Gene loci information

Transcript annotation

  • This transcript has been annotated as Disks large homolog 5.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5660 g5660.t1 isoform g5660.t1 11105811 11110957
chr_2 g5660 g5660.t1 exon g5660.t1.exon1 11105811 11105911
chr_2 g5660 g5660.t1 cds g5660.t1.CDS1 11105811 11105911
chr_2 g5660 g5660.t1 exon g5660.t1.exon2 11105971 11106190
chr_2 g5660 g5660.t1 cds g5660.t1.CDS2 11105971 11106190
chr_2 g5660 g5660.t1 exon g5660.t1.exon3 11106250 11106470
chr_2 g5660 g5660.t1 cds g5660.t1.CDS3 11106250 11106470
chr_2 g5660 g5660.t1 exon g5660.t1.exon4 11106530 11106756
chr_2 g5660 g5660.t1 cds g5660.t1.CDS4 11106530 11106756
chr_2 g5660 g5660.t1 exon g5660.t1.exon5 11106816 11107035
chr_2 g5660 g5660.t1 cds g5660.t1.CDS5 11106816 11107035
chr_2 g5660 g5660.t1 exon g5660.t1.exon6 11107095 11107312
chr_2 g5660 g5660.t1 cds g5660.t1.CDS6 11107095 11107312
chr_2 g5660 g5660.t1 exon g5660.t1.exon7 11107367 11110698
chr_2 g5660 g5660.t1 cds g5660.t1.CDS7 11107367 11110698
chr_2 g5660 g5660.t1 exon g5660.t1.exon8 11110790 11110957
chr_2 g5660 g5660.t1 cds g5660.t1.CDS8 11110790 11110957
chr_2 g5660 g5660.t1 TSS g5660.t1 11111175 11111175
chr_2 g5660 g5660.t1 TTS g5660.t1 NA NA

Sequences

>g5660.t1 Gene=g5660 Length=4707
ATGTCGAGAAATTGCGAATCATCAGTTTGTCCTCACTCATTAGAGTTTGAATTTCTCAAC
GAAAAGTATCGAGAAGTACTTGCTCAAAATAATGCATTGCGCGAGCAACTCAATTCTCGT
ATGCAAGATCCTATAAAATATCTAAAATTATGTGAAGAGCTGACTAAAGAGAGGAACGAA
TTGAAGCAGCAGCTGACTGAGACAGAATATGAAATATCACAAGTTTTGTCTGAACGTGGC
ACTGTCCTCAAAGAGAATCAAAGTCTCTCTGATAAAAATGAAGCACTTCGTAAGGAAATG
GATAAAATTTTGAAGTCGCGAGATGATTTTGTAAAAGAATGCGAGTCACTTAGACAAAAA
ATGGAAACGATGAGAAGTCGGAGTGAATTTTTGCACTCAAATGAAGATCTTTTTAGCAGT
AAAGAAAAAATGGCAAAATATAATCTTGAAGTAGCAGAAATCGAAAGATTAAAGAAAATG
CTTGATAAATCTAATTCAGAATTGGCAAGAGCAATGCAAGAATCAAATATTGCAAAAGAT
CGTCGTGATTGGGCAATTTCAGAACGAGAAAAAATTGTGCAAGAGAGAGACAGTGTAAGA
AATTTATGTGATGAATTAAGAAAAGAGAGAGATACAGCTACATCGAAGTTATTGGCAGCA
ATCAGGGATAAAGATGAGGCTTTTAAGAGAATCGAGCAGCTAAATGAGAAAATTGTTCAA
TTGGGAAAAGTCAAGACAGAATCACATGAACTTCATAAGAAACCACGAGCCAATGATTAT
GAAGAAGAGATTGAGGTCGATGTAAGTGGACATATTGGTATTAATCTTGATTGTGGAAAC
GAAAATGGAGACTATAATGGAAATAGTTTCTATCCTCGTGTGCAATTTGTTGAACCTGGT
TCAATATTTTATGGTAAATTACAGACAAATGATTATATTCAGTATGTAAATGGCATTGAT
TGTTCAACATTGTCACAACGAATGCTATTCAAGCATATTAAGACAAGCTCACCGACTTGT
AAAATGATTGTTAAACGCACAAAGCCAATTCCTAAAGGTATTTATAATGTAGAATTGCAA
CTAAAGAATGGTAATCACGGAATAGTATTTGAGAATGGTATTTATATAGCAAATATTGAA
AGTAATTCACCAGCATATTATCAGCCATTACTTCTTAGTGTTGGTGATCGCGTGCTTCAA
ATAAATGAAAAATCAGTCGAGGGAATCAAAAGCATAAATGAATTCAATCAAATTATGATG
AACATTAAGGGCAATGAGAAACTTTCATTGAAAATCATGAAGAGTGGTGGAGGTAATGAT
GCACCATCTTCATCAATGAGTAGTAAAGGCTGGAGTCGAATGACTAATCAGAGCACACAA
ACAGACCATGGTGATTTGAAGAGGAGCATTGAAATGACTAATTTTCTTCCTATCGTTCCA
TTTATTCCTCCACCACCGCCTAGTGGTGATCAAGATTTATCAATTCTTAATACAAGTATC
AGTTCATCATCACCAAATTCTTCAAAATCATCATCTAAATTTACACCAAGAAATATGTTG
CAAAAAATTAGAGATGTTATTTCAAATACAAACAAGGAGAATCAAGAAAATGATGCAATT
GCTGTGCTTGATTCTGTTCTTGATAGTCAAGATTCTCTTGATGTAGCAGCACAAGAGAAA
TCAAAAAAGAGCAAATATAAAAAAAATATTGCCAAGAGTTGGCCTAGAGCTGCAATGGCA
CTTCATGATAGTGGCAAATCTCATTCTGGCACAGTAGTTTTCAATAAAAAGAAAGAAAGA
CCACGATTATATCTTATTCCAACTGATGATCAACCAAGTCAAGATGATCGAAAAGATCCA
GTTGCCGAAAAGCTTTCTGCTGAACAACAAAAAGCAGTTGATACTTTATTTCAACCACCG
AAACCTCCAATCGTCACTCATTCAAATCGAAATTCAAATCCAGTTCCAAAATCACATTTA
TTCATGCAAAACAATGCAATTCCACCACGCTCAACTTTGCCGAGTAAAAGTCCAATTTAT
ATGCATACAATTTATGAACCATCGTCGAATAATGGAAATAAAGTTTTTCATAATCGACTC
AGTTTGAATTTATCAAATGCACCACCAAATCCTCATTTCTCACCCAATACTTTTATACCG
ATTAAAACAAGTAGCAGTATCGAGTCAACAACAATAGGCAAGAGTCCATTAAATCATTCA
AAAGATGATGGTATTGATTATACTTCACAAAAGTTTAATAGATATTTAAATAACTATTCA
ACAAGTAAATACGACAATGTATCTGATGGTGACAATTTGAGCTCTGGAGGAGTTTCTCAG
CAAGATTCTTTGAATAATGCAAGTATTGGCACACTTCCATCACATTTGAGAGCTCAATCT
ATTAATCGAGTTCAAGGAAGTCCATCTGGATTTAATACAAAATCATCATCAAGTCCGTAT
CGTCATCTTAGTCCATTACTATTTCCACCAAATGATATTGTATCATCACCTAGTCATTTA
TCATCACTTCATAATTCACAACATTCTTCTGTTGATTATACATACTCATCTAAAGGACGC
ACTCAATTATCAAGAGAGGAAATGTCAGCATTTCAACCATTGAGTGGTGGCAGTAGCAGT
TCATATCATCAAGAAAGTGGAACATTTCCGAGAAAAGTCAAACCATTCAAAATGACACCA
CCAAATCAAGTGGGCTTGCCACTCGCATATTCTCCTCTCGAGAGAACTAAACCAATAAAA
ATTAGCAACAATTCACTTGATTATTGCAGCACACCAGATCGTTCATCACCAATGCCAACT
TTTCAAATTCAAATCATAAAACCGGGAAGGAATATTAATATAAATAAAAGAAATTCAATG
CCAGCTTATGGAAAAGGCTATAAAGGCTATATGCCAAATATTGGTGAGAAACGTCGAGTT
GATATTGAGAAAAGTGAAAAGCCACTTGGTATAAGCATTAGATGCAGAAATAATCGAGGA
ATTTTTGTATCACATGTTGGAGAAAATTCAATTGCAAGTCAAGTTGGATTGCAAGTTGGT
GATCAACTTTTAGAATTTTGTGGTATTAATATGCGATCAGCAACTTATGATTTAGCTGCA
AAGTTTTTAAGACAATGTGGAAATTCTATTACAATGCTTGTTCAATATAATCCTGAAAAA
TATGAGGAACTAAGCACAAGCGATGAAAATGTCTCTAGATCAGACGATTCATCAACACCA
CAAAATTCACCTAAAGCAGCACGTTCTGTTATTTCAACTGAATCTACACCATCATCAAGT
AAAAGAATGTCTTCTGTTCCACCACAAGATTCAACTGGAACAATCAAGAGTCATCGAAGC
ACCATCTTAGGACAAGTTCCACAAAATAAAGCTTCATCAGTTGTTTCAGCAACAAATTCA
AATCAATTGCAGCACATGATGCCAGGAAATTCTTCAACACTAGGAAAAGAGCAACCAAGA
GTTGTTTATATTGATAAAAGAAAAAATCCAAATCTTGGTGTGAGTCTGCTTGGCGGGAAT
GCATATGGAATATTCATTCATAGTGTGCAAAAAGATTCAATCGCAGATTTTCGTGTAGGT
GATCAGATTTTGGAATATAATGGAACAGATTTGAGAAGATCAACTGCTGAATATGCAGCT
TTTGAATTGGCTAAACCAGCTGATAAAGTTACTGCATTGGTTCAATATAATATTCATAAA
TTCAATCAAATAAAAGATATTCCTGGCGATTCATTTTATATTCGTGTTGGATTTGATAGA
CATGTTGAATCGAATGAAGCAGAATTGTCATTCAACAAAGATGATGTGCTTTATGTTGAC
AATACAATGTTTCGTGGTGTCTCTGGTCAATGGAGAGCATGGAAATTGGATGAGTATGGC
TGCAGAGTTCAGTGTGGTGTAATTCCAAGTCAAATGAAAGTTGAGGAAGAAATTCGATTA
AATGGTGATGCATCAGAAGATACATCTTCAAATCGAAGAAGTTCAACATCTTATCGTCGT
TCCTTTTTTAAGCGTATAAAACCAAGAAATTCTTCACGAGATTCTAAAGAGTTGGCAAGT
TTTAGCAATACACATTTGAGTTTGTATCTTGAACCTATTAATGATGACAGTCCAATAAGT
TATCAACGTGTTGAAAGATTAGACTATCCCTTTAGACCAGTGCTTGTTATTGGTGCATTG
AATGAGTATGTTGTGGACAAATTAATCAGTGACTTTCCTGAGCAATTCCATCGATGTATT
GTTAATCAAATGAAGTGCAGTAAAGAAGAAATCGAAATGAGACTTAACAACAATCAAATC
ATTGAATATAGACGAAGAGGAAGTTTGTTTGAGTGCGTGTCACTTGAGGCAGCAAAGGAT
AATAAAGAATCACATTGCATTCTTGATGTCAATCTTTCTGCTGTTGAACGTTTACATCGA
AATCAAATTTATCCAATTGTTTTCTTACTTAAATTCAAATCAGCTAAACAAATCAAGGAA
ATTAAAGATTCACGTTATGGCAGCGATAAATTCTCAGCAAAACAGGCGAAAGAAATGTAT
GAACATTCATTGAAATTGGAATCAGAATATAGACAGTACATTTCTGTCGTTATACAAGGT
GTTAATATAACACATATGAGTACGCAAATTAAAACAGCAGTAGATGTGGAACAGAAAAAA
ATTTTATGGGTACCACGTCATTCATAA

>g5660.t1 Gene=g5660 Length=1568
MSRNCESSVCPHSLEFEFLNEKYREVLAQNNALREQLNSRMQDPIKYLKLCEELTKERNE
LKQQLTETEYEISQVLSERGTVLKENQSLSDKNEALRKEMDKILKSRDDFVKECESLRQK
METMRSRSEFLHSNEDLFSSKEKMAKYNLEVAEIERLKKMLDKSNSELARAMQESNIAKD
RRDWAISEREKIVQERDSVRNLCDELRKERDTATSKLLAAIRDKDEAFKRIEQLNEKIVQ
LGKVKTESHELHKKPRANDYEEEIEVDVSGHIGINLDCGNENGDYNGNSFYPRVQFVEPG
SIFYGKLQTNDYIQYVNGIDCSTLSQRMLFKHIKTSSPTCKMIVKRTKPIPKGIYNVELQ
LKNGNHGIVFENGIYIANIESNSPAYYQPLLLSVGDRVLQINEKSVEGIKSINEFNQIMM
NIKGNEKLSLKIMKSGGGNDAPSSSMSSKGWSRMTNQSTQTDHGDLKRSIEMTNFLPIVP
FIPPPPPSGDQDLSILNTSISSSSPNSSKSSSKFTPRNMLQKIRDVISNTNKENQENDAI
AVLDSVLDSQDSLDVAAQEKSKKSKYKKNIAKSWPRAAMALHDSGKSHSGTVVFNKKKER
PRLYLIPTDDQPSQDDRKDPVAEKLSAEQQKAVDTLFQPPKPPIVTHSNRNSNPVPKSHL
FMQNNAIPPRSTLPSKSPIYMHTIYEPSSNNGNKVFHNRLSLNLSNAPPNPHFSPNTFIP
IKTSSSIESTTIGKSPLNHSKDDGIDYTSQKFNRYLNNYSTSKYDNVSDGDNLSSGGVSQ
QDSLNNASIGTLPSHLRAQSINRVQGSPSGFNTKSSSSPYRHLSPLLFPPNDIVSSPSHL
SSLHNSQHSSVDYTYSSKGRTQLSREEMSAFQPLSGGSSSSYHQESGTFPRKVKPFKMTP
PNQVGLPLAYSPLERTKPIKISNNSLDYCSTPDRSSPMPTFQIQIIKPGRNININKRNSM
PAYGKGYKGYMPNIGEKRRVDIEKSEKPLGISIRCRNNRGIFVSHVGENSIASQVGLQVG
DQLLEFCGINMRSATYDLAAKFLRQCGNSITMLVQYNPEKYEELSTSDENVSRSDDSSTP
QNSPKAARSVISTESTPSSSKRMSSVPPQDSTGTIKSHRSTILGQVPQNKASSVVSATNS
NQLQHMMPGNSSTLGKEQPRVVYIDKRKNPNLGVSLLGGNAYGIFIHSVQKDSIADFRVG
DQILEYNGTDLRRSTAEYAAFELAKPADKVTALVQYNIHKFNQIKDIPGDSFYIRVGFDR
HVESNEAELSFNKDDVLYVDNTMFRGVSGQWRAWKLDEYGCRVQCGVIPSQMKVEEEIRL
NGDASEDTSSNRRSSTSYRRSFFKRIKPRNSSRDSKELASFSNTHLSLYLEPINDDSPIS
YQRVERLDYPFRPVLVIGALNEYVVDKLISDFPEQFHRCIVNQMKCSKEEIEMRLNNNQI
IEYRRRGSLFECVSLEAAKDNKESHCILDVNLSAVERLHRNQIYPIVFLLKFKSAKQIKE
IKDSRYGSDKFSAKQAKEMYEHSLKLESEYRQYISVVIQGVNITHMSTQIKTAVDVEQKK
ILWVPRHS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
25 g5660.t1 CDD cd00992 PDZ_signaling 263 345 3.95252E-7
23 g5660.t1 CDD cd00992 PDZ_signaling 367 432 8.47693E-7
22 g5660.t1 CDD cd00992 PDZ_signaling 978 1055 1.07881E-20
24 g5660.t1 CDD cd00992 PDZ_signaling 1159 1235 7.06358E-13
26 g5660.t1 CDD cd11860 SH3_DLG5 1253 1316 1.23548E-30
18 g5660.t1 Coils Coil Coil 16 40 -
21 g5660.t1 Coils Coil Coil 51 78 -
17 g5660.t1 Coils Coil Coil 86 127 -
20 g5660.t1 Coils Coil Coil 154 181 -
19 g5660.t1 Coils Coil Coil 189 244 -
15 g5660.t1 Gene3D G3DSA:2.30.42.10 - 252 348 1.8E-6
14 g5660.t1 Gene3D G3DSA:2.30.42.10 - 351 437 2.8E-8
13 g5660.t1 Gene3D G3DSA:2.30.42.10 - 964 1074 4.8E-33
16 g5660.t1 Gene3D G3DSA:2.30.42.10 - 1141 1247 5.3E-21
12 g5660.t1 Gene3D G3DSA:2.30.30.40 SH3 Domains 1248 1362 1.7E-27
11 g5660.t1 Gene3D G3DSA:3.40.50.300 - 1379 1566 9.6E-40
35 g5660.t1 MobiDBLite mobidb-lite consensus disorder prediction 435 464 -
36 g5660.t1 MobiDBLite mobidb-lite consensus disorder prediction 438 463 -
32 g5660.t1 MobiDBLite mobidb-lite consensus disorder prediction 607 626 -
34 g5660.t1 MobiDBLite mobidb-lite consensus disorder prediction 607 625 -
33 g5660.t1 MobiDBLite mobidb-lite consensus disorder prediction 838 887 -
37 g5660.t1 MobiDBLite mobidb-lite consensus disorder prediction 838 888 -
39 g5660.t1 MobiDBLite mobidb-lite consensus disorder prediction 1064 1132 -
38 g5660.t1 MobiDBLite mobidb-lite consensus disorder prediction 1071 1132 -
4 g5660.t1 PANTHER PTHR46360 DISKS LARGE HOMOLOG 5 15 1567 0.0
3 g5660.t1 Pfam PF00595 PDZ domain 356 433 2.3E-6
2 g5660.t1 Pfam PF00595 PDZ domain 980 1055 7.0E-11
1 g5660.t1 Pfam PF00625 Guanylate kinase 1427 1554 2.2E-7
41 g5660.t1 ProSiteProfiles PS50106 PDZ domain profile. 261 348 8.607
44 g5660.t1 ProSiteProfiles PS50106 PDZ domain profile. 356 436 11.099
43 g5660.t1 ProSiteProfiles PS50106 PDZ domain profile. 979 1058 16.044
42 g5660.t1 ProSiteProfiles PS50106 PDZ domain profile. 1161 1238 13.953
40 g5660.t1 ProSiteProfiles PS50052 Guanylate kinase-like domain profile. 1420 1555 11.066
29 g5660.t1 SMART SM00228 pdz_new 270 348 0.27
30 g5660.t1 SMART SM00228 pdz_new 364 436 1.8E-4
28 g5660.t1 SMART SM00228 pdz_new 987 1058 3.9E-16
27 g5660.t1 SMART SM00228 pdz_new 1170 1238 1.4E-9
31 g5660.t1 SMART SM00072 gk_7 1390 1558 1.0E-6
7 g5660.t1 SUPERFAMILY SSF50156 PDZ domain-like 263 348 1.17E-8
8 g5660.t1 SUPERFAMILY SSF50156 PDZ domain-like 351 436 1.71E-9
6 g5660.t1 SUPERFAMILY SSF50156 PDZ domain-like 971 1071 1.58E-27
5 g5660.t1 SUPERFAMILY SSF50156 PDZ domain-like 1154 1243 1.09E-16
10 g5660.t1 SUPERFAMILY SSF50044 SH3-domain 1262 1317 1.0E-5
9 g5660.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1391 1566 6.55E-23

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5660/g5660.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5660.t1.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values