General information for g5696.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Multidrug resistance-associated protein 1.
Parent gene
- The parent gene g5696 is located on chr_2: 11283757..11284573 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5696 | g5696.t1 | TTS | g5696.t1 | 11278651 | 11278651 |
| chr_2 | g5696 | g5696.t1 | isoform | g5696.t1 | 11278751 | 11284573 |
| chr_2 | g5696 | g5696.t1 | exon | g5696.t1.exon1 | 11278751 | 11279885 |
| chr_2 | g5696 | g5696.t1 | cds | g5696.t1.CDS1 | 11278751 | 11279885 |
| chr_2 | g5696 | g5696.t1 | exon | g5696.t1.exon2 | 11279937 | 11280179 |
| chr_2 | g5696 | g5696.t1 | cds | g5696.t1.CDS2 | 11279937 | 11280179 |
| chr_2 | g5696 | g5696.t1 | exon | g5696.t1.exon3 | 11280241 | 11280436 |
| chr_2 | g5696 | g5696.t1 | cds | g5696.t1.CDS3 | 11280241 | 11280436 |
| chr_2 | g5696 | g5696.t1 | exon | g5696.t1.exon4 | 11280493 | 11280591 |
| chr_2 | g5696 | g5696.t1 | cds | g5696.t1.CDS4 | 11280493 | 11280591 |
| chr_2 | g5696 | g5696.t1 | exon | g5696.t1.exon5 | 11280651 | 11280883 |
| chr_2 | g5696 | g5696.t1 | cds | g5696.t1.CDS5 | 11280651 | 11280883 |
| chr_2 | g5696 | g5696.t1 | exon | g5696.t1.exon6 | 11280946 | 11281278 |
| chr_2 | g5696 | g5696.t1 | cds | g5696.t1.CDS6 | 11280946 | 11281278 |
| chr_2 | g5696 | g5696.t1 | exon | g5696.t1.exon7 | 11281334 | 11281919 |
| chr_2 | g5696 | g5696.t1 | cds | g5696.t1.CDS7 | 11281334 | 11281919 |
| chr_2 | g5696 | g5696.t1 | exon | g5696.t1.exon8 | 11281980 | 11283390 |
| chr_2 | g5696 | g5696.t1 | cds | g5696.t1.CDS8 | 11281980 | 11283390 |
| chr_2 | g5696 | g5696.t1 | exon | g5696.t1.exon9 | 11283452 | 11283751 |
| chr_2 | g5696 | g5696.t1 | cds | g5696.t1.CDS9 | 11283452 | 11283751 |
| chr_2 | g5696 | g5696.t1 | exon | g5696.t1.exon10 | 11284544 | 11284573 |
| chr_2 | g5696 | g5696.t1 | cds | g5696.t1.CDS10 | 11284544 | 11284573 |
| chr_2 | g5696 | g5696.t1 | TSS | g5696.t1 | 11284724 | 11284724 |
Sequences
>g5696.t1 Gene=g5696 Length=4566
ATGGAAGAGTTTTGTGGAGATGAATTTTGGGATTCAATAAAAATTTGGAGCGACACAGAT
CCAGACTTTACCTTTTGCTTTAAAAATACAGTTCTCATATGGGTGCCGTGCCTATATCTC
TGGTTATTCTCAATTATAGACATCAGAAGACGATCAAAAAGCAGACGAAGTGACATCCCA
TGGTCGCTTCTAAATGTATCAAAATTCTTAATTAGTGTTTTATTGATATGCCTCACAATT
GTTGATTTAGTGATGCTACTCACACTACCAAACGACGGAGAAATATTCAATGTTCAATTT
GTGTCAGTAGGAATTAAACTTGTTACTTTTATTTATGTGTTATTTATTCAATATTATCAC
AAAATCAAGGGCAATCGTACGTCAATATTTTTGTTCTTATTTTGGCTGCTGTTAACCGTT
TTTGCAATTCCACAATTACGATGGGAAGTGATGAACTTTAACGATGATTATTTTAGTGGT
AGTGAAATAACGTGGTCTGGTTTTCAATTTATAAATTATTGCATCTACTACTCACTCATA
TCAATTCAATTTGTGCTGTCATGGTTTGCTGATAAAGCACCACAAAATTCAACATATCCA
AAATCAACAAACCCATCTCCTGAATTGAGAATGGGTGCATTCATCAAAATTTTATATCTT
TGGTTTGAACCAACAGCATGGAAAGGTTTTAGAAGACCTTTAGTGGAATCAGATATTTTC
GATATAAATCCCGAAAATGCATCAGCTGAACTTGTACCAAAGTTTGATAAAAATTTCGAA
AAGAGCTTGCAAAGAAATAAAGAAAAACTTGAAAGGAAACAACGTAAGCAGCAAAAATCA
AAATCATCAGATGATTCACAAGAACAAGAAATACTTCAGCCTCAAGGATCGGTTTTATCA
GCATTAGTGTCATCATTCATTGGACCATTTTCATTTGCTCTACTTCTTCGTCTTGCCATT
GATTTTCTACAATTCGGATCCCCCTTGATACTTGGTGCATTAATTGAATATGTAGAAACG
GACGGTGTACTTTGGAAAGGTCTGATACTTACTCTTGGTCTCTTTTTGGTCAGTTTTGTG
TTAGCTATTCTCAATGGACATCAATCGATTATTGCATATCGTGTTGGCTTCTGTATGAGA
ACTTCACTCATCAGTGGAATATATAGAAAAGCATTGAGAATTTCGAGTGCCGCTAAACGA
AACACAACTGTAGGAGAAATTGTAAATTTAATGGCAGTTGACAGTAATCGTTTCTTAGAA
ATGATTCCATACCTTATGTTGACATTAACATCACCCATTGTTATGGCTTTCGCAATTTAT
TTATTATGGAACATTCTTGGTGTTGCTGTATTTGCTGGTTTAGCTGTGCTTATTCTTATG
TTTCCAATAAGTGGAGTTATTGCTAATCAATTGAAAAATTTGCAATTCCGGCAAATGAAA
ATGAAGGATGAGCGTGTAAAATTGACAAATGAAATTCTCAATGGTATTAAAGTTTTAAAA
CTATATGCATGGGAGCCAAGTTTTGAACAGATGATTTCGCAAACACGTGAAAGAGAGTTG
ATAAATTTGAGAAAAGCTGCAATTTATAATGCTATAACAGAATTTCAATGGGGTCTTACA
CCTTTCTTAGTTTCTTTTGTTTCATTTACTACTTATGTTATGCTCGGATATGCATTAACA
CCAAGTGTTGCTTTTGTGTCAATTGCTTTATTCAACATTTTAAGAATGCCAATGACCATG
TTACCACTTGGCATAAATTTCATCATGATTGCATATGTTTCAATTAAACGTCTTGACAAA
TTCATGAATTCAAAAGAAATTGATCCAAATAATGTCACAAATAATCCAAGTCAGTACAGT
TTACATATTCAAAATGGAAATTTCGCATGGGAAGGGGAAGAAAAAATTTTAAAAAATATT
AACATGGCTATAAAGAAAGGCAGCTTGTCAGCAGTTGTAGGCCCAGTAGGTTCAGGCAAA
TCATCTTTAATCAGCGCTTACTTGGGAGAAATGGAAAAACTTACAGGCAATGTGAATGTC
GATGGTAGAATTGCATATGTACCACAACAAGCATGGATTCAAAATGCAACACTTCAAGAT
AATATTTTGTTTGGAAAGCCTATGAATAGACGATTGTATGAAAAAGTTCTTCAAGCCTGT
GCTTTGACTGCAGATCTTGCAATGTTACCTGGTGGTGATCAAACTGAAATTGGTGAAAAA
GGAATAAATTTATCAGGTGGCCAGAAACAAAGAATATCACTTGCAAGAGCTGTCTACTCT
GGAGCAGAGATTTACATTTTTGATGATCCATTAAGTGCAGTTGACAGTCATGTTGGCAAA
CATATTTTTGATAATGTTATGGCAAATGATGGAATTTTGAAAGGAAAAACCAGATTTTTA
GTCACTCATGCTTTATCGTATTTACCACGTGTTGATGAAATTTTTGTGATGACAAATGGA
GAAATTACAGAGAGCGGCACATACAAACAACTACTTTCAGAAAAGGGTGCATTTTCAGAA
TTCCTTATTCAATATTTGCAAGAGCATCAAGATGAAGAAGATCTTGCTGAAATTGAAATT
CAATTGGGTGATGATGAAAATTTAAGACAGATTTTTGAGAGATCAATTTCACAAATGTCA
ATCAACAAAGAAGAGAAATTTGTAAGTAATGGTTCAATTAGGAGGTTGGGAAGCAGAAAG
TCATCGAAACAAAGTGAACAGCAAGAAGTAATAAAAAAGCCAATGAACAAGCTCATTACA
TCTGAAGATGTTGCGGTAGGTGCTGTTTCATGGGAAGTTTACATTCGCTACTTTAAAAGT
GTCGGATGGAGTTTTGTTGTTTTAATTATCTTTTTCAACATACTCTCTCAAGTCGCATCA
ATTTTATCAAATTATTGGATAACATTTTGGACACAAGATACAAGAGCAGTGACTGAAGAT
TTCTGGAGAAACCTTTATGTTGGAGTTTACGGAAGTTTCGGATTACTTCAAGGCATCTCA
ATTTTGGTTGGAACGTTAGTTTTTGCACTTGGATCGTTGAAAGCAGCTCGTCATTTACAT
TTTAGACTTCTTAATAATGTTTTGAGACTGCCACTTCAATTCTTTGATACAACACCCTTG
GGTCGAGTCATAAATCGCTTCTCAAGAGACACTGATGTAATCGATGCTTTCTTACCAAAT
ATGATGAGATCATGGTTTTCAATGGGTTTTGCTGTGATTGGAACAATCATCGTTATCAGC
ATTTCTACACCTATATTCATTGCAGTTATTATACCATTGATGATTGTCTATTACTTATTT
CAAAGATTTTACATTGCTACTTCAAGACAACTTAAAAGAATTGAATCAATCACACGAAGT
CCAATTTATTCACATTTTAGTGAGAGTGTCAGTGGTCAATCAACGATTCGTGCTTATAAT
GAAGAGAAACGCTTCATATCTGATTCTGAAACGAGAGTTGATCACAATCAGGCTGTTGCT
TATCAAAATATTGTTGCAAACAGATGGTTAGGAATAAGATTGGAAATTGTTGGATCATTG
ATTGTTCTTTTTGCATCACTTTTTGCTGTTTTGGGTAGAGCAACAATTGAAGGAGCGATT
GTTGGTTTATCAATTAGTTATGCTTTACAAATTTCATCACTCCTCAACTTTTTTGTTCGT
GTTGCAACGGAAGTAGAGACAAATATTGTTTCTGTTGAACGTGTTGAAGAATACGCTGAT
AAACCGCAAGAAGCACCATGGAAAACTGTTGATGTTGATCCTGAATGGCCTCAAAGTGGA
ATTGTTGAGTTTAAAGATTTTCAGTTAAGATATCGAGAGGGTCTTGATTTAGTTTTAAGA
GGGATCAACTTTAAATCAAAAAGTCAAGAAAAGATTGGAATTGTAGGAAGGACAGGTGCT
GGTAAATCGAGTCTTACTTTAGCACTTTTCAGAATTATTGAAGCAGCAGGTGGAAAAATT
GTTATTGATGATATTGATGTTGCTGGAATTGGATTACATTCTTTAAGATCAAGATTGACA
ATTATTCCTCAAGACCCTGTTTTATTCAGTGGTAACTTAAGAATGAATATCGATCCATTC
AATTCATATTCTGATGATGCTATTTGGAAAGCTCTTGAACATTCACATTTGAAAACATTT
GTTAAAGGGCTTTCTGATGGATTAGAGCATAATATTACAGAAGGAGGTGAAAATCTTTCA
GTTGGTCAACGACAACTCGTTTGCCTTGCAAGAGCACTGTTGCGTAAAACTAAAGTTTTG
ATTCTTGATGAAGCGACAGCAGCAATAGACTTTGAGACTGATGAATTAATTCAAAAGACA
ATCAGAACACAATTTAATGACTGTACAATCTTAACTATTGCACATCGATTAAATACAATT
ATGGACAGTGACAGAATCATTGTTTTGGATCAAGGAATGATAGCTGAATTTGATACACCT
CAAGCATTACTTGATGACAGAAATTCAATTTTCTATAGTATGGCAAGAAATGCAGGTCTC
ATTGATCATGACAATGTACTTCGTGAAGACGATGAAAATCATGAAAATTATAGTACTAAT
TTTTGA
>g5696.t1 Gene=g5696 Length=1521
MEEFCGDEFWDSIKIWSDTDPDFTFCFKNTVLIWVPCLYLWLFSIIDIRRRSKSRRSDIP
WSLLNVSKFLISVLLICLTIVDLVMLLTLPNDGEIFNVQFVSVGIKLVTFIYVLFIQYYH
KIKGNRTSIFLFLFWLLLTVFAIPQLRWEVMNFNDDYFSGSEITWSGFQFINYCIYYSLI
SIQFVLSWFADKAPQNSTYPKSTNPSPELRMGAFIKILYLWFEPTAWKGFRRPLVESDIF
DINPENASAELVPKFDKNFEKSLQRNKEKLERKQRKQQKSKSSDDSQEQEILQPQGSVLS
ALVSSFIGPFSFALLLRLAIDFLQFGSPLILGALIEYVETDGVLWKGLILTLGLFLVSFV
LAILNGHQSIIAYRVGFCMRTSLISGIYRKALRISSAAKRNTTVGEIVNLMAVDSNRFLE
MIPYLMLTLTSPIVMAFAIYLLWNILGVAVFAGLAVLILMFPISGVIANQLKNLQFRQMK
MKDERVKLTNEILNGIKVLKLYAWEPSFEQMISQTRERELINLRKAAIYNAITEFQWGLT
PFLVSFVSFTTYVMLGYALTPSVAFVSIALFNILRMPMTMLPLGINFIMIAYVSIKRLDK
FMNSKEIDPNNVTNNPSQYSLHIQNGNFAWEGEEKILKNINMAIKKGSLSAVVGPVGSGK
SSLISAYLGEMEKLTGNVNVDGRIAYVPQQAWIQNATLQDNILFGKPMNRRLYEKVLQAC
ALTADLAMLPGGDQTEIGEKGINLSGGQKQRISLARAVYSGAEIYIFDDPLSAVDSHVGK
HIFDNVMANDGILKGKTRFLVTHALSYLPRVDEIFVMTNGEITESGTYKQLLSEKGAFSE
FLIQYLQEHQDEEDLAEIEIQLGDDENLRQIFERSISQMSINKEEKFVSNGSIRRLGSRK
SSKQSEQQEVIKKPMNKLITSEDVAVGAVSWEVYIRYFKSVGWSFVVLIIFFNILSQVAS
ILSNYWITFWTQDTRAVTEDFWRNLYVGVYGSFGLLQGISILVGTLVFALGSLKAARHLH
FRLLNNVLRLPLQFFDTTPLGRVINRFSRDTDVIDAFLPNMMRSWFSMGFAVIGTIIVIS
ISTPIFIAVIIPLMIVYYLFQRFYIATSRQLKRIESITRSPIYSHFSESVSGQSTIRAYN
EEKRFISDSETRVDHNQAVAYQNIVANRWLGIRLEIVGSLIVLFASLFAVLGRATIEGAI
VGLSISYALQISSLLNFFVRVATEVETNIVSVERVEEYADKPQEAPWKTVDVDPEWPQSG
IVEFKDFQLRYREGLDLVLRGINFKSKSQEKIGIVGRTGAGKSSLTLALFRIIEAAGGKI
VIDDIDVAGIGLHSLRSRLTIIPQDPVLFSGNLRMNIDPFNSYSDDAIWKALEHSHLKTF
VKGLSDGLEHNITEGGENLSVGQRQLVCLARALLRKTKVLILDEATAAIDFETDELIQKT
IRTQFNDCTILTIAHRLNTIMDSDRIIVLDQGMIAEFDTPQALLDDRNSIFYSMARNAGL
IDHDNVLREDDENHENYSTNF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 53 | g5696.t1 | CDD | cd18595 | ABC_6TM_MRP1_2_3_6_D1_like | 312 | 598 | 5.52153E-127 |
| 51 | g5696.t1 | CDD | cd03250 | ABCC_MRP_domain1 | 621 | 821 | 8.86653E-112 |
| 52 | g5696.t1 | CDD | cd18603 | ABC_6TM_MRP1_2_3_6_D2_like | 946 | 1239 | 2.21749E-155 |
| 50 | g5696.t1 | CDD | cd03244 | ABCC_MRP_domain2 | 1260 | 1480 | 3.38215E-131 |
| 15 | g5696.t1 | Coils | Coil | Coil | 256 | 280 | - |
| 16 | g5696.t1 | Coils | Coil | Coil | 471 | 491 | - |
| 13 | g5696.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 272 | 609 | 1.1E-19 |
| 11 | g5696.t1 | Gene3D | G3DSA:3.40.50.300 | - | 619 | 852 | 2.0E-71 |
| 14 | g5696.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 908 | 1246 | 1.5E-47 |
| 12 | g5696.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1247 | 1496 | 1.1E-83 |
| 74 | g5696.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 289 | - |
| 75 | g5696.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 286 | - |
| 5 | g5696.t1 | PANTHER | PTHR24223:SF241 | MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1 | 93 | 1501 | 0.0 |
| 6 | g5696.t1 | PANTHER | PTHR24223 | ATP-BINDING CASSETTE SUB-FAMILY C | 93 | 1501 | 0.0 |
| 1 | g5696.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 312 | 578 | 1.5E-30 |
| 4 | g5696.t1 | Pfam | PF00005 | ABC transporter | 637 | 771 | 2.0E-19 |
| 2 | g5696.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 947 | 1191 | 1.6E-41 |
| 3 | g5696.t1 | Pfam | PF00005 | ABC transporter | 1279 | 1427 | 1.2E-27 |
| 28 | g5696.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 30 | - |
| 48 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 31 | 48 | - |
| 19 | g5696.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 49 | 68 | - |
| 42 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 69 | 89 | - |
| 25 | g5696.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 90 | 94 | - |
| 46 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 95 | 116 | - |
| 24 | g5696.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 117 | 127 | - |
| 34 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 128 | 148 | - |
| 27 | g5696.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 149 | 167 | - |
| 49 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 168 | 190 | - |
| 20 | g5696.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 191 | 297 | - |
| 39 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 298 | 323 | - |
| 29 | g5696.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 324 | 342 | - |
| 45 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 343 | 364 | - |
| 21 | g5696.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 365 | 423 | - |
| 37 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 424 | 443 | - |
| 32 | g5696.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 444 | 448 | - |
| 44 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 449 | 471 | - |
| 22 | g5696.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 472 | 541 | - |
| 35 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 542 | 570 | - |
| 31 | g5696.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 571 | 575 | - |
| 43 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 576 | 595 | - |
| 23 | g5696.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 596 | 944 | - |
| 41 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 945 | 967 | - |
| 33 | g5696.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 968 | 986 | - |
| 40 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 987 | 1013 | - |
| 18 | g5696.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1014 | 1069 | - |
| 38 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1070 | 1100 | - |
| 30 | g5696.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1101 | 1169 | - |
| 36 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1170 | 1191 | - |
| 17 | g5696.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1192 | 1197 | - |
| 47 | g5696.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1198 | 1219 | - |
| 26 | g5696.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1220 | 1521 | - |
| 73 | g5696.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 744 | 758 | - |
| 72 | g5696.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 1399 | 1413 | - |
| 78 | g5696.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 312 | 589 | 36.634 |
| 80 | g5696.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 621 | 844 | 23.436 |
| 77 | g5696.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 947 | 1227 | 40.371 |
| 79 | g5696.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1262 | 1496 | 17.947 |
| 71 | g5696.t1 | SMART | SM00382 | AAA_5 | 646 | 821 | 5.0E-9 |
| 70 | g5696.t1 | SMART | SM00382 | AAA_5 | 1288 | 1473 | 2.1E-13 |
| 7 | g5696.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 303 | 608 | 1.27E-35 |
| 10 | g5696.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 610 | 842 | 8.8E-59 |
| 8 | g5696.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 942 | 1244 | 1.7E-56 |
| 9 | g5696.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1255 | 1495 | 2.33E-70 |
| 76 | g5696.t1 | TIGRFAM | TIGR00957 | MRP_assoc_pro: multi drug resistance-associated protein (MRP) | 6 | 1500 | 0.0 |
| 65 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 23 | 45 | - |
| 64 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 88 | - |
| 56 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 98 | 116 | - |
| 67 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 129 | 148 | - |
| 66 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 168 | 190 | - |
| 54 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 298 | 320 | - |
| 57 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 342 | 364 | - |
| 59 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 421 | 443 | - |
| 61 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 447 | 469 | - |
| 62 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 526 | 548 | - |
| 55 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 552 | 574 | - |
| 60 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 581 | 595 | - |
| 58 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 945 | 967 | - |
| 63 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 988 | 1010 | - |
| 68 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1066 | 1100 | - |
| 69 | g5696.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1169 | 1191 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5696/g5696.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5696.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0022857 | transmembrane transporter activity | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05665 (ATP-binding cassette, subfamily C (CFTR/MRP), member 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
