General information for g5718.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Adenylate kinase isoenzyme 1.
Parent gene
- The parent gene g5718 is located on chr_2: 11379536..11382717 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5718 | g5718.t4 | isoform | g5718.t4 | 11379184 | 11381659 |
| chr_2 | g5718 | g5718.t4 | exon | g5718.t4.exon1 | 11379184 | 11379848 |
| chr_2 | g5718 | g5718.t4 | cds | g5718.t4.CDS1 | 11379536 | 11379848 |
| chr_2 | g5718 | g5718.t4 | exon | g5718.t4.exon2 | 11379911 | 11380130 |
| chr_2 | g5718 | g5718.t4 | cds | g5718.t4.CDS2 | 11379911 | 11380130 |
| chr_2 | g5718 | g5718.t4 | exon | g5718.t4.exon3 | 11380198 | 11380249 |
| chr_2 | g5718 | g5718.t4 | cds | g5718.t4.CDS3 | 11380198 | 11380249 |
| chr_2 | g5718 | g5718.t4 | exon | g5718.t4.exon4 | 11381606 | 11381659 |
| chr_2 | g5718 | g5718.t4 | cds | g5718.t4.CDS4 | 11381606 | 11381659 |
| chr_2 | g5718 | g5718.t4 | TSS | g5718.t4 | 11381744 | 11381744 |
| chr_2 | g5718 | g5718.t4 | TTS | g5718.t4 | NA | NA |
Sequences
>g5718.t4 Gene=g5718 Length=991
ATGGTGAGTTTTTATTTTAATCATCATCAGTTTTTATCTCTAAAAGACCTCAATGTTGTT
GATTCAAAGACTCCAATTATTTGGGTTTTAGGCGGACCAGGATGCGGCAAGGGAACACAG
TGTGATAAGATTGTTGCCAAGTATGGCTTTAACCACCTTTCAACTGGCGACTTACTACGT
GCTGAAGTAGCTTCAGGTTCAGTAAAGGGTCAAGAGTTGTTGAGTATCATGAAAACAGGT
GGATTAGTTAGCAATGAAGCAGTTCTTGAACTTCTTGCTGCTGCTATGTCAAAAATTGAA
AATGCCAAAGGATTTCTTATTGATGGATACCCAAGAGAGGAAGCACAAGGACGAGAATTT
GAAAAGCTTATTCGTCCAGTTGATCTCGTTCTTTACTTTGAATGCTCCAATGAAACACTT
GTGAATCGTATTCTTGTTCGTGCTGCTGCCTCTGTTGAAAAGCGTGCTGATGATAATGAA
GAAACTTTAAAGACAAGAATCGCAACATTCAGAGCCAATACTGAGAAAATTCTAATTCAA
TATCCTGATAAACTTAGACGCATTAATGCCGAACGTGGAGTTGATGAAATTTTTGCAGAA
GTATCTGATGCCATTGATGCTACATTAGCTAAAAAATAAATTTAAATTTTCTTAAAGCAC
TTTCTCTCTTTTTATAACTTTTAAATGTATAACAATAAAAAACCATTTAATGGAGCAATT
TTCAGATGTAAGAAACAATAATTATTAATAATTACGCTTACAAAATTATAAATGGGAGGA
AGAATAAATTCAATTAAAAATTTTCAATATCATTTACATGATGAATTGGATGAATAATAA
GCTATTAATGTTATATACAGAAGAAAAGATGAAACAAAAATATTTATTTTCAATGTGAAA
TTTCGTGCAAATAAAATTAATTGAATTCATTTTAATGTTCAATTTTTCAACTTGTTGATT
TCTTTGGTGAAAAACGATTGTTGGGGCGTTT
>g5718.t4 Gene=g5718 Length=212
MVSFYFNHHQFLSLKDLNVVDSKTPIIWVLGGPGCGKGTQCDKIVAKYGFNHLSTGDLLR
AEVASGSVKGQELLSIMKTGGLVSNEAVLELLAAAMSKIENAKGFLIDGYPREEAQGREF
EKLIRPVDLVLYFECSNETLVNRILVRAAASVEKRADDNEETLKTRIATFRANTEKILIQ
YPDKLRRINAERGVDEIFAEVSDAIDATLAKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g5718.t4 | CDD | cd01428 | ADK | 26 | 197 | 1.25911E-64 |
| 10 | g5718.t4 | Gene3D | G3DSA:3.40.50.300 | - | 15 | 208 | 6.5E-58 |
| 4 | g5718.t4 | Hamap | MF_00235 | Adenylate kinase [adk]. | 25 | 206 | 34.717617 |
| 2 | g5718.t4 | PANTHER | PTHR23359 | NUCLEOTIDE KINASE | 24 | 206 | 6.1E-66 |
| 3 | g5718.t4 | PANTHER | PTHR23359:SF70 | ADENYLATE KINASE 1, ISOFORM B | 24 | 206 | 6.1E-66 |
| 8 | g5718.t4 | PRINTS | PR00094 | Adenylate kinase signature | 28 | 41 | 1.0E-24 |
| 7 | g5718.t4 | PRINTS | PR00094 | Adenylate kinase signature | 56 | 70 | 1.0E-24 |
| 6 | g5718.t4 | PRINTS | PR00094 | Adenylate kinase signature | 105 | 121 | 1.0E-24 |
| 5 | g5718.t4 | PRINTS | PR00094 | Adenylate kinase signature | 155 | 170 | 1.0E-24 |
| 1 | g5718.t4 | Pfam | PF00406 | Adenylate kinase | 29 | 182 | 7.9E-45 |
| 12 | g5718.t4 | ProSitePatterns | PS00113 | Adenylate kinase signature. | 105 | 116 | - |
| 9 | g5718.t4 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 25 | 205 | 9.91E-34 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5718/g5718.t4; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5718.t4.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0006139 | nucleobase-containing compound metabolic process | BP |
| GO:0019205 | nucleobase-containing compound kinase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00939 (adenylate kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed