General information for g5647.t47
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g5647 is located on chr_2: 10882166..10884280 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5647 | g5647.t47 | TSS | g5647.t47 | 10879963 | 10879963 |
| chr_2 | g5647 | g5647.t47 | isoform | g5647.t47 | 10880642 | 10882810 |
| chr_2 | g5647 | g5647.t47 | exon | g5647.t47.exon1 | 10880642 | 10882646 |
| chr_2 | g5647 | g5647.t47 | cds | g5647.t47.CDS1 | 10880642 | 10882646 |
| chr_2 | g5647 | g5647.t47 | exon | g5647.t47.exon2 | 10882700 | 10882810 |
| chr_2 | g5647 | g5647.t47 | cds | g5647.t47.CDS2 | 10882700 | 10882710 |
| chr_2 | g5647 | g5647.t47 | TTS | g5647.t47 | 10882977 | 10882977 |
Sequences
>g5647.t47 Gene=g5647 Length=2116
ATGAATATGAACAAGGGTGATAATAAAGAGAAAATGGGAGGAAAATTGACTCATGTTGAA
TTAGAAAGTACTGAAGGTGGAAAAGAAAAGTTGACTCATGTTGAAATACAAGGCACTGGA
GGTGGAAAAGGAAGTGATGAAAAGTGTCCAGAAATGAAAGGTGATGTTCAAAAAACAAGC
TCTGAAAGCAAAATTCAAGGTCATTCTGGTATGATGCAAGGAATGAAAGGTGGCTCACAA
GGAAAATGTCCAACAAGAGAATGCAAGGAATTAAAAGGAAAAGTTGAGAAAGCTAGCTCA
GAACATAAGGATAAGAATCAAGCTCATTCCGAATTTATGAAAGAAATGGAGAAAAAAGGA
AACAATGGAAAATGTCCAGCTCGTGATTGTCCTAAAATGAAGGAAAAGTTTCAAAAATTA
AGCTCTGACATGATGGGCAAGGATAAAGCTCATTCTGATATCAAAGAAGAAATGAATAAA
GGAAAAGATGAAAAATGTCCAGGACGAGAATGCCCAGAATTAAAAGGAAAAGTCGAGAAA
GCAAAGTCTGAAGGAAACATTCAAGCTCATTCTGATATGATGCAAGGAAGAGGAAAAGGC
ACAGAAGGAAAATGTCCTGCAAGAGAATGTCCAGAATTGAAGGAAAAAGTCGAGAAAGCA
AGTTCTGAGCATAAAGACAAGCAACGAGCTCATTCCGAATGTATGAAAGAAATGGACAAA
AAAGGAACTGGTGGAAAATGCCCAGCCCGTGATTGTCCTGAATTAAAAGAAGACTTTCAA
AAAGTAAGTTCAGAAAAGATGAACAAAGAAAAAGCTCATTCAGATTTCAAACAAGAAATG
GAAAAAGGAAGAGATGACAAATGTAAAGCTCGTGAATGTCCAGAATTAAAATTAAATGTT
GAGAAAGCCAACACTCAAGGAAAAGATCAACATCAAGCTCATACAGAATTTATGCAAGGA
ATGGGAAAGGGCACAGAAGGAAAATGCCCTGGTAAAGATTGCCCAGAAATGAAAGGAAAG
ATTGAAGGCCAGCATCATGAACAGCACCATGGACAACATCATGGAGAGCATCATGGAGAA
CACCATGGACAACATCATGGACAACATCATGGAGAGCATCATGGACAACATCATGGAGAG
CATCATGGACAACATCATGGACAACATCATGGAGAACACCATGGACAACATCATGAACAG
CATCATGGACAACATCATGGAGAACACCATGAACAACATCATGGAGAACACCATGGACAA
CATCATGGAGAGCATCATAAGCAAAGTAGTGATCATCATATTGAAATGAAAAGTCCATCA
GTAGATTTTGATAATTTGAAGAAAGTAATTGAAGAAAGATCTAGTGAGGGAAAAGGACAT
TCTGATTTTAAGCACGATGTTGAAAAAGGAGGTTCAAAAAGAATAGGAGAAGAAGATCAT
CAAGAATTAGGATCTGAAGGTAAAGGTCATGGCAAGCAACATTCTGATACTAGAAAGCAC
ATGCAGGATCTTAGCTATGGTCATGGTAAGGAACATTCGGAATCACAAAAAGGCGAACAT
ATGGGTTTTCATCATAGAGGACATGGCAAGGAACATTTTGACTCTAAAAGAGGCGATAAA
ATGGATTCTGAAAGAAAACGTCATGAAAAAGAATGCCGTGAAAAAGAATGTCGTCATCAT
CATAAGAAACAAGGAAAGGACGTAAAATGGAGAGACTGGAGTGGTGGTGAATTAGCTGAA
AGACGTCCACACTTCCCTTGGAATTGGATGCAAAATTATCATCGTCGTCGTCCAGCAAAA
ACACCTGACGACTTTGAAGTTTCTCTCAACGTTGAAGCATTCAAACCTGAGGATATTTCT
GTAAAGGTCAGAGGTCGTGAAATATTGATCGAAGCTAAACATGAAGAAAAGGAAGAAGAT
GTTGGATTTGTATCTCGTCATTTTACTCGCAGATATCTTCTTTCTGATGAATTTGATGTT
GAATCAGTTGCAACATTCTTAACACACTCATCGTGAAGTTCCTATTCAACATGTTGCTTC
AGAATCTGATTCTTCTTCTGATGAAGATGAACACCTTGAGCATATGGTCAAGGAACCGCA
ATCCTATGGAGTTTAA
>g5647.t47 Gene=g5647 Length=671
MNMNKGDNKEKMGGKLTHVELESTEGGKEKLTHVEIQGTGGGKGSDEKCPEMKGDVQKTS
SESKIQGHSGMMQGMKGGSQGKCPTRECKELKGKVEKASSEHKDKNQAHSEFMKEMEKKG
NNGKCPARDCPKMKEKFQKLSSDMMGKDKAHSDIKEEMNKGKDEKCPGRECPELKGKVEK
AKSEGNIQAHSDMMQGRGKGTEGKCPARECPELKEKVEKASSEHKDKQRAHSECMKEMDK
KGTGGKCPARDCPELKEDFQKVSSEKMNKEKAHSDFKQEMEKGRDDKCKARECPELKLNV
EKANTQGKDQHQAHTEFMQGMGKGTEGKCPGKDCPEMKGKIEGQHHEQHHGQHHGEHHGE
HHGQHHGQHHGEHHGQHHGEHHGQHHGQHHGEHHGQHHEQHHGQHHGEHHEQHHGEHHGQ
HHGEHHKQSSDHHIEMKSPSVDFDNLKKVIEERSSEGKGHSDFKHDVEKGGSKRIGEEDH
QELGSEGKGHGKQHSDTRKHMQDLSYGHGKEHSESQKGEHMGFHHRGHGKEHFDSKRGDK
MDSERKRHEKECREKECRHHHKKQGKDVKWRDWSGGELAERRPHFPWNWMQNYHRRRPAK
TPDDFEVSLNVEAFKPEDISVKVRGREILIEAKHEEKEEDVGFVSRHFTRRYLLSDEFDV
ESVATFLTHSS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g5647.t47 | CDD | cd06526 | metazoan_ACD | 598 | 669 | 2.76124E-22 |
| 8 | g5647.t47 | Coils | Coil | Coil | 88 | 108 | - |
| 9 | g5647.t47 | Coils | Coil | Coil | 210 | 230 | - |
| 7 | g5647.t47 | Gene3D | G3DSA:2.60.40.790 | - | 593 | 670 | 5.0E-17 |
| 17 | g5647.t47 | MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 67 | - |
| 14 | g5647.t47 | MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 186 | - |
| 16 | g5647.t47 | MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 249 | - |
| 12 | g5647.t47 | MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 249 | - |
| 15 | g5647.t47 | MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 283 | - |
| 13 | g5647.t47 | MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 547 | - |
| 18 | g5647.t47 | MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 366 | - |
| 11 | g5647.t47 | MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 547 | - |
| 2 | g5647.t47 | PANTHER | PTHR45640 | HEAT SHOCK PROTEIN HSP-12.2-RELATED | 524 | 668 | 7.3E-20 |
| 5 | g5647.t47 | PRINTS | PR00299 | Alpha crystallin signature | 599 | 619 | 2.3E-6 |
| 3 | g5647.t47 | PRINTS | PR00299 | Alpha crystallin signature | 621 | 634 | 2.3E-6 |
| 4 | g5647.t47 | PRINTS | PR00299 | Alpha crystallin signature | 636 | 655 | 2.3E-6 |
| 1 | g5647.t47 | Pfam | PF00011 | Hsp20/alpha crystallin family | 600 | 664 | 3.2E-12 |
| 19 | g5647.t47 | ProSiteProfiles | PS01031 | Small heat shock protein (sHSP) domain profile. | 587 | 671 | 14.193 |
| 6 | g5647.t47 | SUPERFAMILY | SSF49764 | HSP20-like chaperones | 587 | 665 | 3.49E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5647/g5647.t47; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5647.t47.fa.iupred3.txt does not exist
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
