCGATGAGATTGTGGCAAATGGTGAA
AAACCGCTTGAATGTTCTCCGAGTTATCTCTTTGATCGTCTTGAATTGTTTATCAATCGT
TTGTGTAAAATTCGAGAAGTTATGGAAATATGTTTGCGCTATCAAGTGCTTAATCAAATT
CGAATAGGTGGAATGGAATTATTTTCAAATAAAATTTACAATGGTTTCGAGAAAATTGCA
AAAACTTCTTACGATCCACTGGAGTATCGAATCAAGCAATTTGAGCAAGATTTTGTTGAT
TTTCAAGTGTTGGTATCGACAACTGAAGTTGAAATGGAACAATTTCTAATTCATTATTTA
GAAGAAATTCCTACAGTTGAATCCAAAATTCTTGCATTGAAAAGATTTGAAAAGTTAGAT
TTGATGTGCCTTGGTTATGGAAAACGATATATTTCAATTGCTGAGAGTTTACTTAAAGAA
ATGGAAGATATCAAAGACAAATATAATGAAGAACGTGCAAAGCCACCTATGGAAAGAGGT
ATACCACCATATATTACACGAATCAAATGGGCTCGAACATTGCATAAGAAAATTCAAGAA
CCTTTGAAATATCTCACGAAATATGAATGTGTCTACAAACACAAAGTCACACAACAATGT
GTTAAAATGTACAATTTTCTCACTCCTATTCTTGATGGTTATGAAACAACTACTCATAAA
GCATGGTACACTTATGTTGATCAAATTCGTTCGCGGTTGGAATGTCCAATTTTAAAGAAG
CATGCAGAGACAAATCATTATATAATTAATCTTAATCCTTATGTTCTACAAGTGGTGAAA
GAATGTGAATCAATGATGAAATTTGGTCTACAAGTTCCTAAATCAGTTGCTATTTTGACA
TATTGCAAAGACCGTGTTTTTGATGCATACAATATACTTAAAATGCTTGTTCAAAGAAAT
AATCTACTTCGAAAATCAATTAAACCTATTTTTCTTCCATTAATGCGCATACATCTGATA
AAACTTGAAAGAATTTTTGCTCCTGCTTTTTCACAAATCACATGGCTCACATTTGATATT
GAAAATTATTTCATAAATATAGCAAGAATTCTCGAACCACTTGAGGAATTTGTTAAAACC
ATTAATGATATAAACGATGCTCAAATTGAGACACTTTTAGAACATATTGGAAATATGGTT
CTCATACACTTGCCCGAGCAAGCCGTAACTCCTGAAGAATTTTTAGATATGAATCTCGAG
TATCGAAAAAATGTAGAAAAAATTATTCAAATAAAGTCACAAGCTGCAGAAAAATCAACC
GTTGAACTAATCAATAAATTCATCGAAAAAGCTGAAATGGTTCCCTATTATGACAACTCA
GGAAAATATCAACTGCCATATTCAAAAATTGACGAATCTAATAGACGATTTGAAGAAATA
AAACCAATAAATAAATTTGATTGGCTCTCATTTGATAAAATTTTCAAAGCTGTCGGTTAT
GCAACACCAGAAGATAATGAAATTAATGTTTTCAAAGATTTTGACGGATTACATTATGAT
GTAACTTTACTTCATATCGATTGTATGGAGTTATTTGCTTATTACAATCATAGAGTTATT
TCTGTTCTTGCAAAATGCTCAAAAAGAAGCATGGAAATTCTGAAGACACGTTCATATTTA
ACAAGTGTAATAAGAACATATGACTGTGACAATCGTGAAAGTGAACCACTTTTAATAACT
AATATTGAATTAAAAATTCCTGATTTCAAACTTGTACCTGATATTACAAAAATTCAATAT
TTTTATGATCAAGTGTTGCTTAATATTTTGGAAACGAACATTGCAGTTTCAACATGGGGC
AAGCAAGGAAAATCACGTGAAAGATGTTTACAGAGAACAGTCTTGAGTGAACTTATATAT
CCCAAAGATTTTTTCGATATTATTGGAAGCCACAAGGATGTAACACGCTATAGAATAAGT
TTTGACGATGGAGTTTTGCAATTGCAACCAGAAATTAAAAAAATGCTGAATAGATTATAT
AATGAATACAAATATCTATGGGTAGATGACCTTGAAAATCAGATTGAAGCATTTGTACAA
AGTAATCCACTGACTGCAGATATAAGAGACAAATTGGTGTTATATGATAAAATAACAGCT
GAAATTTTAAAACTCAATCCAGTGATATGCTTTGGAATATTACTAATCGATCGACATAAA
ATGATTGAAGTGTTAGAAGCTCAATCAAAAATATGGAAGAAAATTCTCGGAAAAAAGCTT
TGTGAATATTACCGAATAATTCTTGACAGAAATGTTGACTTTATAAATGCACAAAATAAA
ATTCTTGCACGTGAGCTCAAAGACCTTGATGATTGTCGTATAGCAATGGATTGCATGAAA
GTTATTCGTGATAATTTCATTGATATTGATCAGAGTTTAAATCTTATTGAGCAAACTTAT
GCAGTTTTTCTGCAATTTAAATTGAATGTTCCTGCAGAAGATTTTGATCGAGTTGATGGA
CTTCGTTATCAATTCAATTCTATGCTTCAAGTATCAAAAGTAGTTGGTGAGAAAGTTCTC
AAAATGCAAGCACCATTATTGAATGAATTGACAGCTGGTGTTGAAAAGTTTAAGAATGAA
ATTATCACATTTGATAGAGAATTTATTGAGAAAGGACCAATGATTGAAGGCATACCAGCA
AAAGAAGCTAGTGAACGTGTTATTCTTTTTGAAACACGTCTAGATCAATTACAACATCAA
TATGAAGTATTTTCAAGCGGCGAAGCAATATTTGGTTTGCCTGTCAATGAGTATCCAATT
TTAACGAAACGCAAACGTGATATAAATTTTCTCAATCGTCTATACAAATTGTATCTTGAT
GTCATGTATACAGTTGATGAATATTTTACATTAATCTTCAATGAAGTTGATATGGAGAAA
ATTAATGCTGAAATTCAAGAATTTGTTAATAGATGTAGAACACTTCCAAAAGGCATGAAA
GACTGGCCTGCATTTATTGATTTGAAGAAAAAAATTGATGATTTTTATGAATGCTGTCCT
TTGATTGAACTGATGGCATCAAATGCAATGAAAGAAAGACATTGGGAAATGTTAGAAAAA
GTTGTCAAATATAGATTTAATATTGAAGATTCAAATTTCACTCTTGGCTACGTTATGAAA
GCTCCTCTTTTAGAGCATAAGGAAGAAATTGAAGAGATTTGTGTTGGTGCAAGTAAAGAA
CAGGATATTGAAATTAAATTACAAACAGTCATCAAAGATTGGAAGGAAATTAATATGCCA
TTAGCATTATTCAAAAATCGAGGTGAACTTCTTATAAAAGCAGCAGATTTAATAGAAATA
ATTTCTAAACTCGAAGATAGTTTAATGGTGATGAGTTCACTTTCTTCAAATCGTTTTAAT
GCACCATTTAAAAAAGATATTATGCTATGGCTTCATAAATTATCTGATACTAATGAAATT
CTTGAAAGATGGCTGCAAGTTCAAAGTCTATGGTTATACCTTGAAGCAGTTTTTGTTGGC
GGTGACATATCGAGACAATTACCACAAGAAGCGAAAAGATTTGGAAATATTGATAAAGGT
TGGATGAAAATCATGTATAAGACTCGAGATAATCCAAATGTTATCGAAATTTGTACTGGC
GATGATATAGTGTCGAATGGTCTGAAATTTCTTCTTGAACAACTTGAACTTTGTCAAAAA
TCACTCACTGTCTATCTCGAATCAAAGAGACTCATTTTTCCACGCTTCTTCTTCATTTCT
GATCCTGTTTTACTCGAAATTCTCGGACAAGCTTCAGATCCTAATTCAATTCAACCACAT
TTATTAAGTATATTTGATGGTGTTGCACGTGTAGGATTTGATAAAGAAAAGCCAGACACA
ATTATCTCAATGTATTCAAGTAATGGCGAAAAAATTCCTCTTTTAAATTCTGTTCGATGT
ATTGGACTTGTTGAAATTTGGATTGGAAAACTTTTAGAATCAGTACTTGAGACAGTTAAA
AATATTTTAGGAAACGTTGGCTCACAAATTGGAGAAGCAAAATTCGATTATAAAACATTT
CTCCCAACACTTTGTGCACAAGCACAATTAATTTGTATTCAACTTGTGTGGACAAAAGAT
GCAGAATATGCACTTAGCAACTGTAAAATTGACAGAAAAATAATGGCAAAAAAGAATATG
GAAATGCAAGATATGTTAAATTTTCTGGTCGATCAAACTGTTATGGATTTAACAAAACTT
CAAAGAATTTGTTGCGAAACACTTGTAACAATTCATGTTCATCAACGTGATATTTTTGAT
GAGCTTGTAAGAAACAAAGTGAAAACCGCAAATGACTTTGAATGGCAAAAACAAGCACGA
TTCTATTATGACTTTAATATGGAAGAAATTTTAGTAAAAATTACTGATATCGAATTTACT
TATCAAAATGAATATCTTGGTGTAACAGATCGTCTTGCAATAACACCACTCACTGATCGC
TGTTATATTACATTAGCACAAGCTATTGGCATGAATATGGGAGGTGCACCAGCTGGTCCG
GCTGGTACAGGCAAAACAGAGACAACAAAAGATATGGGAAGAGCATTAGGAAAACTTGTT
GTAGTTTTCAATTGCTCAGACCAAATGGACTTTAGAGGCTTGGGAAGAATTTTCAAAGGA
CTTGCTCAGTCTGGCTCATGGGGATGTTTTGATGAATTTAATAGAATTGAACTTCCTGTG
CTCTCAGTTGCTGCTCAGCAAATTTACATTGTGTTAAATGCAAGAAAAGAAAAGCAGAAA
AAATTTATTTTTAGTGATGGTGATACTGTGAAATTAAATTCTGAATTTGGACTTTTTATT
ACTATGAATCCTGGATATGCAGGTCGTCAAGAATTGCCTGAAAATTTGAAAATTCAATTT
CGTACATGTGCCATGATGATTCCAGATCGACAAATAATCATGAGAGTTAAACTTGCTAGT
TGCGGTTTTCGTGACAATGTCAAATTGGCTGCAAAGTTTTATACTCTGTATAAATTATGT
GAAGAACAACTTTCAAAGCAAGTCCATTATGATTTTGGTTTAAGAAATATTTTATCAGTA
TTGAGAACACTTGGTGCGGCAAAAAGAGCAGCAACAGGAAAATTGCAAGAAGATGAAATT
GTTATGCAAGTTTTACGTGATATGAATTTATCAAAATTAGTTGATGAAGATGAACCGCTC
TTCCTTTCACTGATTGCTGATCTGTTTCCAAGTCTTAAATTACAAACATCATCGCGAAAA
GATTTACAAACAGCAATATCTGAAGCAGTTACTAATTTAAAACTCATAAATCATCCAGCA
TGGAATTTAAAAGTTGTTCAACTTTATGAAACTTCTCTTGTTCGTCATGGACTTATGATT
CTAGGTCCGACAGGCGCTGGCAAATCAAAGTGCATTACAACACTTTTATCAAGTCTTACC
ATTCAAGGTTTGTCACATAAAGAATTGAGAATGAATCCAAAGGCAATTACTGCTCCACAA
ATGTTTGGTCGTCTTGATGTTACAACAAACGATTGGACAGATGGAATTTTCTCAGTTTTG
TGGAGAAGAACATTAAAATTCAAAACTGATTTTGTATGGCTAACACTTGATGGACCCGTC
GATGCAGTTTGGATTGAAAATTTAAACTCCGTTCTCGATGATAATAAAACATTGACACTT
GCTAATGGTGATCGTATTGTGATGAGTCCAAATTGTAAACTTGTCTTTGAACCTGATGCA
ATTGATAATGCATCACCTGCTACAGTTAGTCGAATGGGAATGGTGTTTATGAGTAGTTCA
GTTATGCCCTGGGATGTAATTCTTGATGGATGGCTGCTTTCAAGATCAGAGGATCAAGAA
AAAATTATTAGAAAATTCTTTAACAAAATTTATGATGATTTACATTTATTTGTACAAACG
AAATTATCTGCAAAAATGAAACTTCTTGAAGCAATTTATATTCGACAAACATGTGATATA
TTAATTGGACTTCTTGATGATAAAATCAAATATAGTGAAGCACATCTTGAGAGAATCTTT
TTATTTGCTCTGATGTGGTCACTCGGTGCAGTTCTCGAATTAGAAGATCGTGATAAAATG
GAACAATTTGTTTTGTCACATCCATCAAAAATGAAATGGCCAAATATTGAAAGAGGTGAA
TCAATATTTGAATTTCTTGTTGATCAAAATGGCAATTGGCAGCATTGGAATACACAAATA
GAAGAATATGTTTATCCATCAACTTATATACCTGATTATTCAAGTATTTTAGTTCCAAAT
GTTGACAATGTACGGACAGCATTTCTTATTGATACAATCGCTAAACAAAATAAATCTGTG
CTACTAATTGGTGAACAAGGAACTGCAAAAACTGTTATGATCAAAAGTTACATGTCTAAT
TATAATCCTGAAGAACATCTTTCAAAAAGTTTCAATTTCTCATCAGCAACCACACCAAAT
ATGTTTCAACGAATTATCGAGTCTTATGTTGAAAAGAGAATTGGATTAACTTATGGACCA
CCTCAAATGAGAAAAATGACAATTTTCATTGATGATATCAACATGCCAATAGTAAATGAG
TGGGGTGATCAAGTTACAAATGAAATTGTTCGACAATTAATGGAACAATCTGGTTTTTAT
TCTCTCGATCGTCCTGGTGATTTTATAACTGTTGTTGATATTCAATTACTTGCTGCTATG
ATTCATGCAGGAGGTGGCAGAAATGATATTCCAGCAAGATTAAAGAGACAATTTAATGTC
TTTAATTGTACATTACCAAGTAACAAATCAATGGATAAAATCTTTGGAGTCATTGGAAAT
GGCTACTTCTGTCCATCACGCTTTAATATGGAAATTGTTGATTTTATTTCAAGATTGATT
CCACTTACTCGCAAATTATGGCAACAAACTAAAACTAAAATGCTTCCAACTCCAGCTAAA
TTTCATTATATTTTTAATCTTCGTGATTTGTCACGTATTTGGGGTGGAATGTTAAAAATT
GAAAGTAAGCAATGTCAGAATATAGGAGCTTTATTAAAATTGTGGTCTCATGAATGCACT
AGAGTCATTGCTGATCGATTTATTAATACAGAAGATCGAGAATGGTTTAGTATGAAAATG
AAATCACTTGCCAGTGAAGAACTCAGAAGTGAATTCGAATATTTCCCTAAAGAAGACGTT
TATTTTGTTGATTTCTTAAGAGATGAACCTGATGAGCCAATTGAAGACGTTGGTGATGAT
GAAATGCTCTCACAATACTTTTTATATGAAGAAATTCCAAGCTTTGAAGTTGTTACTGAA
AGAATTTATAGTTTCATGACACAATATAACTTAGAAGTGAGAGGAAGTAAACTTGATTTG
GTACTTTTTCAAGATGGTCTTGTTCATTTAATGATTATCTCAAGAATTTTAAGAACATCA
AGAGGCAATGCACTTTTAGTTGGTGTTGGTGGAAGTGGAAAACAAAGTTTGACTAAGCTT
GCTTCATATATAGCAGGTTATAGATTTCATCAAGTGACACTCACACGAGCTTACAATCTT
AACAATTTTGCTGACGAATTTAGATTTCTATATCGTGTTGCTGGTGTGGCTGGTCAAGGA
ATTTGCTTTATTTTTACTGACAATGATATCAAAGATGAAAGTTTTCTTGAATATCTAAAT
AATGTTCTGAGCTCGGGCGAAATTGCTAATCTGTATCCAAAAGATGAATTAGATGAAATT
TTAAACGAACTTATACCAATTATGAAAAAGGCTGATCCAAAGAGAATTCCAACACAAGAA
AATCTCTATGATTTTTTTATATCACGTGCTCGCAATAATCTTCATATTGTTCTCTGCTTT
TCACCTATTGGAGAAAAGTTTAGAAATCGAGCATTGAAATTTCCTGGATTGATTTCTGGG
TGTACAATTGATTGGTTTCAAAAATGGCCTATGGATGCGTTAGTGTCAGTATCAACACAC
ATTCTCAAAGATTATTCTATAGAATGCACATATGAAGTGAAAAATGATTTAATTGAAATG
ATGGCATATGTCCATGACAATGTTTCAGAGACTTGTGTTGAATATTTTGAAAGATTCCGA
CGACAAGCAAGCGTTACACCAAAATCTTTCCTTTCATTTTTATCTGGCTATAAAGAAATT
TATAAGGAACGTCTTGCAACAATTCAAGATCAATCAATGAAAATGTCAAATGGTTTGGGA
AAATTAAAAGAAGCAGCAGAATCAATTGATATTTTAAAAAAAGAAATGGAAGTGAAAAAA
GTTGAAATTTCAATTGCTGAACAGAATGCACAAGAAGTTATTCAAAGTGTTGAAAAAAGT
CGACAAATCGCTGGTGCTGCACAAATTGAAGTGCAACAAAAGAAAGAAATTCAAGAAGTT
CTTGTTGAAAACATTAATAAAGCACGTGAAATAGCTGAAGTGGAATTAGAAAAGACATTA
CCACAATTGAAATTAGCAGAAGATGCATTGAAGACAATCAAGTCACAAGATATTGCAGTT
GTTCGTCGTTTAGGCAAGCCACCATATTTGATTACAGTCATTATGGATTGTGTTCTTATT
CTTTGTAAACTTCGTCTCGATCCTGTTAAAATGGATTTTGAAAAGAATTTCCTGAAAATG
TCTTGGAATGAATCAATAAAATTAATGAGTGATGTAAATTTTTTGAAAAAAGTTCGTGAT
TTTGAACGTGACACAATCGATGCCGAGACAATTGATCTTCTTCAACCTTACTTTAAATTT
CCTCAATACACACTTGAAGCAGCAATGGCTGCTTGTGGTCAAGTTGCAGGCTTACTTAAA
TGGACACGAGCAATGGCAGATTTCTATAAAGTGAATGTTAATGTGATTCCACTTAAAGCT
GATCTTGCAGTGAAACAAAATCAATTGAAAAGAGCAGAACATGAATTGTCTTTATTAGAG
GATGCATTAGAAAAGAAAAATGAAGAAGTAAAAGAAGCTGAAAGAGAGTTCAAAAAAGCA
AATGATGAATTACAAAAAGTAAAAGATGATGCAGCATTATTGCAAAGTAAATTAGATGCA
GCTCATGCAATGATCACAGGACTTTCGGATGAAAGAGTTCGTTGGACAGAACAGATTGTT
ATTTTTAAGAAAGAAATTCAAAAACTTGTTGGTGATGTTCTGATTTTATGTGGCTTCCTT
TCTTATACTGGTCCATTTAATCAACTCTTCAGAGCTTTATTACAAAATACATGGCAAAAA
GAGTTGAAAAGAAGAGAAATTCCATTTTCAATCAATATTGATGTTGTTGAACGTTTAACG
GATACAGCCACAATTGGTGAATGGAATTTGCAAGGTCTTCCTAATGATGAACTTTCAATT
CAAAATGGAATAATTGTTACACAAGCACATCGCTATCCATTACTTATCGATCCACAATCA
CAAGGCAAAGCATGGATTAAACAAAAAGAAAAGGAAAATTTGATTCTGACTACATTAAAT
CATAAATACTTTAGAAATCATCTTGAAGATGCAATTCAGCAAGGTTTACCAATGTTGATT
GAAGATATTGGTGAAGAACTTGATCCATGTATGGACAATGTTCTAGAGAAAAATTACATT
AAAATGGGAATGTCATATAAAGTAAAAGTCGGAGATAAAGAAATTGATATTCATAAAGAT
TTTAAACTTTTCATCACAACAAAATTGCCGAATCCAATGTATCCACCAGAGGTTGCTGCT
CGTACATCAATCATTGATTTCACTGTGACAATGAAGGGTTTAGAAGATCAATTATTAGGA
AAAGTAATTCTTTCAGAACGTCGTGAAATTGAAGCTGAACGTGTGCAATTAGATGTGGAT
GTGACAGCAAACAAAAAATTAAGCAAAGAACTTGAGGCCAATTTGCTTTATAAACTGTCA
ACAACAGAAGGAAGTTTACTTGATGATTTGAGTGTTATGGAAGTACTTAATACTAGTAAA
GCTAAAGCTATTGAAATTAAGGAAAAATTGGAATCAGCTGAAGAAACAAAAGCAACAATT
AATACAGCTCGTGAAGAATTTCGGCCTGTTGCTGCAAGAGGCAGTGTTTTGTATTTTCTT
ATAGTTAAAATGTCATTAGTTAACAACATGTATCAGACATCTCTTGTTCAATTTCTCGAA
AGATTTGACTATTCACTGAAAAATTCTGATAAAAGTCCCATCACATATAAACGCATCAAT
TCAATTATTGATTACCTTTCTTATGACATTTTCAAATACAAATCACGTGGATTATATGAA
ACTCATAAATTTCTCTTTGTGCTGCTCATGGCTCTTGATATTGATTTACAACGTGATCGA
ATATCATTTGAAGAATTTCAAACATTCATTAAAGGTGGTGCTGCACTCGACATTAATTCT
GTTTCCCCAAAACCTTGCAGATGGATCACTGACATCACATGGTTGAATCTTGTTCAATTG
TCTTTTGTTCCACTATTTCATACCATTTTGGATCAAATTAAAGCAAATGATAGAACATGG
AAGGCATGGTATGAAAAAAATGCACCAGAAGAAGAAATTTTTCCAGATGGTTACAATTCA
CTTGATGCATTCCGTAAGCTATTAATAATTAGATCGTTCTGTTTGGATCGAACATTGTCA
CAAAGCAGAAAATACATTGCATCATCACTTGGTGAGAAATTTGCTGATCCAGTTGTGCTC
AATTATGAAATTATGTTAGAAGAAAGTCGTCCTTTGACGCCAATCATTTGTTTCCTTTCG
ATGGGTTCTGATCCAACACCTTCAATTGAATCGCTGGCAAAGAAAAATCAAATAAAAGTT
TCTGCTATTTCAATGGGTCAAGGTCAAGAAGTACATGCTAGAAAATTAATGGAGAAATCA
CTCAAAGAAGGATCTTGGGTATTATTACAAAATTGTCATCTTGGTCTTGAATATATGAAT
GAATTGACACAACAATTAATGGAATTAGAAAGAATTGGTGAAGGTTATGACGAAATGTTT
AGATTATGGATTACAACAGAGGTTCATCCTAATTTTCCAATAACAATGCTACAAATGGCA
ATTAAATTTACTAATGAACCACCATCTGGCATGAGAGCTGGCCTAAAAAGAACATATAAT
TCAATGAGCATGGAACTATTTGATTATAGTGATTCACCACTTTACTTGCCTTTAATTTAT
AGCACTTCGACTTTACATACAACTGTACAAGAGAGAAGAAAATTTGGTGCATTAGGTTGG
AATATTCCTTATGAATTCAATTCATCCGATTGGCTTGCAAGTTGTTTGTTTATGCAAAAG
CATTTAGAAGAAGTTGATACTGATATAAGTTGGAAAACTGTAAATTATATGATCGGCGAA
GTTCAATATGGTGGACGTGTAACTGATGATTATGACAAACGATTACTTAACTGTCTTGCA
AGGACTTATTTCAATGATAAAATGTTTGATGAAGATTTTGAGTTCTATAAAGGCTACAAA
ATTGTTGTAAGAAAAACAACTGAAGAATATATGGAATATTTCGATACAATGTCTACAACC
GACCCACCAAATTTGTATGGCCTCCACGCAAACGCAGACATTACTTTTCAAACAAATAAA
ACGAAAGAAATTCTCGACACAATTATTTCTGTGCAACCTAAAGAATCATCGGGTGGTGCG
GGTGAAACGAGAGAGGCTGCAGTAACAAGACAAGTTAAAGATATGCAAGCACGTTTTCCA
CCATTATATGATGAATTTGAAGTAAAACAAAGGTTGACAAAAGAAATTACACCTATGAAT
ATTTTCCTACGTCAAGAAATTGATAGAATGCAAAAAATTATCAAATTAGTTAAATCAACT
CTGACAGATTTACTTTTGGCAATTGAAGGCACAATAATTATGAGTGAAACTTTACGTGAT
GCATTCGATAATATTTATGATGCGCGTGTGCCAACCATTTGGAAGCGCGGCAGCTGGCTT
GCATCGACACTTGGTTTCTGGTTTAGTGAATTAATTGAGCGCAATGTGCAATTCTCAGAT
TGGTGTTTTAAAGTTCGACCGAAATCATATTGGATGACTGGATTTTTCAATCCTCAAGGT
TTTCTAACTGCAATGCGACAAGAAACTGCTCGTGCAAATGTTGGTTGGGCTCTTGATAAA
GTGATTCTTCAAAATGAAGTTATGAAATTTTCTTTGAATGATATTAAAGATTATCCACGA
TCGGGAGTTTATGTTCATGGTCTTTTTCTTGATGGTGCTGGTTGGAATCGTCGTGAAAAT
CGATTAATCGAAGCAACGAATAAAATTCTTTACACACAAATGCCAATCATTCGAATTTAT
GCGAATAATGTATTTGAAGGCAAAGGTCAAAATCTCTATGAATGTCCCGTATATAAAAAA
GCAAATCGAACAGATTTAAATTTCATCACTGCACTTCACTTGGCAACAAAAGAACATCCT
GATCATTGGATTCTTCGAGGTGTTGCACTTCTTTGTGATAATAAATAA

>g5598.t1 Gene=g5598 Length=4615
MSKKPDIDPEQDIKHLLKTTDVSATIKTIARLHRPTLTVETKEERREKLLLKSKNDRSVR
ASKTENNERYILEVASMFFNIHEDTLFQSYIDSQDNIDLLKNIFERNGSLKILIQYQLED
APNLESGRFDPKLKYKQVMQGIFSSGRGKKILGECVAVYRLDNSTFQDMKNIENAFYFMP
LPTCQNTIESFYEFFLKVLQPTLQVFKDYGECTEREKQNFLYGLSLFLQFLKSTQENLAT
CRIEFPFDNDFYKGFLLNEIRIKEASKNREHVSKCEAEFTHWMNQIRVAISQGTQLIQEN
VDHGPLKELEHWRKMLAKFCHVSEFVKSKMFNNYYLCLKLSKSKILLQWMKVDEDLRKLL
VEATDNVRFLQSIQEYWNPLYKCEPNELCHHIKLLLKILHGVYSTSNFFNTSLRITSFLS
KVSNQIVNTSRKYLTSNFTKTIWTEDMKILVKKINECKNMVEIYRNAFSSMVDEIVANGE
KPLECSPSYLFDRLELFINRLCKIREVMEICLRYQVLNQIRIGGMELFSNKIYNGFEKIA
KTSYDPLEYRIKQFEQDFVDFQVLVSTTEVEMEQFLIHYLEEIPTVESKILALKRFEKLD
LMCLGYGKRYISIAESLLKEMEDIKDKYNEERAKPPMERGIPPYITRIKWARTLHKKIQE
PLKYLTKYECVYKHKVTQQCVKMYNFLTPILDGYETTTHKAWYTYVDQIRSRLECPILKK
HAETNHYIINLNPYVLQVVKECESMMKFGLQVPKSVAILTYCKDRVFDAYNILKMLVQRN
NLLRKSIKPIFLPLMRIHLIKLERIFAPAFSQITWLTFDIENYFINIARILEPLEEFVKT
INDINDAQIETLLEHIGNMVLIHLPEQAVTPEEFLDMNLEYRKNVEKIIQIKSQAAEKST
VELINKFIEKAEMVPYYDNSGKYQLPYSKIDESNRRFEEIKPINKFDWLSFDKIFKAVGY
ATPEDNEINVFKDFDGLHYDVTLLHIDCMELFAYYNHRVISVLAKCSKRSMEILKTRSYL
TSVIRTYDCDNRESEPLLITNIELKIPDFKLVPDITKIQYFYDQVLLNILETNIAVSTWG
KQGKSRERCLQRTVLSELIYPKDFFDIIGSHKDVTRYRISFDDGVLQLQPEIKKMLNRLY
NEYKYLWVDDLENQIEAFVQSNPLTADIRDKLVLYDKITAEILKLNPVICFGILLIDRHK
MIEVLEAQSKIWKKILGKKLCEYYRIILDRNVDFINAQNKILARELKDLDDCRIAMDCMK
VIRDNFIDIDQSLNLIEQTYAVFLQFKLNVPAEDFDRVDGLRYQFNSMLQVSKVVGEKVL
KMQAPLLNELTAGVEKFKNEIITFDREFIEKGPMIEGIPAKEASERVILFETRLDQLQHQ
YEVFSSGEAIFGLPVNEYPILTKRKRDINFLNRLYKLYLDVMYTVDEYFTLIFNEVDMEK
INAEIQEFVNRCRTLPKGMKDWPAFIDLKKKIDDFYECCPLIELMASNAMKERHWEMLEK
VVKYRFNIEDSNFTLGYVMKAPLLEHKEEIEEICVGASKEQDIEIKLQTVIKDWKEINMP
LALFKNRGELLIKAADLIEIISKLEDSLMVMSSLSSNRFNAPFKKDIMLWLHKLSDTNEI
LERWLQVQSLWLYLEAVFVGGDISRQLPQEAKRFGNIDKGWMKIMYKTRDNPNVIEICTG
DDIVSNGLKFLLEQLELCQKSLTVYLESKRLIFPRFFFISDPVLLEILGQASDPNSIQPH
LLSIFDGVARVGFDKEKPDTIISMYSSNGEKIPLLNSVRCIGLVEIWIGKLLESVLETVK
NILGNVGSQIGEAKFDYKTFLPTLCAQAQLICIQLVWTKDAEYALSNCKIDRKIMAKKNM
EMQDMLNFLVDQTVMDLTKLQRICCETLVTIHVHQRDIFDELVRNKVKTANDFEWQKQAR
FYYDFNMEEILVKITDIEFTYQNEYLGVTDRLAITPLTDRCYITLAQAIGMNMGGAPAGP
AGTGKTETTKDMGRALGKLVVVFNCSDQMDFRGLGRIFKGLAQSGSWGCFDEFNRIELPV
LSVAAQQIYIVLNARKEKQKKFIFSDGDTVKLNSEFGLFITMNPGYAGRQELPENLKIQF
RTCAMMIPDRQIIMRVKLASCGFRDNVKLAAKFYTLYKLCEEQLSKQVHYDFGLRNILSV
LRTLGAAKRAATGKLQEDEIVMQVLRDMNLSKLVDEDEPLFLSLIADLFPSLKLQTSSRK
DLQTAISEAVTNLKLINHPAWNLKVVQLYETSLVRHGLMILGPTGAGKSKCITTLLSSLT
IQGLSHKELRMNPKAITAPQMFGRLDVTTNDWTDGIFSVLWRRTLKFKTDFVWLTLDGPV
DAVWIENLNSVLDDNKTLTLANGDRIVMSPNCKLVFEPDAIDNASPATVSRMGMVFMSSS
VMPWDVILDGWLLSRSEDQEKIIRKFFNKIYDDLHLFVQTKLSAKMKLLEAIYIRQTCDI
LIGLLDDKIKYSEAHLERIFLFALMWSLGAVLELEDRDKMEQFVLSHPSKMKWPNIERGE
SIFEFLVDQNGNWQHWNTQIEEYVYPSTYIPDYSSILVPNVDNVRTAFLIDTIAKQNKSV
LLIGEQGTAKTVMIKSYMSNYNPEEHLSKSFNFSSATTPNMFQRIIESYVEKRIGLTYGP
PQMRKMTIFIDDINMPIVNEWGDQVTNEIVRQLMEQSGFYSLDRPGDFITVVDIQLLAAM
IHAGGGRNDIPARLKRQFNVFNCTLPSNKSMDKIFGVIGNGYFCPSRFNMEIVDFISRLI
PLTRKLWQQTKTKMLPTPAKFHYIFNLRDLSRIWGGMLKIESKQCQNIGALLKLWSHECT
RVIADRFINTEDREWFSMKMKSLASEELRSEFEYFPKEDVYFVDFLRDEPDEPIEDVGDD
EMLSQYFLYEEIPSFEVVTERIYSFMTQYNLEVRGSKLDLVLFQDGLVHLMIISRILRTS
RGNALLVGVGGSGKQSLTKLASYIAGYRFHQVTLTRAYNLNNFADEFRFLYRVAGVAGQG
ICFIFTDNDIKDESFLEYLNNVLSSGEIANLYPKDELDEILNELIPIMKKADPKRIPTQE
NLYDFFISRARNNLHIVLCFSPIGEKFRNRALKFPGLISGCTIDWFQKWPMDALVSVSTH
ILKDYSIECTYEVKNDLIEMMAYVHDNVSETCVEYFERFRRQASVTPKSFLSFLSGYKEI
YKERLATIQDQSMKMSNGLGKLKEAAESIDILKKEMEVKKVEISIAEQNAQEVIQSVEKS
RQIAGAAQIEVQQKKEIQEVLVENINKAREIAEVELEKTLPQLKLAEDALKTIKSQDIAV
VRRLGKPPYLITVIMDCVLILCKLRLDPVKMDFEKNFLKMSWNESIKLMSDVNFLKKVRD
FERDTIDAETIDLLQPYFKFPQYTLEAAMAACGQVAGLLKWTRAMADFYKVNVNVIPLKA
DLAVKQNQLKRAEHELSLLEDALEKKNEEVKEAEREFKKANDELQKVKDDAALLQSKLDA
AHAMITGLSDERVRWTEQIVIFKKEIQKLVGDVLILCGFLSYTGPFNQLFRALLQNTWQK
ELKRREIPFSINIDVVERLTDTATIGEWNLQGLPNDELSIQNGIIVTQAHRYPLLIDPQS
QGKAWIKQKEKENLILTTLNHKYFRNHLEDAIQQGLPMLIEDIGEELDPCMDNVLEKNYI
KMGMSYKVKVGDKEIDIHKDFKLFITTKLPNPMYPPEVAARTSIIDFTVTMKGLEDQLLG
KVILSERREIEAERVQLDVDVTANKKLSKELEANLLYKLSTTEGSLLDDLSVMEVLNTSK
AKAIEIKEKLESAEETKATINTAREEFRPVAARGSVLYFLIVKMSLVNNMYQTSLVQFLE
RFDYSLKNSDKSPITYKRINSIIDYLSYDIFKYKSRGLYETHKFLFVLLMALDIDLQRDR
ISFEEFQTFIKGGAALDINSVSPKPCRWITDITWLNLVQLSFVPLFHTILDQIKANDRTW
KAWYEKNAPEEEIFPDGYNSLDAFRKLLIIRSFCLDRTLSQSRKYIASSLGEKFADPVVL
NYEIMLEESRPLTPIICFLSMGSDPTPSIESLAKKNQIKVSAISMGQGQEVHARKLMEKS
LKEGSWVLLQNCHLGLEYMNELTQQLMELERIGEGYDEMFRLWITTEVHPNFPITMLQMA
IKFTNEPPSGMRAGLKRTYNSMSMELFDYSDSPLYLPLIYSTSTLHTTVQERRKFGALGW
NIPYEFNSSDWLASCLFMQKHLEEVDTDISWKTVNYMIGEVQYGGRVTDDYDKRLLNCLA
RTYFNDKMFDEDFEFYKGYKIVVRKTTEEYMEYFDTMSTTDPPNLYGLHANADITFQTNK
TKEILDTIISVQPKESSGGAGETREAAVTRQVKDMQARFPPLYDEFEVKQRLTKEITPMN
IFLRQEIDRMQKIIKLVKSTLTDLLLAIEGTIIMSETLRDAFDNIYDARVPTIWKRGSWL
ASTLGFWFSELIERNVQFSDWCFKVRPKSYWMTGFFNPQGFLTAMRQETARANVGWALDK
VILQNEVMKFSLNDIKDYPRSGVYVHGLFLDGAGWNRRENRLIEATNKILYTQMPIIRIY
ANNVFEGKGQNLYECPVYKKANRTDLNFITALHLATKEHPDHWILRGVALLCDNK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
42 g5598.t1 Coils Coil Coil 611 634 -
39 g5598.t1 Coils Coil Coil 1360 1380 -
40 g5598.t1 Coils Coil Coil 3202 3229 -
41 g5598.t1 Coils Coil Coil 3422 3477 -
38 g5598.t1 Coils Coil Coil 3776 3806 -
23 g5598.t1 Gene3D G3DSA:1.20.140.100 - 1543 1711 5.0E-45
24 g5598.t1 Gene3D G3DSA:3.20.180.20 - 1712 1808 3.9E-22
37 g5598.t1 Gene3D G3DSA:1.20.58.1120 - 1812 1955 2.6E-36
30 g5598.t1 Gene3D G3DSA:3.40.50.300 - 1956 2107 3.1E-67
29 g5598.t1 Gene3D G3DSA:1.10.8.710 - 2108 2217 5.9E-34
31 g5598.t1 Gene3D G3DSA:3.40.50.300 - 2220 2461 6.6E-73
28 g5598.t1 Gene3D G3DSA:1.10.472.130 - 2463 2540 2.9E-6
33 g5598.t1 Gene3D G3DSA:3.40.50.300 - 2556 3105 3.3E-192
26 g5598.t1 Gene3D G3DSA:1.20.920.30 - 2727 2939 3.3E-192
27 g5598.t1 Gene3D G3DSA:1.20.920.20 - 3167 3519 2.9E-82
35 g5598.t1 Gene3D G3DSA:3.40.50.11510 - 3559 3726 2.3E-61
36 g5598.t1 Gene3D G3DSA:1.10.8.1220 - 3807 3897 7.1E-9
32 g5598.t1 Gene3D G3DSA:3.40.50.300 - 4019 4145 3.9E-36
34 g5598.t1 Gene3D G3DSA:1.10.8.720 - 4146 4309 9.0E-48
25 g5598.t1 Gene3D G3DSA:1.20.1270.280 - 4313 4477 1.7E-13
22 g5598.t1 Gene3D G3DSA:3.10.490.20 - 4478 4615 3.3E-14
13 g5598.t1 PANTHER PTHR10676:SF318 MALE FERTILITY FACTOR KL3 100 4615 0.0
14 g5598.t1 PANTHER PTHR10676 DYNEIN HEAVY CHAIN FAMILY PROTEIN 100 4615 0.0
12 g5598.t1 Pfam PF08385 Dynein heavy chain, N-terminal region 1 272 823 1.2E-99
5 g5598.t1 Pfam PF08393 Dynein heavy chain, N-terminal region 2 1403 1803 2.8E-120
3 g5598.t1 Pfam PF12774 Hydrolytic ATP binding site of dynein motor region 1941 2269 4.9E-142
9 g5598.t1 Pfam PF17852 Dynein heavy chain AAA lid domain 2423 2537 5.6E-19
7 g5598.t1 Pfam PF12775 P-loop containing dynein motor region 2552 2726 1.3E-62
8 g5598.t1 Pfam PF17857 AAA+ lid domain 2760 2837 3.6E-15
2 g5598.t1 Pfam PF12780 P-loop containing dynein motor region D4 2918 3180 1.1E-88
1 g5598.t1 Pfam PF12777 Microtubule-binding stalk of dynein motor 3194 3538 1.8E-34
4 g5598.t1 Pfam PF12781 ATP-binding dynein motor region 3567 3786 1.9E-82
11 g5598.t1 Pfam PF03028 Dynein heavy chain region D6 P-loop domain 4031 4144 5.2E-37
10 g5598.t1 Pfam PF18198 Dynein heavy chain AAA lid domain 4158 4312 1.3E-48
6 g5598.t1 Pfam PF18199 Dynein heavy chain C-terminal domain 4318 4612 7.0E-92
19 g5598.t1 SMART SM00382 AAA_5 1974 2118 0.56
21 g5598.t1 SMART SM00382 AAA_5 2254 2408 8.4
20 g5598.t1 SMART SM00382 AAA_5 2576 2724 0.5
16 g5598.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1958 2168 1.57E-23
15 g5598.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2189 2397 2.41E-14
17 g5598.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2574 2836 1.11E-16
18 g5598.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2919 3191 5.07E-25

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5598/g5598.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5598.t1.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007018 microtubule-based movement BP
GO:0030286 dynein complex CC
GO:0005524 ATP binding MF
GO:0008569 minus-end-directed microtubule motor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values