Gene loci information

Transcript annotation

  • This transcript has been annotated as Neither inactivation nor afterpotential protein C.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5737 g5737.t1 isoform g5737.t1 11457207 11462802
chr_2 g5737 g5737.t1 exon g5737.t1.exon1 11457207 11457241
chr_2 g5737 g5737.t1 cds g5737.t1.CDS1 11457207 11457241
chr_2 g5737 g5737.t1 exon g5737.t1.exon2 11457303 11457503
chr_2 g5737 g5737.t1 cds g5737.t1.CDS2 11457303 11457503
chr_2 g5737 g5737.t1 exon g5737.t1.exon3 11457608 11457743
chr_2 g5737 g5737.t1 cds g5737.t1.CDS3 11457608 11457743
chr_2 g5737 g5737.t1 exon g5737.t1.exon4 11457803 11458141
chr_2 g5737 g5737.t1 cds g5737.t1.CDS4 11457803 11458141
chr_2 g5737 g5737.t1 exon g5737.t1.exon5 11458199 11458487
chr_2 g5737 g5737.t1 cds g5737.t1.CDS5 11458199 11458487
chr_2 g5737 g5737.t1 exon g5737.t1.exon6 11458544 11458650
chr_2 g5737 g5737.t1 cds g5737.t1.CDS6 11458544 11458650
chr_2 g5737 g5737.t1 exon g5737.t1.exon7 11458714 11459218
chr_2 g5737 g5737.t1 cds g5737.t1.CDS7 11458714 11459218
chr_2 g5737 g5737.t1 exon g5737.t1.exon8 11459344 11459633
chr_2 g5737 g5737.t1 cds g5737.t1.CDS8 11459344 11459633
chr_2 g5737 g5737.t1 exon g5737.t1.exon9 11459686 11460295
chr_2 g5737 g5737.t1 cds g5737.t1.CDS9 11459686 11460295
chr_2 g5737 g5737.t1 exon g5737.t1.exon10 11460351 11460459
chr_2 g5737 g5737.t1 cds g5737.t1.CDS10 11460351 11460459
chr_2 g5737 g5737.t1 exon g5737.t1.exon11 11460511 11461345
chr_2 g5737 g5737.t1 cds g5737.t1.CDS11 11460511 11461345
chr_2 g5737 g5737.t1 exon g5737.t1.exon12 11461404 11461679
chr_2 g5737 g5737.t1 cds g5737.t1.CDS12 11461404 11461679
chr_2 g5737 g5737.t1 exon g5737.t1.exon13 11461870 11462182
chr_2 g5737 g5737.t1 cds g5737.t1.CDS13 11461870 11462182
chr_2 g5737 g5737.t1 exon g5737.t1.exon14 11462240 11462802
chr_2 g5737 g5737.t1 cds g5737.t1.CDS14 11462240 11462802
chr_2 g5737 g5737.t1 TSS g5737.t1 NA NA
chr_2 g5737 g5737.t1 TTS g5737.t1 NA NA

Sequences

>g5737.t1 Gene=g5737 Length=4608
ATGTCTGATTTAGCTTACAATTCATTACCGTCACCAGACGGACGATTTGAACTTAAAGAG
GTCATTGGAACAGGTGTCTGTTCTAAAGTTTACAAAGCGATTGACATTCAATCAAATAAT
CGTGCTGTTGCTATAAAAATTCAACGCTATGAAAAGGATATGATTACTCATATCAATGAA
GAATATCGAGTTCTTCGTGATTATTCTTCTCATCCTAATTTACCAGATTTTTATGGAGTT
TATCGAAAAAAATCGAGCGATTCAGAAATTGCTGATGAAGTTTGGTTTATTCTTGAATTA
TGTGAGGCAGGTCCAGTAATTGATATCATTCGATCACTGGAAACAATTAATAAACGAATT
AATGAAGAACATTTAGCTTATATTTTGAGAGAAACAGCAAAAGCTATAGTTCATTTGCAT
GAAAATAATGTTATACATCGTGATATACGCGGAAGTAATATTTTAATGACCAAGGAAGGC
GAAATTAAACTTTGTGACTTTGGATTATCGCGTGATACACGTTCCACAAATGGCAAACGT
AAAACATGCATTGGTTCATGCAGCTGGATGGCACCAGAAATTATTGCGAGTGCTAAAGGT
AGCTCTTATGATAGTCGTGCTGATGTTTGGGCATTGGGAATAACAGCAATCGAGTTGGCT
GATGGAAAAGCTCCGTTTGCTGACATGCATCCAACAAGAGCGATGTTTCAAATTTTGAGA
AATCCACCACCAACACTTTACCGACAATCTAATTGGAGTCAAAATTTCAATGACTTTATT
TTGGAATGTCTTGAGAAAAATCATGATCATCGTCCATTTTTAATTGAAGTTATGGAACAT
CCTTTCTTTACTGAGCTTCCATCGAATGACTATTATCTTTCACAAGAATTAAAAATTCTC
TATAAAGATGTCGAAACTATCAATTTTCCAACTCAAAATGAAACAATAATTCATAATGGA
TTGTTGAAAACTCATGATAATAAAATTGAAAAGCTTTATGTTGAAGATTTAGCAGCACTT
GAGAAATTATCAGATGACACTATTTTGGATGAAGTGAAAAATAGATTTAAAAATGGTTCA
ACTTATAGCTATATCGGTGATGTTCTTTTATCATTAAATCCAAATAAGGAATTTCCTATT
TATGATAGAAAATTTCATAATCGTTATTTATTCAAGTCACGTTCTGACAATGCTCCACAT
ATTTTTGCTGTTGCTGACAGTGCTTATCAAGATATGATGCATCATGAAGAACAACAGTAT
ATAATTTTCTCAGGTGAATCATATTCTGGCAAAACTGCAAATATGCGACTTTGTTTTGAG
CATCTGATTGTAATGGGAGAGGGAAATGCAGGCATAGTGAACAGATTACAAAATGCTTTG
CTTGCTGTCAATGCTTTGACTCATGCAGGAACTCCATTAAATAATGACTCAACAAGGTGC
ATTTTACAAACTCAAATGACATTCGGAACAACTGGAAAATTGAGTGGTGCAATTTTCTAT
GTTTATTTACTTGAAAAGACAAGAGTTTCAACAACTGATATGACACAATCAAATTTTCAT
CTTTTCTATTACTTTTATGATGCAATGGATGCTGAAGAACGTTTGAATGATTTTAGTCTT
GATGGCGGCAGACAATATCGCTATTTACGAGTGCCAGATAAGTTTACCAAATCAAACCTT
CATTTTATTCGTGATGATCCTCTTGGAAACACACTCAAGTTCAAGGATTTCGAGCAAGCA
CTTTTGGCACTTGATATTTCACAAGATACTTTGGAAGAAATTTATAAAATTCTCGCTGCA
ATATTGCTACTTGGCGAAGTTCGTTTCAAAGATAGCGAAACAGATCGAAGAGCTGCATTA
GTTGATCCTGATATTGTCAATAAAATTGCTCCATTACTAAAAATTGATGCAAAGAAATTA
TCATGGGCATTTGTAAACTATTGCATTTTAGTTCAAGGAGATGTTGAAAAGAGAAGAATG
ACGACAGACCAAGCAAGAGATGCTCGTGATGTTTTAGCAGGAACTTTGTATTCCCGACTT
GTTGATTATGTTGTTAACTTAATCAATCAAAAATTAGCTTATAATCGAGCTATTTTCGGT
GACATAAATTCAATCATTCTTATGGATCTTTTTGGCTTCGAATGCTTCCCAAAAAATCAA
ATTGAGCAACTATTTGTTAATTGCATTAATGAACAAATGCAATATCATTATAATCAACGT
GTTTTTGTCTGGGAAATGTTAGAACAAGAAGAGGAACATCTTCCTGTAACTAAATTAAAT
TTTTATGACAACAAAATTGCAGTTGATCATTTAATGAATACGCCAAAGGGACTTTTTCAC
ATCATTGACGATGCAACTCGTGGACAATATACAAGTGATTTTATTACTGATACTATTGGC
ACTCGAAAATCTCCATACTTGCAACGCTATAGTGCAACAGAATTCAGTGTTGCTCATTAT
TCTGGAAAAATAAATTATAATACCAGAGATTTTATTGAAAAGAATCGCGACTTTTTGCCA
CCTGAAATGATGGAAACGATGAGATTGTCAGAATGTGAAATTGTTAAGACTTTATTCACT
AATCCACTTTCTAAGAGTGGCAATTTAACAATGGCAATGACAGAAATTGAAGCAAGAAGC
ACATCGACATCCAGAAAAGGTGCAAAATGGGCAAATGCATTGGTCAATGAAAAAATTAAG
AATAGAAAAATGAATACTCTTTCTCATGGTCAATATTCACAAATTCATCGTATGAGAACA
ATGTCGGCTGTTTTTAGAGCTGCATCTTTGGAAATTCTTAAGAATCTTTCAGTTATCTCT
AATAGTGGTGGCATTCAATTTGTTCGATGTGTACGTTGTGATCTTGATTATCGTGAAATG
AATTTCAATGAAGACATAGTTCGTCAGCAATTACGAGCTATGGCAATACTCGATACTGCA
AGAGCAAGACAAAAGGGATTTTCAGTTAGGATTCCGTTCCAAGAATTTTTAAGACGTTAT
AAATTCCTTGCATTTGATTTTGATGAGAATGTTGAAATGACAAAAGATAATTGTCGTTTA
CTTCTTGTTCGATTGAAAATGGAAGGCTGGATTATTGGAACATCAAAAGTTTTCCTAAAA
TATTATAATGAAGAATTTCTTGCTCGTTTGTATGAAACTCAAGTAAAGAAAATTATCAAA
GTGCAGTCAATGATGCGTGCTTTTCTTGCTAAAAAAAATATTGCAAATAAATTTAAGCAA
TTAAACACGAAACAACAGCATGTTCATTTTTCAAAAGATCTTAAACCTGAAGATGCTGTA
TTGAAAATTCAAACTGCATTCCGTGGCTATCAAATGAGAAAGAAATATGGTCCATTGATC
AATCAAAAGACAGGAAAAATAGATATTTCAACTGCAAAATTCATTGAACCATTTGCAACA
AAATGGAGAAATAAATCAATTTTCCAAATTTTGTTGCAATATCGATCAGTTCGGCACATG
GATTTAGTTAATTTCTCTCAGCAAGTTCACATTTACAATCAAAGATTAATGGCAGGATTG
ACAAATACTGAACAGTGCATTTTATTAGAAAAAATTGATCCAAAAGAGATCAATAAAGAA
CAACTTGGACCAATTCGTCGTGCTGTTTGGAAAATTCCATTTCGACTTGATGAAATTCCT
TACTTTGACACGAAATTTTTATGTGACACAGCTCAAGTCACAAACTTTACAACATTTGAT
GAAGATTATGAAGCTTGGGATGCTCCATTGCAAAGACGAAAAACTGTTTCAAGTCATATC
AATAATCACTTGTATAACATTGGTCAAAGACGTGAATCGATCTATAATGATATTGATGAA
GATGATGGCATGATTGTCAATGAACCATTTAGCAGAGATCCAACTCTCCCTATTAGAAAA
ATCAAAGCAAGAAATATTGTTTATAATCCTTCACCACGTCAAAGTATTTCTAGTCCTAAA
CCATGCGAAATTCGTCCATATTGCATTTCACCAACACCTTATTCGCAGCCATCAGTCGGA
AATTTATTGCAAAAATTCTCTGCTGATGGAAGTGAAATTAAACCAATTGTTTTTAAAAAA
CGTTCAGCACCAAAGCCACCAAAATCTAATGAAGAAAAACCATCATGGGCTAAAAAAGAT
CCTGCAAATCGACCAACATCACCAATGTATCGTCAATCAAAATCTGATACAATCAAAGAA
ATGGAGTCATTTGGACGAAAATCTAGTGATGAGGCTGAAACTGATGACAGTCCACCATTC
AATTTTCAAGCAATGTTGAGAAAAACTAAACATAATCGCAATTCTTTGAAACGAGTTACT
GATACAAAATTGACTTTGCCACATGACAGCGATTACAATAACAATAGCTCAGAGCCATAT
GTAGAGACGAAACCAAGTTATTCATCAGTTGTTTACCATAGCAAACATGATCGTCCAAAA
TCATGCAATGATGGCAATAATGATAATCGTCCAACATCAAGAAAATCTTCACTTTCAAAG
GAAACGTTGCGTAATAAAAATGGAACTGATGAAAATGACAACATGGATTTTATACAAGAG
GAAATTGCGCCTGGAATTGTCATTGAAGGATATGTGGCTGAATTATAA

>g5737.t1 Gene=g5737 Length=1535
MSDLAYNSLPSPDGRFELKEVIGTGVCSKVYKAIDIQSNNRAVAIKIQRYEKDMITHINE
EYRVLRDYSSHPNLPDFYGVYRKKSSDSEIADEVWFILELCEAGPVIDIIRSLETINKRI
NEEHLAYILRETAKAIVHLHENNVIHRDIRGSNILMTKEGEIKLCDFGLSRDTRSTNGKR
KTCIGSCSWMAPEIIASAKGSSYDSRADVWALGITAIELADGKAPFADMHPTRAMFQILR
NPPPTLYRQSNWSQNFNDFILECLEKNHDHRPFLIEVMEHPFFTELPSNDYYLSQELKIL
YKDVETINFPTQNETIIHNGLLKTHDNKIEKLYVEDLAALEKLSDDTILDEVKNRFKNGS
TYSYIGDVLLSLNPNKEFPIYDRKFHNRYLFKSRSDNAPHIFAVADSAYQDMMHHEEQQY
IIFSGESYSGKTANMRLCFEHLIVMGEGNAGIVNRLQNALLAVNALTHAGTPLNNDSTRC
ILQTQMTFGTTGKLSGAIFYVYLLEKTRVSTTDMTQSNFHLFYYFYDAMDAEERLNDFSL
DGGRQYRYLRVPDKFTKSNLHFIRDDPLGNTLKFKDFEQALLALDISQDTLEEIYKILAA
ILLLGEVRFKDSETDRRAALVDPDIVNKIAPLLKIDAKKLSWAFVNYCILVQGDVEKRRM
TTDQARDARDVLAGTLYSRLVDYVVNLINQKLAYNRAIFGDINSIILMDLFGFECFPKNQ
IEQLFVNCINEQMQYHYNQRVFVWEMLEQEEEHLPVTKLNFYDNKIAVDHLMNTPKGLFH
IIDDATRGQYTSDFITDTIGTRKSPYLQRYSATEFSVAHYSGKINYNTRDFIEKNRDFLP
PEMMETMRLSECEIVKTLFTNPLSKSGNLTMAMTEIEARSTSTSRKGAKWANALVNEKIK
NRKMNTLSHGQYSQIHRMRTMSAVFRAASLEILKNLSVISNSGGIQFVRCVRCDLDYREM
NFNEDIVRQQLRAMAILDTARARQKGFSVRIPFQEFLRRYKFLAFDFDENVEMTKDNCRL
LLVRLKMEGWIIGTSKVFLKYYNEEFLARLYETQVKKIIKVQSMMRAFLAKKNIANKFKQ
LNTKQQHVHFSKDLKPEDAVLKIQTAFRGYQMRKKYGPLINQKTGKIDISTAKFIEPFAT
KWRNKSIFQILLQYRSVRHMDLVNFSQQVHIYNQRLMAGLTNTEQCILLEKIDPKEINKE
QLGPIRRAVWKIPFRLDEIPYFDTKFLCDTAQVTNFTTFDEDYEAWDAPLQRRKTVSSHI
NNHLYNIGQRRESIYNDIDEDDGMIVNEPFSRDPTLPIRKIKARNIVYNPSPRQSISSPK
PCEIRPYCISPTPYSQPSVGNLLQKFSADGSEIKPIVFKKRSAPKPPKSNEEKPSWAKKD
PANRPTSPMYRQSKSDTIKEMESFGRKSSDEAETDDSPPFNFQAMLRKTKHNRNSLKRVT
DTKLTLPHDSDYNNNSSEPYVETKPSYSSVVYHSKHDRPKSCNDGNNDNRPTSRKSSLSK
ETLRNKNGTDENDNMDFIQEEIAPGIVIEGYVAEL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g5737.t1 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 1 100 2.8E-19
13 g5737.t1 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 101 304 3.5E-60
11 g5737.t1 Gene3D G3DSA:3.30.70.3240 - 986 1054 7.8E-6
14 g5737.t1 Gene3D G3DSA:1.20.5.190 - 1056 1116 9.8E-8
20 g5737.t1 MobiDBLite mobidb-lite consensus disorder prediction 1357 1379 -
22 g5737.t1 MobiDBLite mobidb-lite consensus disorder prediction 1357 1516 -
24 g5737.t1 MobiDBLite mobidb-lite consensus disorder prediction 1395 1414 -
21 g5737.t1 MobiDBLite mobidb-lite consensus disorder prediction 1446 1470 -
23 g5737.t1 MobiDBLite mobidb-lite consensus disorder prediction 1494 1513 -
4 g5737.t1 PANTHER PTHR46256:SF2 NEITHER INACTIVATION NOR AFTERPOTENTIAL PROTEIN C 1 1512 0.0
5 g5737.t1 PANTHER PTHR46256 AGAP011099-PA 1 1512 0.0
8 g5737.t1 PRINTS PR00193 Myosin heavy chain signature 362 381 2.7E-17
6 g5737.t1 PRINTS PR00193 Myosin heavy chain signature 418 443 2.7E-17
7 g5737.t1 PRINTS PR00193 Myosin heavy chain signature 704 732 2.7E-17
3 g5737.t1 Pfam PF00069 Protein kinase domain 16 283 2.7E-54
1 g5737.t1 Pfam PF00063 Myosin head (motor domain) 334 1040 2.5E-126
2 g5737.t1 Pfam PF00612 IQ calmodulin-binding motif 1098 1116 3.5E-4
15 g5737.t1 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 144 156 -
28 g5737.t1 ProSiteProfiles PS50011 Protein kinase domain profile. 16 283 47.877
25 g5737.t1 ProSiteProfiles PS51456 Myosin motor domain profile. 332 1055 159.759
26 g5737.t1 ProSiteProfiles PS50096 IQ motif profile. 1054 1083 7.144
27 g5737.t1 ProSiteProfiles PS50096 IQ motif profile. 1097 1125 10.017
16 g5737.t1 SMART SM00219 tyrkin_6 16 278 6.6E-13
19 g5737.t1 SMART SM00242 MYSc_2a 326 1053 1.4E-150
17 g5737.t1 SMART SM00015 iq_5 1053 1075 24.0
18 g5737.t1 SMART SM00015 iq_5 1095 1117 0.0022
10 g5737.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 14 308 7.55E-72
9 g5737.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 322 1117 7.97E-172

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5737/g5737.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5737.t1.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004713 protein tyrosine kinase activity MF
GO:0005524 ATP binding MF
GO:0005515 protein binding MF
GO:0016459 myosin complex CC
GO:0004672 protein kinase activity MF
GO:0003774 cytoskeletal motor activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed