General information for g5678.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP-binding cassette sub-family A member 17.
Parent gene
- The parent gene g5678 is located on chr_2: 11228091..11229016 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5678 | g5678.t1 | TTS | g5678.t1 | 11223451 | 11223451 |
| chr_2 | g5678 | g5678.t1 | isoform | g5678.t1 | 11223617 | 11229016 |
| chr_2 | g5678 | g5678.t1 | exon | g5678.t1.exon1 | 11223617 | 11223946 |
| chr_2 | g5678 | g5678.t1 | cds | g5678.t1.CDS1 | 11223617 | 11223946 |
| chr_2 | g5678 | g5678.t1 | exon | g5678.t1.exon2 | 11224005 | 11224160 |
| chr_2 | g5678 | g5678.t1 | cds | g5678.t1.CDS2 | 11224005 | 11224160 |
| chr_2 | g5678 | g5678.t1 | exon | g5678.t1.exon3 | 11224214 | 11224923 |
| chr_2 | g5678 | g5678.t1 | cds | g5678.t1.CDS3 | 11224214 | 11224923 |
| chr_2 | g5678 | g5678.t1 | exon | g5678.t1.exon4 | 11224984 | 11227011 |
| chr_2 | g5678 | g5678.t1 | cds | g5678.t1.CDS4 | 11224984 | 11227011 |
| chr_2 | g5678 | g5678.t1 | exon | g5678.t1.exon5 | 11227076 | 11227492 |
| chr_2 | g5678 | g5678.t1 | cds | g5678.t1.CDS5 | 11227076 | 11227492 |
| chr_2 | g5678 | g5678.t1 | exon | g5678.t1.exon6 | 11227551 | 11227989 |
| chr_2 | g5678 | g5678.t1 | cds | g5678.t1.CDS6 | 11227551 | 11227989 |
| chr_2 | g5678 | g5678.t1 | exon | g5678.t1.exon7 | 11228091 | 11228468 |
| chr_2 | g5678 | g5678.t1 | cds | g5678.t1.CDS7 | 11228091 | 11228468 |
| chr_2 | g5678 | g5678.t1 | exon | g5678.t1.exon8 | 11228536 | 11228882 |
| chr_2 | g5678 | g5678.t1 | cds | g5678.t1.CDS8 | 11228536 | 11228882 |
| chr_2 | g5678 | g5678.t1 | exon | g5678.t1.exon9 | 11228947 | 11229016 |
| chr_2 | g5678 | g5678.t1 | cds | g5678.t1.CDS9 | 11228947 | 11229016 |
| chr_2 | g5678 | g5678.t1 | TSS | g5678.t1 | 11229039 | 11229039 |
Sequences
>g5678.t1 Gene=g5678 Length=4875
ATGTGGTCGCATAAATTTAAGCTTCTACTATGGAAGAACTGGATTTTAGTAAAAAGACAT
CCGATTGCTGGATTGTTTGAGATAGTTTTTCCAGTTTTAATTGTTCTAATTTTCACATAT
TCTCGTGGGATGGTTGGGAGCTCAAAAATACCAGAAGTTCACTATGAATCATTCGATACA
TTTCCAACACAATGCAGTTTTGGATATTCATTTAAAGAAGATTATATTGAAAAAATTGGA
TATGCACCGGAAACTGAATTTTTTACGAATATTATAACAAATGCAATTCAAAATAAGGAG
TCTAAATCAAAATTAAAAATTTTTCCTTTTAAAAATGAAGACGAACTTAATATATGGATA
CGAAATGAGTCTGCTACGTCACCAGTTGCTGCAGTTTTCTTCGAAGAAATTGATGCAATA
ACGAAAAATAACAATGAGATTTCACCGAAACATTTGAAGTATGTTATTCATATGCCTCAA
GATTCAACAACAGACTCGTGGTTTACGGATCAAATTTATTACTCAAGTCCATCCAAAAGA
TCTCGCTTATCAGAGCATTCTAGTGGCGTACCCAACACACCACCTTATTATGGTTCATGC
TTTCTTGATATACAAAATCATATTGACAGAGCATTTATAAAGTATTTAAATTCATCGGCA
ACTTTTCCAAAACTCAAAATGAATGCTTTTCCTTATCCAGAAATTATTGAAGATATTTTC
ATGCAATTTGCAACTCAAGCATTTCCAGTACTTTTTGTACTATGCATGATGTTGTCAATT
AAAAACATTATTAAGAATATAGCAATAGAGCGAGAAACATTGTTAAAAGAATCTATGAAA
ATGATGGGTTTGAGCTCGATGATGCACTGGATTTCATGGTTAACAAAATGCTTTATAATG
TTAATAATACCCTTTACTTTCAACTGTATACTGATGACAACCACACTTGCAAGCGAATTA
CCATTATTTGTAAACAGTAATCCTATTTTAATATGGATATTTCTAGTGATATACATCTTT
TCGGTTGTAACGTTATGTTTCTTAATTGCTGTTTGTTTTGAGAAATCAACGAATGCAGCA
AACGTTGGGACATTAATTTTTTTCATTGCTATTGTTCCTCACATTTATTTTGCGGAAAAG
TTTCATGCTTTTCCATATATTCTAAAAGCTGTTTATAGCATGATACCTAATTCGAATATG
GGTTTAGCTGTTTCTATTTTGGCAAATTCTGAAGCTACTGAAACAGGAATTGGAATAACC
ACTTTATTCAAGAGAAGTGTCGATTTGAAATTTTCATTTGGAGAAATTTTAATTTTCATG
ATTCTCGGAAGTATTATTCAAATGTTTCTAGCAACATACATTGAACGAGTTTTCCCAGGT
GAATTTGGAATTTCGGATCCTTTTTATTATCCTGTTATGCCATTCATTAAATTTATTAAG
CGACAAATGGGATATGATTCATTATCGAATGAATCTGTTCTTCAAGATAGACGAATCTCA
AATCAAGACTATGAAGAAGAACCTGAAAATTTACGAGCTGGTGTTAGAATTGTCAATTTA
AGTAAAAAATTCGGTGATAAATTTGTTGTTGATAAACTTTGTCTAAATATGTTTGAAGAT
CAAATAACAGTATTATTAGGACATAATGGAGCTGGAAAAACTACAACCATGAATATGCTT
ACGGGGCTATTTTCTCCAAATGGAGGAACAGCATATATTAATGGAAAAGATATTCGTTCT
GAGTTAGATGAAGCTCGAGTTTCCCTTGGCATATGTGCACAACACAACATCCTTTTCGAA
GAATTAACAGTAAAGGAGCACCTCATGTTTTTCTGTTCGCTTAAAGGAATGATTGACAAA
AGACTGATTGCAGAAGAAATACGACGTTATGCTAATTTATTGGGACTCAAAGAAAAATTA
GATGCCCAAAGTAAAACACTTAGTGGCGGAATGAAACGAAAACTTTCAATTGCTATAGCC
TTATGTGGTGATGCTAAAACAGTTATACTTGACGAGCCAAGTAGTGGGATGGATCCGGAT
GCTCGACGATCACTTTGGGATCTTTTAATCGCTGAGAAAAAAGGAAGAACTATTTTATTA
TCCACGCATTATCTTGACGAGGCAGAAGTTTTAGGTGATCGTATAGCAATCATGACTGAA
GGTCGTCTGCGAACTTGTGGTTCATCTTTTTATTTAAAGAAAAAATTCGGAACAGGCTAT
CGATTGACGACCGTTAAAAAGGAAGGTTTTCAGTCTATTGCTATAGTGAATCTATTGAGA
AAATATTCAATTGATACTCATATTGAAAGTGATGAACCGACAGAGGCCATTTTTATTATA
AGTGAAGAAAATCTGCCACAATTTGAGTATGTTTTTAAAGATTTAGAAGACAATTTGGAG
GACTTAAGAATATCATCATTTGGATGTAGTTTATCAACATTGGAAGAAGTATTTCTTAAA
CTTGGAATTGAATCATCGCAAAAAGACAAAGATCATGACGAAATCGACAACTATAATCGT
TTGAATGAAAATGATCATCAAAATCTTCAATTAAACAATGACGATCCGTGTGTAACTGTC
TCAGGTTCGAAGTTAATTTTTTATCAAATAGAAGCAATGCTTTTGAAGAAATTTCATGTA
TTTCGGAGAACTTGGAAAACACTCTTATATGTGGCACTTTTTTCTGTTTGGATGGTTGTT
ATTGTAATGAGTGCACCAAGTATTAATTTTAATGGAACAAATGAACTTAAAATTTCATTT
GAAGTATATGATGAAACTGAGACAGTATTAGAAGCCAATGGTTCACCTTTTGAAAAATCT
TATCAATCTCTATTTAATGGAAAAGATCACATTACAACTATTTCATCAAACATTTCTGAG
TACATTTTGGAAAAATATAACAAATCATTTTCAGAAGTGAGCCAAAAATATTTGGTAGGA
GCAACACTATCAAAAGATTCAATTATTTGTTGGTTTAATGGACAACCTTATCACACAATT
CCACTGACTTTGAATCTCATTAATCGTGCCATATTAAAGGCCTCTGTTGGAAATGATTAC
GATTTAACAGTTTCAAATAAACCTTACAACATGCCAATCAATGATACAGAAAATCACATG
ATCATCTATGATAACCCAGTTGATGCGATTTTTGCATTAGTTACTATTTTCATGCTCTTC
GTTTATTGGCCAGTAATTTTTATTGGCTCTTATGTCAAAGAACGTGAAACAAGAGCTAAA
TTATTGCAATACATCAGTGGAACAAATCGTTTTGTTTATTGGCTGACATCTTTCTTCTTT
GATTATGTGGTTTTCATACTTATATGCTCTGCCATAATAAGTTTAATTGGAATTTATCAA
CGTAATCATTTTGCCACATTTGAAGAGCTTTGTGTTTTATTTGTAATCTCTTGTTCATAC
GCTTTTGGAATGTTACCATTTATCTATGCATTCTCATTACTTTTTACAAAACATACAACT
GCAGAAACGATGGTTTCTTTATTCAGTATACTTTTTGGTATACTCTATGGTGTGTGTAAA
GCAGTTGAATTGGGTGTTGAGCACAATAAACTATATACATATTTCATAAAAGTTTTCTAT
TGGATTGGACTGTTTTTAGCACCATTTAATCTCGTTGATGAATTGAAAATATTGGGATTT
TCTTTTCTTAATCAAAAATCAATCTTTACGTTTGATAATGATACAGGAATTGGTAAAAAT
ATAACAATCAATATTATATCTGGTATTTTATTTTTGAGCATTTGTTTGTTGAAAGATCAT
CTCATTTTTGAATCTATATACTACAAATTCTTTAACCGTCCAAGAATGCTTCCATTGCTG
AATCAGAATATAGACAATGATGTTGATGAAGAAATACAAAAGGTCAAAGAGATGTCATAT
GATGAAATTAGGCAAAGTAATCTTGTGTTACAAGGCTTAACAAAATTTTATGGAAACTTT
CTAGCTGTGAATCAATTATATCTTGATATAAAACGTAAAGAATGTTTCGGCTTGCTTGGA
ATCAATGGAGCAGGTAAAACCTCAACATTCAAAATGATGACTGGAGACGAACTTATTTCG
GCTGGTGATGCATATGTTTCTGGATTTAGTATGAAAAATAATTTAAGTAAAGTTCATCAG
CATATAAGTTATTGCCCACAATTTGACGCTGTTATCAGTGAACTTACCGGACAAGAAACG
TTGAAAATATTCTCACTGATACGTGGTATACCTAAACATGAAATAAATGAAAATCTCTAT
AGAATGGCAACTGAACTTGGATTTCAACAACATTTGAAGAAGCAGGTCAAAGCATTTAGC
GGAGGCAACAAAAGAAAACTCTCTACTTGCTTGGCTTTATTAGGAAATCCACAGTTAATA
TTTTTAGATGAACCAACCACAGGAATTGATGTTGAAGCAAAGCGCAAATTATGGAACGTA
ATTAACCAAACTCGAAATGCAGGCCGCTCAATTGTTATAACTTCTCATAGCATTGATGAA
TGTGAAGCTTTATGTACCAAAATCGGAATTATGGTCAATGGTCAGTTTAAGTGTCTTGGA
TCTGTTCAACATTTGAAGAACAAATATTCAAAAGGATTTGTTCTAACTATTAAAATGCTA
CGAGATGATCCTGAACTTAAAATTCAAATTGAGAAGCGTGTGGCAGAATCATTTTCATCG
GCAGAATTAAAGGAAAAGTATTTGTGTCTTTTAACTTTTCATATAACTAATACAGACTTG
AAATGGTCAGAAGTTTTTGCAAACTGCTCTCGAATGAAGGCGGATCTCGATATTAGTGAT
TATTCGTTGACACAAATGTCATTGGAACAAGTCTTTATATTATTTTCTAAGAGTGGAATC
TACCAAAATCAATAA
>g5678.t1 Gene=g5678 Length=1624
MWSHKFKLLLWKNWILVKRHPIAGLFEIVFPVLIVLIFTYSRGMVGSSKIPEVHYESFDT
FPTQCSFGYSFKEDYIEKIGYAPETEFFTNIITNAIQNKESKSKLKIFPFKNEDELNIWI
RNESATSPVAAVFFEEIDAITKNNNEISPKHLKYVIHMPQDSTTDSWFTDQIYYSSPSKR
SRLSEHSSGVPNTPPYYGSCFLDIQNHIDRAFIKYLNSSATFPKLKMNAFPYPEIIEDIF
MQFATQAFPVLFVLCMMLSIKNIIKNIAIERETLLKESMKMMGLSSMMHWISWLTKCFIM
LIIPFTFNCILMTTTLASELPLFVNSNPILIWIFLVIYIFSVVTLCFLIAVCFEKSTNAA
NVGTLIFFIAIVPHIYFAEKFHAFPYILKAVYSMIPNSNMGLAVSILANSEATETGIGIT
TLFKRSVDLKFSFGEILIFMILGSIIQMFLATYIERVFPGEFGISDPFYYPVMPFIKFIK
RQMGYDSLSNESVLQDRRISNQDYEEEPENLRAGVRIVNLSKKFGDKFVVDKLCLNMFED
QITVLLGHNGAGKTTTMNMLTGLFSPNGGTAYINGKDIRSELDEARVSLGICAQHNILFE
ELTVKEHLMFFCSLKGMIDKRLIAEEIRRYANLLGLKEKLDAQSKTLSGGMKRKLSIAIA
LCGDAKTVILDEPSSGMDPDARRSLWDLLIAEKKGRTILLSTHYLDEAEVLGDRIAIMTE
GRLRTCGSSFYLKKKFGTGYRLTTVKKEGFQSIAIVNLLRKYSIDTHIESDEPTEAIFII
SEENLPQFEYVFKDLEDNLEDLRISSFGCSLSTLEEVFLKLGIESSQKDKDHDEIDNYNR
LNENDHQNLQLNNDDPCVTVSGSKLIFYQIEAMLLKKFHVFRRTWKTLLYVALFSVWMVV
IVMSAPSINFNGTNELKISFEVYDETETVLEANGSPFEKSYQSLFNGKDHITTISSNISE
YILEKYNKSFSEVSQKYLVGATLSKDSIICWFNGQPYHTIPLTLNLINRAILKASVGNDY
DLTVSNKPYNMPINDTENHMIIYDNPVDAIFALVTIFMLFVYWPVIFIGSYVKERETRAK
LLQYISGTNRFVYWLTSFFFDYVVFILICSAIISLIGIYQRNHFATFEELCVLFVISCSY
AFGMLPFIYAFSLLFTKHTTAETMVSLFSILFGILYGVCKAVELGVEHNKLYTYFIKVFY
WIGLFLAPFNLVDELKILGFSFLNQKSIFTFDNDTGIGKNITINIISGILFLSICLLKDH
LIFESIYYKFFNRPRMLPLLNQNIDNDVDEEIQKVKEMSYDEIRQSNLVLQGLTKFYGNF
LAVNQLYLDIKRKECFGLLGINGAGKTSTFKMMTGDELISAGDAYVSGFSMKNNLSKVHQ
HISYCPQFDAVISELTGQETLKIFSLIRGIPKHEINENLYRMATELGFQQHLKKQVKAFS
GGNKRKLSTCLALLGNPQLIFLDEPTTGIDVEAKRKLWNVINQTRNAGRSIVITSHSIDE
CEALCTKIGIMVNGQFKCLGSVQHLKNKYSKGFVLTIKMLRDDPELKIQIEKRVAESFSS
AELKEKYLCLLTFHITNTDLKWSEVFANCSRMKADLDISDYSLTQMSLEQVFILFSKSGI
YQNQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 42 | g5678.t1 | CDD | cd03263 | ABC_subfamily_A | 515 | 733 | 7.54522E-100 |
| 43 | g5678.t1 | CDD | cd03263 | ABC_subfamily_A | 1308 | 1526 | 1.16267E-95 |
| 11 | g5678.t1 | Gene3D | G3DSA:3.40.50.300 | - | 503 | 747 | 1.4E-60 |
| 12 | g5678.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1295 | 1539 | 2.4E-55 |
| 5 | g5678.t1 | PANTHER | PTHR19229:SF36 | ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B | 4 | 1290 | 0.0 |
| 7 | g5678.t1 | PANTHER | PTHR19229 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA | 4 | 1290 | 0.0 |
| 6 | g5678.t1 | PANTHER | PTHR19229:SF36 | ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B | 1199 | 1613 | 0.0 |
| 8 | g5678.t1 | PANTHER | PTHR19229 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA | 1199 | 1613 | 0.0 |
| 2 | g5678.t1 | Pfam | PF12698 | ABC-2 family transporter protein | 25 | 451 | 4.1E-16 |
| 3 | g5678.t1 | Pfam | PF00005 | ABC transporter | 532 | 674 | 3.3E-26 |
| 1 | g5678.t1 | Pfam | PF12698 | ABC-2 family transporter protein | 885 | 1255 | 2.5E-30 |
| 4 | g5678.t1 | Pfam | PF00005 | ABC transporter | 1324 | 1466 | 4.2E-21 |
| 13 | g5678.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 20 | - |
| 31 | g5678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 40 | - |
| 25 | g5678.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 41 | 246 | - |
| 38 | g5678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 247 | 269 | - |
| 20 | g5678.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 270 | 289 | - |
| 40 | g5678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 290 | 317 | - |
| 24 | g5678.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 318 | 328 | - |
| 32 | g5678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 329 | 353 | - |
| 18 | g5678.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 354 | 359 | - |
| 33 | g5678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 360 | 378 | - |
| 27 | g5678.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 379 | 389 | - |
| 41 | g5678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 390 | 410 | - |
| 17 | g5678.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 411 | 430 | - |
| 37 | g5678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 431 | 454 | - |
| 22 | g5678.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 455 | 887 | - |
| 34 | g5678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 888 | 908 | - |
| 16 | g5678.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 909 | 1048 | - |
| 35 | g5678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1049 | 1071 | - |
| 21 | g5678.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1072 | 1090 | - |
| 36 | g5678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1091 | 1118 | - |
| 15 | g5678.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1119 | 1129 | - |
| 30 | g5678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1130 | 1155 | - |
| 26 | g5678.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1156 | 1160 | - |
| 29 | g5678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1161 | 1179 | - |
| 14 | g5678.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1180 | 1190 | - |
| 28 | g5678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1191 | 1212 | - |
| 23 | g5678.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1213 | 1240 | - |
| 39 | g5678.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1241 | 1263 | - |
| 19 | g5678.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1264 | 1624 | - |
| 57 | g5678.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 647 | 661 | - |
| 61 | g5678.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 515 | 745 | 21.615 |
| 60 | g5678.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1308 | 1538 | 17.921 |
| 58 | g5678.t1 | SMART | SM00382 | AAA_5 | 539 | 722 | 4.1E-8 |
| 59 | g5678.t1 | SMART | SM00382 | AAA_5 | 1332 | 1517 | 0.2 |
| 9 | g5678.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 513 | 739 | 1.91E-55 |
| 10 | g5678.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1308 | 1529 | 5.23E-47 |
| 48 | g5678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 40 | - |
| 52 | g5678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 247 | 269 | - |
| 53 | g5678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 290 | 314 | - |
| 45 | g5678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 329 | 351 | - |
| 49 | g5678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 358 | 377 | - |
| 46 | g5678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 387 | 409 | - |
| 44 | g5678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 429 | 451 | - |
| 47 | g5678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 888 | 910 | - |
| 51 | g5678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1050 | 1072 | - |
| 55 | g5678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1097 | 1119 | - |
| 54 | g5678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1132 | 1154 | - |
| 56 | g5678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1164 | 1186 | - |
| 50 | g5678.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1193 | 1212 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5678/g5678.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5678.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01990 (ABC-2 type transport system ATP-binding protein)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
