General information for g5697.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Multidrug resistance-associated protein 1.
Parent gene
- The parent gene g5697 is located on chr_2: 11285543..11291222 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5697 | g5697.t1 | TTS | g5697.t1 | 11285271 | 11285271 |
| chr_2 | g5697 | g5697.t1 | isoform | g5697.t1 | 11285543 | 11291222 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon1 | 11285543 | 11286937 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS1 | 11285543 | 11286937 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon2 | 11286997 | 11287163 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS2 | 11286997 | 11287163 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon3 | 11287223 | 11287321 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS3 | 11287223 | 11287321 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon4 | 11287377 | 11287627 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS4 | 11287377 | 11287627 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon5 | 11287691 | 11287754 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS5 | 11287691 | 11287754 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon6 | 11287813 | 11287886 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS6 | 11287813 | 11287886 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon7 | 11287945 | 11288103 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS7 | 11287945 | 11288103 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon8 | 11288159 | 11288744 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS8 | 11288159 | 11288744 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon9 | 11288804 | 11289295 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS9 | 11288804 | 11289295 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon10 | 11289353 | 11289562 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS10 | 11289353 | 11289562 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon11 | 11289620 | 11289739 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS11 | 11289620 | 11289739 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon12 | 11289825 | 11289901 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS12 | 11289825 | 11289901 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon13 | 11289959 | 11290428 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS13 | 11289959 | 11290428 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon14 | 11290488 | 11290778 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS14 | 11290488 | 11290778 |
| chr_2 | g5697 | g5697.t1 | exon | g5697.t1.exon15 | 11291193 | 11291222 |
| chr_2 | g5697 | g5697.t1 | cds | g5697.t1.CDS15 | 11291193 | 11291222 |
| chr_2 | g5697 | g5697.t1 | TSS | g5697.t1 | 11291739 | 11291739 |
Sequences
>g5697.t1 Gene=g5697 Length=4485
ATGGAGGATTTTTGTGGAAGTGTCCTTTGGGATACCGATATCTTTTGGAGAGACAGTAAT
CCAGACTTTACATTTTGTTTTAAACAAACTGTATTGATATGGGTGCCATGCTTTTTTCTT
TGGATTTTTTCACCGCTCGATATTATGTGGCGTTTGAAAAGTCGTTACAGTGATATCCCA
TGGTCATTTTTGAATGTTACAAAATTTATTATTCTACTGCTGCTCATCTCTTTATGTTTA
ACCAACTTAATTGTTTTAATTGACATCGAGGAAATATTTCCTGTTCAATTTGTGTCAGCA
GGAATCCAAATTATCACATTTATTTATGTCGGCATGCTTCAATATTTACATAAAATCAAA
GGTCATCACACATCAGGAATTTTATTCAATTTTTGGATTCTACTCGTTTTTTGTGCTACA
CCACAACTCTTTTTTGAAATTAGAAATATTGTGAATGATGGTTTTCCAGAAGAAATAACA
TTTGATCAATGGTCATTTATATATTATTGCACTTATTATTCTTTAGCTTGTGTCATGCTT
CTTCTTAATTGTTTCTCTGATAAGAAACCAAGAAATTCTACATTCCCAAAATATTCAAAT
CCATCACCTGAATTGAGTGTGAGTTTTCTTAATAAACTTCACTTTCAATGGTTCACAAGA
ATTGCATGGCTTGGATTTTTACGACCACTCAATGAGAACGATTTGTATGACATTCATCCT
CAAGATAGTTGTGCTGAATTGTATCCACCATTTCATAAACATTTTCAAGAAAGTATTGAG
AAAAATCGAAGGAAAAATCCACAACCATCACAAGATCCAACTATCGTTTCCAACGGTTCA
ACCCTAGTTGCACTCATCAAAGCATATGGTGGACCCTTCTGGTTTTCGGCCATTCTTCGA
CTTTTCTGTGATGCTTTACTTATTTCTACACCACTCATTCTTGGCATGCTGATCAACTAT
ATTAATGAAGGAGGTGCAGAATGGAAAGGATGGTTTTTAATATCAATTATGTTCATTGTT
TCATTCCTGCAACCATATCTTAATGGTCAATACTTTCATAATAATTTAAACACTGGTTAT
CGTATTCGTGCTGGTCTTATGGCTGCTGTTTATCGAAAAGCTTTGACAATATCAAGCAGT
GTGAAGAAAAATACTACTGTGGGAGAGATTGTTAACTTGATGGCAGTTGATGCAAACCGT
TTCTTCGATTTGATGCCAAATATTCATATGTTGTGGTCAGGATTCTTAATTATTGGTGTT
GTCACTTATTTATTGTATCTGCAAATTGGTTTCTCCGTTTTTGCTGGTTTTATTGTCATA
TTTGTCACATTTCCATTTTCATTTTGGATTGCAACAAAACTCAAAGTTCTTCAAATTGAG
CAAATGAAATTCAAAGATGAACGAATTAAATCGATTAATGAAATTCTTGGTGGTATGAAA
GTTTTAAAACTTTATGCATGGGAACCAAGTTTTGAGAATTTGATTTTAAAAATAAGAAAA
ACGGAAATGAGAATAATTAAGAAAATTGCACTTTATAATGCTGGAACATATTTCATTTGG
TCATTAGCACCTTTCATTGTTGCTATGGTTTCTTTCATTACTTACGTTCTTCTTGGTGGA
ACATTGACTTCAGAAAGTGCATTTATATCTTTAGCTTTATTCAACATTCTTCGCTTTCCA
ATGACATTCTTCCCAATGTTGATAAATTTTCTTATGCAGTCACTTGTAGCTGTTAAAAGA
ATTGATAAATTTTTGAATTCTAAGGAAATTGATTCTACTAATGTGTCATATCTTCCATGC
GACAAAGCAATGTATATCAAAAATGGAACTTTTTCATGGGATGGAACTATAAAAGTCTTG
AAAAATATTAACATGGCTATTAAGAAAGGAAGTTTGTCAGCAGTTGTAGGCCCAGTAGGT
TCAGGCAAGACATCTTTAATCAGCGCTTACTTGGGAGAAATGGAAAAACTTACAGGCAAT
GTGAACATTGATGGTAGAATTGCATATGTACCACAACAAGCATGGATTCAAAATGCAACA
CTTCAAGATAATATTTTGTTTGGAAAGCCTATGAATAGACGATTGTATGAAAAAGTTCTT
CAAGCCTGTGCTTTGACTGCAGATCTTGCAATGTTACCTGGTGGTGATCAAACTGAAATT
GGTGAAAAAGGAATAAATTTATCAGGTGGTCAGAAACAAAGAATATCACTTGCAAGAGCT
GTCTACTCTGGAGCAGAGATTTACATTTTTGATGATCCTTTAAGTGCAGTTGACAGTCAT
GTTGGCAAACATATTTTTGATAATGTTATGTGTGAAAATGGAATGTTGAAAGGAAAAACA
CGATTATTGGCAACACATGCACTTTCTTTTCTGCCACGTGTTAATGAAATTTTTGTGATG
ACAAATGGAGAAATTAGTGAGCATGGAACTTACAAAGAACTTTTAGCACAACGTGGAGCA
TTTTCTGAATTTTTATTGCAATATATACAAGAACAAGGAGAAGAAGAGGAGCTTTCAGAA
GAATTAATAGAACACTTAGAAATAGATGAGCAATTCAAGAATAATAGAAGACGTTCTTCA
ACCACATCAATTCTTGATCGTCGTGAAAGACGCAATTCACGCAGACTATCACAAAAATCG
ATAGATGAAGAACAGGAATCTGTGAGAAAATCGCTTGCAAAATTGATAGAAAATGAAGAA
GCTGGCACTGGCAGTGTGAACTTTAAAATTTACTTGTCTTATTTCAAGCATGCTGGTTTA
TGGATGTCAATTTTAGCATTTGGTTCAAATATTTTGTTTCAAGCAGCTAGTGTTGGTTCT
AATGCATGGCTTGCGTTCTGGTCAGCAAGTACGAGAACGACTGAAGATTCAGCATGGAAT
AACTTCTATGCTGGTATTTATGGTGGATTGGGTGGAATTCAAGCAATCACTTTAATTATT
GCTTCAATTACTTTTGCTGTTGGATGCTTAAATGTTGCACGGGTATCACATAATAATCTA
TTGAAAAATATTTTAAGACTTCCAATGTGGTTCTTTGACACAACACCTCTCGGTCGTATT
CTCAACAGATTTTCAAGAGATGTCGATATTGTCGACAATATCATCCCTATTTTTATGAGA
AATTGGATTTTCATGTTGTTTGCTGTCATTGCAATTTTTATCGTTATTTCAATTTCAACA
CCATGGTTTTTAACAACAGTTCTTCCTGTTATCATTATCTACTATTTTATTCAAAAGTTT
TACATTGAAACATCAAGACAAATTAGAAGACTTGAATCGCTAACGAGAAGTCCAATTTTG
GCTCATTTTGGTGAAACAGTTAGTGGTCAATCTGTTATAAGAGCTTATGCAGAACAGAAA
AGATTTATTGGGGATTCGGAATCAAAAGTTGATTTTCATCAAGGAATTGCTTTTCATGGA
ATTGTAGCGCACAGATGGTTACAATTGAGATTAGAAATTATTGGTGCTTTTGTAATATTC
TTTGCTGCATTATTTGCTATTTTGGCTCGTCATACCATCGGTGGCGCACTTGCTGGACTA
TCAGTCAGTTATGCTTTGCAAGTTTCTCAATTGTTATTCTTTTTGGTGCGAATGGCTGTT
GAAGTTGAAACTAACATTGTAGCTATAGAAAGAATTGAAGAGTATATTGAGAAACCTCAA
GAAGCACCATGGAAAACTGTTGATGTTGATCCTGAATGGCCAAATAAAGGAATTGTTGAA
TTTAAAGATTTTCAAGTACGTTATCGAGAGGGTCTTGATTTAGTGCTAAAGGGTGTTTCA
TTCAAATTGAGAAGTCAAGAAAAGATTGGAATTGTAGGAAGAACAGGTGCTGGTAAATCA
AGTTTGACATTGTCTTTATTTAGAATTATTGAAGCAGCAGGTGGAAAAATTGTTATTGAT
GATATCAATATTGCTGAAATTGGATTACATTCTTTAAGATCAAGATTGACAATTATTCCT
CAAGATCCTGTTTTATTCAGTGGCAGCTTAAGAATGAATATCGATCCATTCGACTCATAT
TCTGATGATGCTATTTGGAAAGCTCTTGAACATTCACATTTAAAAGCATTTGTTGCAGGA
CTTGCTGATGGACTTTCATACAAGATCACAGAAGGAGGTGAAAATCTTTCAGTTGGTCAA
CGACAACTCGTTTGCCTTGCAAGAGCACTGTTGCGTAAAACTAAAGTTTTGATTCTTGAT
GAAGCGACAGCAGCAATAGACTTTGAGACTGATGAATTAATTCAAAAGACAATCAGAACA
CAATTTAATGACTGTACAATCTTAACTATCGCACATCGATTAAATACAATTATGGACAGT
GATAGAATCATTGTTTTGGATCAAGGAATGATAGCTGAATTTGATACACCTCAAGCATTA
CTTGATGACAGAAATTCAATTTTCTATAGTATGGCAAAGAACGCAGGATTAATTGACAAT
GAAAATATGACATATATTAAGGAAGTTGATGAGAATGATGATTGA
>g5697.t1 Gene=g5697 Length=1494
MEDFCGSVLWDTDIFWRDSNPDFTFCFKQTVLIWVPCFFLWIFSPLDIMWRLKSRYSDIP
WSFLNVTKFIILLLLISLCLTNLIVLIDIEEIFPVQFVSAGIQIITFIYVGMLQYLHKIK
GHHTSGILFNFWILLVFCATPQLFFEIRNIVNDGFPEEITFDQWSFIYYCTYYSLACVML
LLNCFSDKKPRNSTFPKYSNPSPELSVSFLNKLHFQWFTRIAWLGFLRPLNENDLYDIHP
QDSCAELYPPFHKHFQESIEKNRRKNPQPSQDPTIVSNGSTLVALIKAYGGPFWFSAILR
LFCDALLISTPLILGMLINYINEGGAEWKGWFLISIMFIVSFLQPYLNGQYFHNNLNTGY
RIRAGLMAAVYRKALTISSSVKKNTTVGEIVNLMAVDANRFFDLMPNIHMLWSGFLIIGV
VTYLLYLQIGFSVFAGFIVIFVTFPFSFWIATKLKVLQIEQMKFKDERIKSINEILGGMK
VLKLYAWEPSFENLILKIRKTEMRIIKKIALYNAGTYFIWSLAPFIVAMVSFITYVLLGG
TLTSESAFISLALFNILRFPMTFFPMLINFLMQSLVAVKRIDKFLNSKEIDSTNVSYLPC
DKAMYIKNGTFSWDGTIKVLKNINMAIKKGSLSAVVGPVGSGKTSLISAYLGEMEKLTGN
VNIDGRIAYVPQQAWIQNATLQDNILFGKPMNRRLYEKVLQACALTADLAMLPGGDQTEI
GEKGINLSGGQKQRISLARAVYSGAEIYIFDDPLSAVDSHVGKHIFDNVMCENGMLKGKT
RLLATHALSFLPRVNEIFVMTNGEISEHGTYKELLAQRGAFSEFLLQYIQEQGEEEELSE
ELIEHLEIDEQFKNNRRRSSTTSILDRRERRNSRRLSQKSIDEEQESVRKSLAKLIENEE
AGTGSVNFKIYLSYFKHAGLWMSILAFGSNILFQAASVGSNAWLAFWSASTRTTEDSAWN
NFYAGIYGGLGGIQAITLIIASITFAVGCLNVARVSHNNLLKNILRLPMWFFDTTPLGRI
LNRFSRDVDIVDNIIPIFMRNWIFMLFAVIAIFIVISISTPWFLTTVLPVIIIYYFIQKF
YIETSRQIRRLESLTRSPILAHFGETVSGQSVIRAYAEQKRFIGDSESKVDFHQGIAFHG
IVAHRWLQLRLEIIGAFVIFFAALFAILARHTIGGALAGLSVSYALQVSQLLFFLVRMAV
EVETNIVAIERIEEYIEKPQEAPWKTVDVDPEWPNKGIVEFKDFQVRYREGLDLVLKGVS
FKLRSQEKIGIVGRTGAGKSSLTLSLFRIIEAAGGKIVIDDINIAEIGLHSLRSRLTIIP
QDPVLFSGSLRMNIDPFDSYSDDAIWKALEHSHLKAFVAGLADGLSYKITEGGENLSVGQ
RQLVCLARALLRKTKVLILDEATAAIDFETDELIQKTIRTQFNDCTILTIAHRLNTIMDS
DRIIVLDQGMIAEFDTPQALLDDRNSIFYSMAKNAGLIDNENMTYIKEVDENDD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 55 | g5697.t1 | CDD | cd18595 | ABC_6TM_MRP1_2_3_6_D1_like | 295 | 581 | 7.38285E-132 |
| 53 | g5697.t1 | CDD | cd03250 | ABCC_MRP_domain1 | 606 | 804 | 3.60513E-112 |
| 54 | g5697.t1 | CDD | cd18603 | ABC_6TM_MRP1_2_3_6_D2_like | 923 | 1215 | 6.19953E-139 |
| 52 | g5697.t1 | CDD | cd03244 | ABCC_MRP_domain2 | 1237 | 1457 | 1.18222E-134 |
| 15 | g5697.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 258 | 591 | 6.3E-24 |
| 14 | g5697.t1 | Gene3D | G3DSA:3.40.50.300 | - | 603 | 835 | 6.6E-71 |
| 16 | g5697.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 886 | 1223 | 3.4E-40 |
| 13 | g5697.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1224 | 1474 | 1.7E-84 |
| 76 | g5697.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 859 | 882 | - |
| 6 | g5697.t1 | PANTHER | PTHR24223:SF241 | MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1 | 74 | 265 | 0.0 |
| 8 | g5697.t1 | PANTHER | PTHR24223 | ATP-BINDING CASSETTE SUB-FAMILY C | 74 | 265 | 0.0 |
| 5 | g5697.t1 | PANTHER | PTHR24223:SF241 | MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1 | 275 | 1478 | 0.0 |
| 7 | g5697.t1 | PANTHER | PTHR24223 | ATP-BINDING CASSETTE SUB-FAMILY C | 275 | 1478 | 0.0 |
| 2 | g5697.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 294 | 561 | 1.8E-32 |
| 3 | g5697.t1 | Pfam | PF00005 | ABC transporter | 620 | 754 | 4.6E-19 |
| 1 | g5697.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 924 | 1191 | 1.4E-34 |
| 4 | g5697.t1 | Pfam | PF00005 | ABC transporter | 1256 | 1404 | 1.2E-28 |
| 30 | g5697.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 30 | - |
| 47 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 31 | 50 | - |
| 23 | g5697.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 51 | 61 | - |
| 51 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 62 | 87 | - |
| 26 | g5697.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 88 | 92 | - |
| 36 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 93 | 115 | - |
| 18 | g5697.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 116 | 126 | - |
| 40 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 127 | 145 | - |
| 31 | g5697.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 146 | 164 | - |
| 43 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 165 | 185 | - |
| 25 | g5697.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 186 | 296 | - |
| 49 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 297 | 318 | - |
| 33 | g5697.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 319 | 329 | - |
| 38 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 330 | 347 | - |
| 17 | g5697.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 348 | 409 | - |
| 44 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 410 | 427 | - |
| 32 | g5697.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 428 | 432 | - |
| 50 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 433 | 452 | - |
| 20 | g5697.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 453 | 508 | - |
| 45 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 509 | 537 | - |
| 29 | g5697.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 538 | 556 | - |
| 42 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 557 | 578 | - |
| 21 | g5697.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 579 | 917 | - |
| 35 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 918 | 946 | - |
| 28 | g5697.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 947 | 965 | - |
| 48 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 966 | 993 | - |
| 19 | g5697.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 994 | 1032 | - |
| 39 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1033 | 1056 | - |
| 34 | g5697.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1057 | 1061 | - |
| 46 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1062 | 1082 | - |
| 24 | g5697.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1083 | 1148 | - |
| 41 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1149 | 1169 | - |
| 27 | g5697.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1170 | 1174 | - |
| 37 | g5697.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1175 | 1196 | - |
| 22 | g5697.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1197 | 1494 | - |
| 75 | g5697.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 727 | 741 | - |
| 74 | g5697.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 1376 | 1390 | - |
| 78 | g5697.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 294 | 573 | 37.102 |
| 81 | g5697.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 604 | 827 | 22.863 |
| 79 | g5697.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 924 | 1204 | 36.585 |
| 80 | g5697.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1239 | 1473 | 18.287 |
| 73 | g5697.t1 | SMART | SM00382 | AAA_5 | 629 | 804 | 2.3E-9 |
| 72 | g5697.t1 | SMART | SM00382 | AAA_5 | 1265 | 1450 | 3.0E-12 |
| 10 | g5697.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 282 | 582 | 1.7E-37 |
| 12 | g5697.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 595 | 825 | 4.51E-58 |
| 9 | g5697.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 920 | 1221 | 4.19E-52 |
| 11 | g5697.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1232 | 1472 | 5.62E-71 |
| 77 | g5697.t1 | TIGRFAM | TIGR00957 | MRP_assoc_pro: multi drug resistance-associated protein (MRP) | 6 | 1477 | 0.0 |
| 62 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 30 | 52 | - |
| 57 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 65 | 87 | - |
| 59 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 92 | 113 | - |
| 70 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 126 | 148 | - |
| 64 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 163 | 185 | - |
| 66 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 293 | 315 | - |
| 65 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 330 | 352 | - |
| 60 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 408 | 425 | - |
| 56 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 429 | 451 | - |
| 67 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 517 | 539 | - |
| 58 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 549 | 571 | - |
| 68 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 917 | 939 | - |
| 71 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 970 | 992 | - |
| 63 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1034 | 1056 | - |
| 61 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1060 | 1082 | - |
| 69 | g5697.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1151 | 1173 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5697/g5697.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5697.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0022857 | transmembrane transporter activity | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05665 (ATP-binding cassette, subfamily C (CFTR/MRP), member 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
