Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Adenylate kinase isoenzyme 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5718 g5718.t11 TTS g5718.t11 11379234 11379234
chr_2 g5718 g5718.t11 isoform g5718.t11 11379536 11381659
chr_2 g5718 g5718.t11 exon g5718.t11.exon1 11379536 11379839
chr_2 g5718 g5718.t11 cds g5718.t11.CDS1 11379813 11379839
chr_2 g5718 g5718.t11 exon g5718.t11.exon2 11379907 11380130
chr_2 g5718 g5718.t11 cds g5718.t11.CDS2 11379907 11380130
chr_2 g5718 g5718.t11 exon g5718.t11.exon3 11380198 11380249
chr_2 g5718 g5718.t11 cds g5718.t11.CDS3 11380198 11380249
chr_2 g5718 g5718.t11 exon g5718.t11.exon4 11381657 11381659
chr_2 g5718 g5718.t11 cds g5718.t11.CDS4 11381657 11381659
chr_2 g5718 g5718.t11 TSS g5718.t11 11381744 11381744

Sequences

>g5718.t11 Gene=g5718 Length=583
ATGGTTGTTGATTCAAAGACTCCAATTATTTGGGTTTTAGGCGGACCAGGATGCGGCAAG
GGAACACAGTGTGATAAGATTGTTGCCAAGTATGGCTTTAACCACCTTTCAACTGGCGAC
TTACTACGTGCTGAAGTAGCTTCAGGTTCAGTAAAGGGTCAAGAGTTGTTGAGTATCATG
AAAACAGGTGGATTAGTTAGCAATGAAGCAGTTCTTGAACTTCTTGCTGCTGCTATGTCA
AAAATTGAAAATGCCAAAGGATTTCTTATTGATGGGTTAAGAGGAAGCACAAGGACGAGA
ATTTGAAAAGCTTATTCGTCCAGTTGATCTCGTTCTTTACTTTGAATGCTCCAATGAAAC
ACTTGTGAATCGTATTCTTGTTCGTGCTGCTGCCTCTGTTGAAAAGCGTGCTGATGATAA
TGAAGAAACTTTAAAGACAAGAATCGCAACATTCAGAGCCAATACTGAGAAAATTCTAAT
TCAATATCCTGATAAACTTAGACGCATTAATGCCGAACGTGGAGTTGATGAAATTTTTGC
AGAAGTATCTGATGCCATTGATGCTACATTAGCTAAAAAATAA

>g5718.t11 Gene=g5718 Length=101
MVVDSKTPIIWVLGGPGCGKGTQCDKIVAKYGFNHLSTGDLLRAEVASGSVKGQELLSIM
KTGGLVSNEAVLELLAAAMSKIENAKGFLIDGLRGSTRTRI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g5718.t11 CDD cd01428 ADK 9 92 0
8 g5718.t11 Gene3D G3DSA:3.40.50.300 - 1 98 0
2 g5718.t11 PANTHER PTHR23359 NUCLEOTIDE KINASE 8 94 0
3 g5718.t11 PANTHER PTHR23359:SF70 ADENYLATE KINASE 1, ISOFORM B 8 94 0
6 g5718.t11 PRINTS PR00094 Adenylate kinase signature 11 24 0
5 g5718.t11 PRINTS PR00094 Adenylate kinase signature 39 53 0
4 g5718.t11 PRINTS PR00094 Adenylate kinase signature 88 101 0
1 g5718.t11 Pfam PF00406 Adenylate kinase 12 93 0
7 g5718.t11 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 6 93 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5718/g5718.t11; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5718.t11.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0019205 nucleobase-containing compound kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed