Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Adenylate kinase isoenzyme 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5718 g5718.t5 isoform g5718.t5 11379184 11381659
chr_2 g5718 g5718.t5 exon g5718.t5.exon1 11379184 11379848
chr_2 g5718 g5718.t5 cds g5718.t5.CDS1 11379813 11379848
chr_2 g5718 g5718.t5 exon g5718.t5.exon2 11379907 11380130
chr_2 g5718 g5718.t5 cds g5718.t5.CDS2 11379907 11380130
chr_2 g5718 g5718.t5 exon g5718.t5.exon3 11380198 11380249
chr_2 g5718 g5718.t5 cds g5718.t5.CDS3 11380198 11380249
chr_2 g5718 g5718.t5 exon g5718.t5.exon4 11381657 11381659
chr_2 g5718 g5718.t5 cds g5718.t5.CDS4 11381657 11381659
chr_2 g5718 g5718.t5 TSS g5718.t5 11381744 11381744
chr_2 g5718 g5718.t5 TTS g5718.t5 NA NA

Sequences

>g5718.t5 Gene=g5718 Length=944
ATGGTTGTTGATTCAAAGACTCCAATTATTTGGGTTTTAGGCGGACCAGGATGCGGCAAG
GGAACACAGTGTGATAAGATTGTTGCCAAGTATGGCTTTAACCACCTTTCAACTGGCGAC
TTACTACGTGCTGAAGTAGCTTCAGGTTCAGTAAAGGGTCAAGAGTTGTTGAGTATCATG
AAAACAGGTGGATTAGTTAGCAATGAAGCAGTTCTTGAACTTCTTGCTGCTGCTATGTCA
AAAATTGAAAATGCCAAAGGATTTCTTATTGATGGGTTAATACCCAAGAGAGGAAGCACA
AGGACGAGAATTTGAAAAGCTTATTCGTCCAGTTGATCTCGTTCTTTACTTTGAATGCTC
CAATGAAACACTTGTGAATCGTATTCTTGTTCGTGCTGCTGCCTCTGTTGAAAAGCGTGC
TGATGATAATGAAGAAACTTTAAAGACAAGAATCGCAACATTCAGAGCCAATACTGAGAA
AATTCTAATTCAATATCCTGATAAACTTAGACGCATTAATGCCGAACGTGGAGTTGATGA
AATTTTTGCAGAAGTATCTGATGCCATTGATGCTACATTAGCTAAAAAATAAATTTAAAT
TTTCTTAAAGCACTTTCTCTCTTTTTATAACTTTTAAATGTATAACAATAAAAAACCATT
TAATGGAGCAATTTTCAGATGTAAGAAACAATAATTATTAATAATTACGCTTACAAAATT
ATAAATGGGAGGAAGAATAAATTCAATTAAAAATTTTCAATATCATTTACATGATGAATT
GGATGAATAATAAGCTATTAATGTTATATACAGAAGAAAAGATGAAACAAAAATATTTAT
TTTCAATGTGAAATTTCGTGCAAATAAAATTAATTGAATTCATTTTAATGTTCAATTTTT
CAACTTGTTGATTTCTTTGGTGAAAAACGATTGTTGGGGCGTTT

>g5718.t5 Gene=g5718 Length=104
MVVDSKTPIIWVLGGPGCGKGTQCDKIVAKYGFNHLSTGDLLRAEVASGSVKGQELLSIM
KTGGLVSNEAVLELLAAAMSKIENAKGFLIDGLIPKRGSTRTRI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g5718.t5 CDD cd01428 ADK 9 92 0
7 g5718.t5 Gene3D G3DSA:3.40.50.300 - 1 100 0
2 g5718.t5 PANTHER PTHR23359 NUCLEOTIDE KINASE 8 92 0
3 g5718.t5 PANTHER PTHR23359:SF70 ADENYLATE KINASE 1, ISOFORM B 8 92 0
5 g5718.t5 PRINTS PR00094 Adenylate kinase signature 11 24 0
4 g5718.t5 PRINTS PR00094 Adenylate kinase signature 39 53 0
1 g5718.t5 Pfam PF00406 Adenylate kinase 12 93 0
6 g5718.t5 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 6 93 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5718/g5718.t5; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5718.t5.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0019205 nucleobase-containing compound kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed