General information for g5631.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable aconitate hydratase, mitochondrial.
Parent gene
- The parent gene g5631 is located on chr_2: 10734995..10744435 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5631 | g5631.t7 | TSS | g5631.t7 | 10732477 | 10732477 |
| chr_2 | g5631 | g5631.t7 | isoform | g5631.t7 | 10733138 | 10734162 |
| chr_2 | g5631 | g5631.t7 | exon | g5631.t7.exon1 | 10733138 | 10734162 |
| chr_2 | g5631 | g5631.t7 | cds | g5631.t7.CDS1 | 10733205 | 10734161 |
| chr_2 | g5631 | g5631.t7 | TTS | g5631.t7 | NA | NA |
Sequences
>g5631.t7 Gene=g5631 Length=1025
ATAGGCGAAACGAGCGGCTTTGTATGCCGTTGATGCACAACAAAGATGGTTCCATGCAAG
TTGTGCAATGAGCAGCAAAGTTGCTTTGTCAAAATTCGATGAGAATGTCTACTTGCCATA
TGAGAAACTCGTTGAACGTCTAAATATTGTCAAGAAGCGATTGAATCGTCCATTAACAAT
GTCAGAAAAAGTTTTATATTCACATCTCGATGATCCAGCAAATCAAGACATTGAACGTGG
TGTTTCTTATTTGCGCTTGAGACCTGATCGAGTCGCTTGTCAAGATGCCACCGCCCAAAT
GGCTATGATGCAATTCATTTCCTCCGGATTGAAACGTGTCGCTGTTCCAACAACAATTCA
TTGCGATCATTTGATTGAAGCACAAATTGGAGGCGATCAAGATTTAGCTCGCGCAAAGAA
ACTCAATGAAGAAGTTTATCGTTTCTTAGAGACTGCAAGTGCCAAGTATGGAGTTGGTTT
CTGGAAGCCTGGTTCAGGTATTATTCATCAAATCATTCTTGAGAATTACGCATTCCCTGG
TCTTTTGATGATCGGTACTGACTCTCATACACCAAATGGAGGCGGACTTGGTGGCCTTTG
CATTGGTGTCGGTGGCGCTGATGCTGTTGATGTTATGGCTAATATTCCGTGGGAATTGAA
ATGTCCAAAAGTTATTGGTGTTCATTTAACGGGAAAAATTGGTGGTTGGACTTCACCAAA
GGATGTTATCTTGAAGGTTGCTGATATTTTGACTGTAAAGGGAGGCACTGGTGCAATTGT
TGAATATCATGGTAAAGGTGTTGATTCAATTTCATGCACAGGTATGGCAACAATCTGTAA
TATGGGTGCTGAAATTGGTGCAACCACTTCAACTTTCCCATTCAATTCAAGAATGGCTGC
TTATTTGAAATCAACTCTTCGTGATGGCATTGCTGCCGAAGCTGCCAAATTCCAAACTCA
ATTGCTCCAAGCAGATGAAGGTGCACAATATGACGAGCTCATTGAAATTAATTTGGATAC
ATTGG
>g5631.t7 Gene=g5631 Length=319
MSSKVALSKFDENVYLPYEKLVERLNIVKKRLNRPLTMSEKVLYSHLDDPANQDIERGVS
YLRLRPDRVACQDATAQMAMMQFISSGLKRVAVPTTIHCDHLIEAQIGGDQDLARAKKLN
EEVYRFLETASAKYGVGFWKPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIG
VGGADAVDVMANIPWELKCPKVIGVHLTGKIGGWTSPKDVILKVADILTVKGGTGAIVEY
HGKGVDSISCTGMATICNMGAEIGATTSTFPFNSRMAAYLKSTLRDGIAAEAAKFQTQLL
QADEGAQYDELIEINLDTL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g5631.t7 | Gene3D | G3DSA:3.30.499.10 | Aconitase | 2 | 202 | 0 |
| 12 | g5631.t7 | Gene3D | G3DSA:3.40.1060.10 | Aconitase | 203 | 316 | 0 |
| 2 | g5631.t7 | PANTHER | PTHR43160 | ACONITATE HYDRATASE B | 2 | 319 | 0 |
| 3 | g5631.t7 | PANTHER | PTHR43160:SF3 | ACONITATE HYDRATASE, MITOCHONDRIAL | 2 | 319 | 0 |
| 8 | g5631.t7 | PRINTS | PR00415 | Aconitase family signature | 113 | 126 | 0 |
| 9 | g5631.t7 | PRINTS | PR00415 | Aconitase family signature | 136 | 144 | 0 |
| 5 | g5631.t7 | PRINTS | PR00415 | Aconitase family signature | 156 | 169 | 0 |
| 7 | g5631.t7 | PRINTS | PR00415 | Aconitase family signature | 170 | 185 | 0 |
| 4 | g5631.t7 | PRINTS | PR00415 | Aconitase family signature | 232 | 245 | 0 |
| 6 | g5631.t7 | PRINTS | PR00415 | Aconitase family signature | 246 | 259 | 0 |
| 1 | g5631.t7 | Pfam | PF00330 | Aconitase family (aconitate hydratase) | 40 | 319 | 0 |
| 10 | g5631.t7 | SUPERFAMILY | SSF53732 | Aconitase iron-sulfur domain | 7 | 319 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5631/g5631.t7; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5631.t7.fa.iupred3.txt does not exist
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
