General information for g5647.t51
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g5647 is located on chr_2: 10882166..10884280 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5647 | g5647.t51 | isoform | g5647.t51 | 10881515 | 10882810 |
| chr_2 | g5647 | g5647.t51 | exon | g5647.t51.exon1 | 10881515 | 10881856 |
| chr_2 | g5647 | g5647.t51 | exon | g5647.t51.exon2 | 10882006 | 10882810 |
| chr_2 | g5647 | g5647.t51 | cds | g5647.t51.CDS1 | 10882142 | 10882810 |
| chr_2 | g5647 | g5647.t51 | TTS | g5647.t51 | 10882977 | 10882977 |
| chr_2 | g5647 | g5647.t51 | TSS | g5647.t51 | NA | NA |
Sequences
>g5647.t51 Gene=g5647 Length=1147
GAATGTCCAGAATTAAAATTAAATGTTGAGAAAGCCAACACTCAAGGAAAAGATCAACAT
CAAGCTCATACAGAATTTATGCAAGGAATGGGAAAGGGCACAGAAGGAAAATGCCCTGGT
AAAGATTGCCCAGAAATGAAAGGAAAGATTGAAGGCCAGCATCATGAACAGCACCATGGA
CAACATCATGGAGAGCATCATGGAGAACACCATGGACAACATCATGGACAACATCATGGA
GAGCATCATGGACAACATCATGGAGAGCATCATGGACAACATCATGGACAACATCATGGA
GAACACCATGGACAACATCATGAACAGCATCATGGACAACATTGAGGGAAAAGGACATTC
TGATTTTAAGCACGATGTTGAAAAAGGAGGTTCAAAAAGAATAGGAGAAGAAGATCATCA
AGAATTAGGATCTGAAGGTAAAGGTCATGGCAAGCAACATTCTGATACTAGAAAGCACAT
GCAGGATCTTAGCTATGGTCATGGTAAGGAACATTCGGAATCACAAAAAGGCGAACATAT
GGGTTTTCATCATAGAGGACATGGCAAGGAACATTTTGACTCTAAAAGAGGCGATAAAAT
GGATTCTGAAAGAAAACGTCATGAAAAAGAATGCCGTGAAAAAGAATGTCGTCATCATCA
TAAGAAACAAGGAAAGGACGTAAAATGGAGAGACTGGAGTGGTGGTGAATTAGCTGAAAG
ACGTCCACACTTCCCTTGGAATTGGATGCAAAATTATCATCGTCGTCGTCCAGCAAAAAC
ACCTGACGACTTTGAAGTTTCTCTCAACGTTGAAGCATTCAAACCTGAGGATATTTCTGT
AAAGGTCAGAGGTCGTGAAATATTGATCGAAGCTAAACATGAAGAAAAGGAAGAAGATGT
TGGATTTGTATCTCGTCATTTTACTCGCAGATATCTTCTTTCTGATGAATTTGATGTTGA
ATCAGTTGCAACATTCTTAACACATAATGGAAAAATGACAATTAGAGCAAATAGACCAAA
ACCAGAAGGTCAAAAGACTCATCGTGAAGTTCCTATTCAACATGTTGCTTCAGAATCTGA
TTCTTCTTCTGATGAAGATGAACACCTTGAGCATATGGTCAAGGAACCGCAATCCTATGG
AGTTTAA
>g5647.t51 Gene=g5647 Length=222
MQDLSYGHGKEHSESQKGEHMGFHHRGHGKEHFDSKRGDKMDSERKRHEKECREKECRHH
HKKQGKDVKWRDWSGGELAERRPHFPWNWMQNYHRRRPAKTPDDFEVSLNVEAFKPEDIS
VKVRGREILIEAKHEEKEEDVGFVSRHFTRRYLLSDEFDVESVATFLTHNGKMTIRANRP
KPEGQKTHREVPIQHVASESDSSSDEDEHLEHMVKEPQSYGV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g5647.t51 | CDD | cd06526 | metazoan_ACD | 98 | 179 | 9.92148E-28 |
| 9 | g5647.t51 | Gene3D | G3DSA:2.60.40.790 | - | 86 | 212 | 1.7E-25 |
| 12 | g5647.t51 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - |
| 14 | g5647.t51 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - |
| 13 | g5647.t51 | MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 222 | - |
| 11 | g5647.t51 | MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 215 | - |
| 2 | g5647.t51 | PANTHER | PTHR45640 | HEAT SHOCK PROTEIN HSP-12.2-RELATED | 25 | 208 | 7.5E-30 |
| 7 | g5647.t51 | PRINTS | PR00299 | Alpha crystallin signature | 99 | 119 | 5.3E-11 |
| 4 | g5647.t51 | PRINTS | PR00299 | Alpha crystallin signature | 121 | 134 | 5.3E-11 |
| 6 | g5647.t51 | PRINTS | PR00299 | Alpha crystallin signature | 136 | 155 | 5.3E-11 |
| 3 | g5647.t51 | PRINTS | PR00299 | Alpha crystallin signature | 158 | 179 | 5.3E-11 |
| 5 | g5647.t51 | PRINTS | PR00299 | Alpha crystallin signature | 188 | 203 | 5.3E-11 |
| 1 | g5647.t51 | Pfam | PF00011 | Hsp20/alpha crystallin family | 100 | 194 | 6.3E-20 |
| 15 | g5647.t51 | ProSiteProfiles | PS01031 | Small heat shock protein (sHSP) domain profile. | 87 | 194 | 16.093 |
| 8 | g5647.t51 | SUPERFAMILY | SSF49764 | HSP20-like chaperones | 87 | 186 | 2.41E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5647/g5647.t51; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5647.t51.fa.iupred3.txt does not exist
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K19767 (heat shock protein Hsp-16.48/Hsp-16.49)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
